comparison tool_dependencies.xml @ 3:4cf80e2e07bf draft

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3:4cf80e2e07bf

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.1.2">
        <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="shrnaseq_r" version="0.1">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                    <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="R" version="3.1.2" />
                    </repository>
                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz?raw=true</package>
                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.22.4.tar.gz?raw=true</package>
                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.8.5.tar.gz?raw=true</package>
                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz?raw=true</package>
                </action>
                <action type="chmod">
                    <file mode="755">$REPOSITORY_INSTALL_DIR/hairpinTool.R</file>            
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="HAIRPINTOOL_R_SOURCE">$REPOSITORY_INSTALL_DIR/hairpinTool.R</environment_variable>
                </action>
            </actions>
        </install>
    </package>
    <readme>
    </readme>
</tool_dependency>