Mercurial > repos > fubar > weblogo3
comparison rgweblogo/tool_dependencies.xml @ 7:6027af2c1af8 draft
Uploaded
| author | fubar |
|---|---|
| date | Wed, 25 Sep 2013 21:19:44 -0400 |
| parents | c57b6659bedd |
| children | 01ec43556e16 |
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| 6:c57b6659bedd | 7:6027af2c1af8 |
|---|---|
| 8 </package> | 8 </package> |
| 9 <package name="package_weblogo" version="3.3"> | 9 <package name="package_weblogo" version="3.3"> |
| 10 <install version="1.0"> | 10 <install version="1.0"> |
| 11 <actions> | 11 <actions> |
| 12 <!-- populate the environment variables from the dependend repos --> | 12 <!-- populate the environment variables from the dependend repos --> |
| 13 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action> | |
| 14 <action type="shell_command">echo `ls -lt` && echo `pwd`</action> | |
| 15 | |
| 13 <action type="set_environment_for_install"> | 16 <action type="set_environment_for_install"> |
| 14 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 17 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 15 <package name="ghostscript" version="9.07" /> | 18 <package name="ghostscript" version="9.07" /> |
| 16 </repository> | 19 </repository> |
| 17 <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 20 <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 18 <package name="numpy" version="1.7.1" /> | 21 <package name="numpy" version="1.7.1" /> |
| 19 </repository> | 22 </repository> |
| 20 </action> | 23 </action> |
| 21 <!-- install weblogo --> | 24 <!-- install weblogo --> |
| 22 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 25 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 23 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action> | |
| 24 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH && | 26 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH && |
| 25 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> | 27 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> |
| 26 <action type="set_environment"> | 28 <action type="set_environment"> |
| 27 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 29 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 28 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | 30 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |