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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.2">
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4 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="shrnaseq_r" version="0.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="setup_r_environment">
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10 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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11 <package name="R" version="3.1.2" />
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12 </repository>
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13 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz?raw=true</package>
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14 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.22.4.tar.gz?raw=true</package>
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15 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.8.5.tar.gz?raw=true</package>
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16 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz?raw=true</package>
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17 </action>
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18 <action type="chmod">
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19 <file mode="755">$REPOSITORY_INSTALL_DIR/hairpinTool.R</file>
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20 </action>
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21 <action type="set_environment">
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22 <environment_variable action="set_to" name="HAIRPINTOOL_R_SOURCE">$REPOSITORY_INSTALL_DIR/hairpinTool.R</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 </package>
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27 <readme>
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28 </readme>
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29 </tool_dependency>
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