# HG changeset patch
# User fubar
# Date 1380518032 14400
# Node ID 27194ef332fb578c5752b95e6a624cb0ab8fb446
# Parent  e3fb8f296482f24fab64825df3bce6926d0db18a
Uploaded

diff -r e3fb8f296482 -r 27194ef332fb snpeff33/snpEff.xml
--- a/snpeff33/snpEff.xml	Mon Sep 30 01:06:45 2013 -0400
+++ b/snpeff33/snpEff.xml	Mon Sep 30 01:13:52 2013 -0400
@@ -64,8 +64,8 @@
         <requirement type="package" version="3.3">snpEff</requirement>
     </requirements>
     <command>
-#if str( $intervals ) != 'None':     ### fix this for multiple dataset input
-  ln -s $intervals tempIntervals.bed &&
+#if str( $intervals ) != 'None':    
+  ln -s $intervals tempIntervals.bed &amp;&amp;
 #end if
 SNPEFF_DATA_DIR=`grep '^data_dir' \$JAVA_JAR_PATH/snpEff.config | sed 's/.*data_dir.*[=:]//'`;
 eval "if [ ! -e \$SNPEFF_DATA_DIR/$genomeVersion ] ;