Mercurial > repos > fubar > rgrnastar_203e

changeset 19:ca0e1cfec8c7 draft

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Uploaded
author fubar
date Tue, 04 Mar 2014 18:56:22 -0500
parents 520031fefcdd
children 1a6e7d108f8b
files rg_rnaStar.xml tool_dependencies.xml
diffstat 2 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/rg_rnaStar.xml	Tue Mar 04 18:53:37 2014 -0500
+++ b/rg_rnaStar.xml	Tue Mar 04 18:56:22 2014 -0500
@@ -1,9 +1,9 @@
 <tool id="rna_star" name="RNA-STAR" version="0.23">
     <description>Gapped-read mapper for RNA-seq data</description>
     <requirements>
-        <requirement type="package" version="2.3.0e">package_rnastar</requirement>
-        <requirement type="package" version="0.1.19">package_samtools</requirement>
-        <requirement type="package" version="2.3.0e">star_230e</requirement>
+        <requirement type="package" version="2.3.0e">rnastar</requirement>
+        <requirement type="package" version="0.1.19">samtools</requirement>
+        <requirement type="package" version="2.3.0e">star</requirement>
     </requirements>
     <command>
     ##
--- a/tool_dependencies.xml	Tue Mar 04 18:53:37 2014 -0500
+++ b/tool_dependencies.xml	Tue Mar 04 18:56:22 2014 -0500
@@ -1,12 +1,12 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="package_rnastar" version="2.3.0e">
+    <package name="rnastar" version="2.3.0e">
         <repository changeset_revision="6dcdb10d0d8b" name="package_rnastar_230e" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
-    <package name="package_samtools" version="0.1.19">
+    <package name="samtools" version="0.1.19">
         <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
-    <package name="star_230e" version="2.3.0e">
+    <package name="star" version="2.3.0e">
         <readme>
 Installs the STAR wrapper and dependency packages samtools and star - see https://code.google.com/p/rna-star/
 STAR is a very fast mapper for rna-seq giving junctions if the indexes are constructed with a junction library