Mercurial > repos > fubar > weblogo3
diff rgweblogo/README @ 15:01ec43556e16 draft
use iuc dependendencies
author | fubar |
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date | Mon, 18 Nov 2013 02:19:03 -0500 |
parents | 78fe723fde78 |
children |
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--- a/rgweblogo/README Wed Sep 25 23:31:04 2013 -0400 +++ b/rgweblogo/README Mon Nov 18 02:19:03 2013 -0500 @@ -1,6 +1,7 @@ This is a Galaxy tool wrapper for weblogo3 already available as a web app at the site below but neat as a Galaxy tool +Last updated by Ross to install iuc ghostscript and numpy dependencies. -It generates sequence logos from fasta files such as the alignments generated by clustalw +Weblogo generates sequence logos from fasta files such as the alignments generated by clustalw Note that the image for the help must be in static/images for it to show up on the tool form - it's the same image as goes in test-data @@ -10,6 +11,9 @@ ** Manual Installation** +Don't. + +If you insist, Make sure weblogo3 is installed in your system python and is available on the path for all your nodes Move the test data files to your galaxy root test-data @@ -25,7 +29,7 @@ Source for the weblogo3 python executable is at http://weblogo.berkeley.edu -Written by Ross Lazarus for the Rgenetics project +Galaxy tool wrapper written by Ross Lazarus for the Rgenetics project Copyright Ross Lazarus at gmail com 2011