Mercurial > repos > fubar > rnastar_2_3_0e

view rgrnastar/prepStar.sh @ 0:52c43185e3f3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
initial commit
author fubar
date Fri, 09 Aug 2013 04:13:53 -0400
parents
children
line wrap: on
line source

# automate their generation f
# from existing fasta genomes
INDEXROOT=/data/ucsc
# fix that
for genome in hg19 hg18 mm9 mm10 rn4 rn5
do
  TARGET=${INDEXROOT}/${genome}/rnastar
  mkdir -p $TARGET
  cd $TARGET
  STAR --runMode genomeGenerate --genomeDir $TARGET --genomeFastaFiles ${TARGET}/$genome.fa --runThreadN 4
done