diff test-data/zuber-count_matrix.txt @ 5:a72211e03b38 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/zuber-count_matrix.txt	Mon Jan 19 22:11:00 2015 -0500
@@ -0,0 +1,1106 @@
+ID	Reads_A_T0	Reads_A_T14	Reads_B_T0	Reads_B_T14
+100043305.2	34133	9171	31158	4111
+100043305.4	5589	1	4311	5737
+100043305.5	38651	7722	24711	15331
+2900092E17Rik.377	11759	24	9328	21
+2900092E17Rik.546	3581	30	3211	3
+2900092E17Rik.1051	11498	1907	10809	4116
+2900092E17Rik.1361	5590	1128	5753	1704
+Actl6b.379	8147	3520	8262	3861
+Actl6b.819	7152	5311	7080	2636
+Actl6b.917	3549	3	3326	9
+Actl6b.989	9928	3200	12207	1787
+Actl6b.1221	2449	173	4553	190
+Alkbh2.462	8219	0	8307	3674
+Alkbh2.557	17312	11788	16162	7253
+Alkbh2.590	908	0	3	0
+Alkbh2.640	29881	9982	32507	6981
+Alkbh2.641	30677	31067	21977	5244
+Alkbh3.552	7748	95	10813	628
+Alkbh3.843	7288	47	6161	1141
+Alkbh3.901	11464	10632	13945	986
+Alkbh3.1184	235478	121880	223886	199915
+Aof2.1869	4835	1	6635	18
+Aof2.1956	9168	74	11901	2001
+Aof2.2435	22561	5296	27662	4349
+Aof2.2857	12275	0	13761	0
+Ash1l.1031	40881	12818	35694	11615
+Ash1l.1280	15907	3501	24446	2818
+Ash1l.3810	0	0	570	0
+Ash1l.8132	16135	3240	13553	8157
+Ash1l.9540	19334	4915	19956	482
+Ash2l.586	17315	3908	16296	11351
+Ash2l.805	15308	11745	19785	7504
+Ash2l.948	17154	7175	22222	1182
+Ash2l.1135	10872	23	9514	649
+Ash2l.2130	48820	71306	54356	55586
+Asxl1.2020	8883	85	7366	810
+Asxl1.3548	1499	177	4290	434
+Asxl1.3785	13925	9770	13967	1888
+Asxl1.4792	14695	2973	17368	6663
+Asxl1.5221	207	21	1015	413
+Asxl1.6315	5323	2931	4104	1254
+Asxl2.11	12636	1202	19230	836
+Asxl2.4563	6740	9470	6275	14168
+Asxl2.6593	7040	7865	7327	463
+Asxl2.7130	1005	688	1998	98
+Asxl2.7253	2848	0	4313	1015
+Asxl3.6101	27880	9120	23317	9903
+Asxl3.6824	0	0	0	0
+Asxl3.8947	10505	1283	17111	8040
+Asxl3.10021	11150	77	9094	418
+Asxl3.11070	6878	434	13876	499
+Asxl3.11073	19570	60	23697	1250
+Atm.137	7726	1	7961	0
+Atm.4098	17664	79096	14372	19643
+Atm.4998	5448	0	8348	0
+Atm.5616	26499	17417	25957	5963
+Atm.7782	121694	37584	112860	23911
+Atm.9396	23098	8301	16153	13589
+Atr.1239	7318	0	7499	76
+Atr.3160	4630	0	2454	0
+Atr.4762	7087	502	6196	1408
+Atr.6186	14186	1517	14242	2136
+Atr.7888	2705	715	1274	40
+Atrx.2490	21802	13082	20344	3929
+Atrx.5490	9146	4876	8110	1459
+Atrx.6144	22072	50037	17635	135473
+Atrx.7173	20760	2010	32941	360
+Atrx.7377	4661	7127	5894	858
+Aurkb.520	10448	158	8464	14
+Aurkb.631	12294	13088	16774	9788
+Aurkb.917	9721	85	7381	297
+Aurkb.928	3823	0	3360	70
+Aurkb.1620	2783	0	1689	0
+Aurkb.1803	5485	964	6727	502
+Baz1a.2095	17890	6381	16476	10861
+Baz1a.2451	8018	26337	7113	7350
+Baz1a.4993	4040	2049	5627	4388
+Baz1a.5946	8518	471	7167	756
+Baz1b.801	3377	3	2560	1
+Baz1b.3683	19598	1361	14007	9115
+Baz1b.5646	7619	140	6540	93
+Baz1b.6371	20503	0	14675	4199
+Bmi1.698	13315	927	12090	1400
+Bmi1.895	22321	1589	22783	0
+Bmi1.1440	148	0	1337	0
+Bmi1.1746	57319	7041	58914	6748
+Bmi1.2404	2012	0	5750	0
+Bmi1.2561	7381	4663	6301	1752
+Bop1.778	22193	9880	25011	22498
+Bop1.2228	9126	1164	11243	1759
+Bop1.2403	1267	0	2340	0
+Bptf.1622	19917	1645	16672	1194
+Bptf.3234	29927	1975	29930	1459
+Bptf.7211	9162	196	8435	235
+Bptf.8224	22786	4089	25881	16627
+Braf.3750	251680	111577	252403	96275
+Braf.3826	36692	6171	38833	3552
+Braf.5053	21572	58690	24272	47962
+Brd1.286	2667	1	3889	732
+Brd1.287	47567	32364	42739	11998
+Brd1.2096	15510	483	12893	662
+Brd1.4229	1776	47	2985	0
+Brd2.813	8544	364547	19761	57153
+Brd2.1714	7605	1900	7256	279
+Brd2.3011	1335	40	1645	44
+Brd2.3396	447	431	1478	90
+Brd3.187	20291	0	16080	1
+Brd3.298	45100	2627	41908	2295
+Brd3.411	3322	4993	9122	88
+Brd3.4162	4380	3233	4235	2236
+Brd4.523	59871	250	62100	1030
+Brd4.552	4366	0	4085	0
+Brd4.632	6519	0	8625	0
+Brd4.1448	18590	2201	13467	2049
+Brd4.2097	15250	0	12300	0
+Carm1.892	7893	3	7502	1189
+Carm1.1222	6127	0	5712	860
+Carm1.1454	6356	0	4529	0
+Carm1.1614	2578	0	2116	1032
+Carm1.1717	10432	26	5147	5
+Cbx1.1004	2119	176	2118	68
+Cbx1.1053	55760	32885	49270	78522
+Cbx1.1099	6839	6288	10338	2367
+Cbx1.1103	16450	2350	10274	7958
+Cbx1.1210	4161	1553	6473	768
+Cbx2.2033	3805	6	3394	910
+Cbx2.3537	1236	0	1822	0
+Cbx2.3545	1510	1926	1608	235
+Cbx2.3620	4720	41	4982	1298
+Cbx2.3706	15664	23374	12341	9903
+Cbx3.882	3121	0	3119	0
+Cbx3.1206	13461	1774	17078	1812
+Cbx3.1339	19195	1352	22424	4795
+Cbx3.1719	4977	0	5860	0
+Cbx3.1735	20825	237	16087	3528
+Cbx4.1794	9233	3426	6939	16366
+Cbx4.1844	2832	3464	4193	744
+Cbx4.2573	69888	62259	67617	50333
+Cbx4.4403	3806	0	4281	1847
+Cbx4.5120	11707	4670	9880	5888
+Cbx5.1309	20635	20130	21845	21774
+Cbx5.4366	907	0	563	0
+Cbx5.4409	9565	1475	14591	3062
+Cbx5.4508	26823	20517	26002	16192
+Cbx5.5707	3839	488	2459	831
+Cbx5.8586	2634	924	4578	8
+Cbx6.1535	1684	44	2014	5254
+Cbx6.3332	32724	36460	41754	5931
+Cbx6.3473	1027	199	1093	2766
+Cbx6.3969	25243	20256	20037	7607
+Cbx7.745	41390	8417	44824	10473
+Cbx7.1633	9110	0	7318	594
+Cbx7.1634	8492	1	7765	1175
+Cbx7.1639	3050	380	4027	305
+Cbx7.2006	12881	0	11203	1803
+Cbx7.2504	15650	74	14065	1023
+Cbx8.136	14429	562	10096	1833
+Cbx8.1120	23518	5129	18818	4414
+Cbx8.1342	91120	117507	88227	77242
+Chaf1a.166	7650	0	8656	0
+Chaf1a.1039	1166	0	1879	0
+Chaf1a.2122	36245	25317	42693	4155
+Chaf1b.367	1271	0	3122	0
+Chaf1b.566	5644	2726	6501	805
+Chaf1b.692	8344	4791	14305	0
+Chaf1b.901	11840	1680	10452	2885
+Chaf1b.1223	3527	0	4039	327
+Chd1.746	42149	4740	47141	5029
+Chd1.1103	9539	301	10681	317
+Chd1.2443	9033	998	8891	1151
+Chd1.2959	17519	3663	17844	3550
+Chd1.4558	16095	18060	18409	694
+Chd1l.2305	13833	2232	9271	1687
+Chd1l.2598	2003	4	3653	467
+Chd1l.2804	8186	1848	9889	4110
+Chd2.926	12754	2298	14491	1390
+Chd2.3700	18791	8160	17139	6180
+Chd2.3984	39660	3183	28160	5299
+Chd2.8087	21625	5699	19522	2258
+Chd2.8913	44266	4697	48691	2032
+Chd3.482	5654	84	2967	437
+Chd3.3249	18194	209	16629	2181
+Chd3.4011	12016	5122	15608	2384
+Chd3.6496	8188	250	11414	658
+Chd3.7148	6057	11694	5216	14343
+Chd3.7149	18779	2183	20787	4073
+Chd4.2060	3613	0	9449	3
+Chd4.3326	0	0	0	0
+Chd4.3423	18147	329	24617	1474
+Chd4.3772	18305	1967	17413	13691
+Chd5.2301	20061	34429	23079	1480
+Chd5.2900	8518	12121	8113	23821
+Chd5.5471	16812	135	14891	832
+Chd5.6392	27664	42408	24064	32029
+Chd6.311	5183	30	4482	283
+Chd6.4698	11850	691	9494	952
+Chd6.4988	9782	9443	8227	3677
+Chd6.9610	4646	4252	7143	2341
+Chd7.1269	5308	36016	5596	15544
+Chd7.1502	17568	19902	24339	10329
+Chd7.5857	24131	42321	23035	13811
+Chd7.6498	2585	2388	3680	681
+Chd7.7229	4726	3715	3325	5096
+Chd8.434	10501	5059	13580	0
+Chd8.3265	14017	45094	15274	35713
+Chd8.4169	46755	130786	47380	90425
+Chd8.5352	15081	0	10249	963
+Chd8.6946	24933	3532	29506	678
+Chd9.1402	8846	10701	5390	15209
+Chd9.3919	30650	5485	31316	8951
+Chd9.9352	4541	7	4353	547
+Chd9.10928	11786	846	6533	3211
+Clock.693	30386	192421	30632	61226
+Clock.1387	3512	16	6185	1879
+Clock.4461	8821	15720	13658	32530
+Clock.4611	7531	1868	7634	960
+Clock.5863	8924	0	6154	0
+Crebbp.704	6954	132149	5748	28129
+Crebbp.2064	15054	21613	9232	8683
+Crebbp.2118	16858	416	14067	1155
+Crebbp.3582	10871	49874	11472	31243
+Crebbp.4463	10735	244297	8756	87465
+Ctsl.940	64046	40415	67042	33661
+Ctsl.1445	4304	11403	6955	921
+Ctsl.1941	14957	114	9881	1230
+Ctsl.1942	3801	651	5404	119
+Ctsl.1947	83104	55376	79952	45160
+Cxxc1.68	22254	7624	21861	13433
+Cxxc1.359	16364	0	14694	712
+Cxxc1.1889	13048	105	15103	1803
+Cxxc1.2034	10733	2431	11257	5220
+Cxxc1.2133	24632	4890	18850	3756
+Dmap1.439	22069	17051	18179	11546
+Dmap1.518	270	6	835	0
+Dmap1.1354	27540	2702	27126	5348
+Dmap1.1355	38236	3410	25053	19190
+Dmap1.1487	16458	35264	12204	7974
+Dnmt1.437	2774	1	4466	1933
+Dnmt1.828	37302	0	37771	2350
+Dnmt1.1137	1982	0	900	0
+Dnmt1.4462	19205	1622	19314	2525
+Dnmt1.4848	11770	53612	13284	12279
+Dnmt3a.16	28736	52935	39231	63096
+Dnmt3a.1669	7497	2055	9359	279
+Dnmt3a.2338	26093	14264	21886	8356
+Dnmt3a.4173	90754	147980	91811	371738
+Dnmt3b.275	2759	0	4350	967
+Dnmt3b.579	23800	2457	15840	4413
+Dnmt3b.958	18118	1831	14535	41
+Dnmt3b.2218	4817	0	5321	0
+Dnmt3l.306	1360	0	7206	133
+Dnmt3l.760	107789	89964	109791	48867
+Dnmt3l.1049	12911	3759	16355	4238
+Dnmt3l.1333	10696	5884	9512	8646
+Dnmt3l.1350	11998	13780	13122	7740
+Dot1l.602	15468	1611	18782	28
+Dot1l.941	308	0	1	0
+Dot1l.3626	1819	0	2461	0
+Dub2a.769	20173	45614	27227	22193
+Dub2a.1334	3322	913	3054	1061
+Dub2a.1391	7400	0	6144	0
+Dub2a.1397	1989	1475	2177	2420
+Dub2a.1444	6000	772	9736	1277
+Dub2a.1445	17909	5522	13925	4446
+Edf1.486	21827	12951	27904	16057
+Edf1.628	14218	14904	9199	1968
+Edf1.631	17016	5000	14264	1849
+Edf1.652	14581	2743	14121	1112
+Eed.710	5375	0	4431	0
+Eed.949	19036	15171	17602	11188
+Eed.1083	40824	1687	39480	698
+Eed.1397	27933	4138	25394	8774
+Eed.1820	36795	99609	29844	5995
+EG330129.869	2661	61	1902	619
+EG330129.2118	14758	1039	18080	5314
+EG330129.2262	15426	19116	20410	28859
+EG330129.2329	19693	6224	15507	1799
+EG546387.1344	61423	132971	65502	105110
+EG546387.2159	18532	5441	17522	6441
+EG546387.2272	5181	2230	3858	1293
+Ehmt1.66	23038	3862	34576	8831
+Ehmt1.386	78913	8990	88361	18872
+Ehmt1.859	3728	0	2265	0
+Ehmt1.920	12674	47588	15786	8109
+Ehmt1.3003	17009	4	13764	0
+Ehmt2.724	28567	15002	19363	7218
+Ehmt2.1880	16161	724	10956	2142
+Ehmt2.2014	9586	2303	10876	5893
+Ehmt2.3146	20606	4947	20381	4673
+Ehmt2.3202	12157	924	12076	0
+Elp3.117	13584	1649	11794	7368
+Elp3.215	14727	1372	14790	23
+Elp3.219	17103	125	19102	1933
+Elp3.592	7651	1	13554	437
+Ep300.754	49982	34746	48931	26824
+Ep300.3850	4229	0	4817	0
+Ep300.5490	19810	2485	18297	1698
+Ep300.7826	25198	3046	25177	307
+Ep300.8647	34570	13119	36600	5763
+Evi1.649	23821	1022	23583	938
+Evi1.652	4938	1433	6371	7108
+Evi1.1371	6351	4198	5211	3390
+Evi1.1978	0	0	0	0
+Evi1.2720	8079	4150	7301	4240
+Ezh1.68	23617	6527	29619	30045
+Ezh1.73	2152	1	2857	3113
+Ezh1.4104	5575	74	3572	1105
+Ezh1.4105	10809	0	9427	3236
+Ezh2.556	5195	3183	2808	898
+Ezh2.1370	13095	1	16542	4081
+Ezh2.1678	39634	33392	36467	37036
+Ezh2.2124	24614	13542	24923	1861
+Ezh2.2253	23466	844	25517	49
+Fbxl10.356	9135	6792	12154	10033
+Fbxl10.443	1186	0	1217	0
+Fbxl10.3131	12157	3918	15296	5301
+Fbxl10.3145	28882	145367	25071	266575
+Fbxl11.663	4479	254	4500	248
+Fbxl11.1840	2254	1230	892	701
+Fbxl11.7144	14494	9088	14709	3408
+Fbxl11.7145	10143	70	8133	314
+Fbxl19.1945	4994	4	6347	0
+Fbxl19.2841	4416	0	3763	0
+Fbxl19.3203	17900	0	21153	395
+Fkbp1a.646	7663	6	6272	169
+Fkbp1a.827	3731	66420	5825	4725
+Fkbp1a.851	2142	4	1255	0
+Fkbp1a.854	17779	5211	17456	2979
+Fkbp2.195	12182	84	7562	997
+Fkbp2.213	1713	0	1042	0
+Fkbp2.532	190	0	104	0
+Fkbp2.581	29896	2210	38434	3532
+Fkbp5.595	6187	1738	9425	3732
+Fkbp5.628	2539	448	2028	4
+Fkbp5.1219	2462	0	1697	3
+Fkbp5.2613	0	0	0	0
+Fkbp5.2813	27937	0	19923	52176
+Fkbp5.3272	7148	720	11556	616
+Gtf3c4.2358	14364	7409	14531	1446
+Gtf3c4.2444	5365	106	8597	3468
+Gtf3c4.2605	13187	44260	17871	32768
+Gtf3c4.3160	12285	1919	9387	2634
+Gtf3c4.3163	23210	21932	22233	10393
+H2afz.508	7648	1460	7024	236
+H2afz.692	13424	1472	13562	1762
+H2afz.823	8678	0	5225	0
+H2afz.909	27579	108855	26279	31357
+H2afz.937	6529	1591	6908	1939
+Hat1.290	40899	11691	48020	9574
+Hat1.638	278838	398517	279877	354180
+Hat1.866	13651	10058	10447	5453
+Hat1.1528	5921	3024	8953	2868
+Hcfc1.812	28786	4502	27161	4598
+Hcfc1.4648	8357	0	9882	1262
+Hcfc1.7430	4307	160	3200	35
+Hcfc1.7506	43003	8634	44678	2972
+Hcfc1.8014	8845	33	9753	0
+Hdac1.245	4808	1777	5428	576
+Hdac1.1053	15708	11064	13398	2392
+Hdac1.1065	6119	41	4640	0
+Hdac1.1830	10309	3420	7166	15784
+Hdac10.1645	0	0	0	0
+Hdac10.2041	9421	30	13575	906
+Hdac10.2307	11332	4605	15942	1310
+Hdac11.2025	5748	390	4388	1
+Hdac11.2058	21979	11670	33308	23388
+Hdac11.2182	2741	0	1897	0
+Hdac11.2460	3150	226	3435	986
+Hdac11.2461	5426	792	5499	365
+Hdac2.439	29909	2942	35230	5020
+Hdac2.440	1162	0	1339	0
+Hdac2.1184	19432	33612	18548	32335
+Hdac2.1611	39116	35275	44610	9355
+Hdac2.1919	58543	16034	62733	11276
+Hdac3.161	5438	284	5431	16
+Hdac3.854	11512	3613	11530	925
+Hdac3.987	15606	236696	17908	57900
+Hdac3.1037	4439	1723	4619	0
+Hdac3.1491	7985	0	6286	986
+Hdac4.331	16436	6934	19062	1466
+Hdac4.431	6765	158440	9201	22187
+Hdac4.1903	1357	657	1195	991
+Hdac4.3273	14916	944	19717	2146
+Hdac5.1115	2098	613	2229	0
+Hdac5.1936	18798	7849	29847	6138
+Hdac5.2060	2568	3	1204	121
+Hdac5.2412	13712	1	11404	3505
+Hdac5.2886	8136	196	8759	209
+Hdac6.530	0	0	0	0
+Hdac6.2249	1808	1429	2043	0
+Hdac6.3838	6542	2441	9262	5129
+Hdac6.4026	21285	12348	26787	20564
+Hdac7.560	6870	687	6840	0
+Hdac7.836	8926	5421	7502	10495
+Hdac7.1293	34937	9117	34192	6997
+Hdac7.2255	20876	6721	30076	1172
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