# HG changeset patch # User fubar # Date 1394064411 18000 # Node ID a711b92d85c1c836fe017650e7890bed9c90946b # Parent 64d3abfb85355888746faa624343c31af9d95c2b Uploaded diff -r 64d3abfb8535 -r a711b92d85c1 rg_rnaStar.xml --- a/rg_rnaStar.xml Wed Mar 05 18:56:30 2014 -0500 +++ b/rg_rnaStar.xml Wed Mar 05 19:06:51 2014 -0500 @@ -3,7 +3,6 @@ <requirements> <requirement type="package" version="2.3.1z">rnastar</requirement> <requirement type="package" version="0.1.19">samtools</requirement> - <requirement type="package" version="2.3.1z">starwrapper</requirement> </requirements> <command> ## diff -r 64d3abfb8535 -r a711b92d85c1 tool_dependencies.xml --- a/tool_dependencies.xml Wed Mar 05 18:56:30 2014 -0500 +++ b/tool_dependencies.xml Wed Mar 05 19:06:51 2014 -0500 @@ -6,10 +6,10 @@ <package name="samtools" version="0.1.19"> <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> - <package name="starwrapper" version="2.3.1z"> - <readme> + + <readme> Installs the STAR wrapper and dependency packages samtools and star - see https://code.google.com/p/rna-star/ STAR is a very fast mapper for rna-seq giving junctions if the indexes are constructed with a junction library - </readme> - </package> + </readme> + </tool_dependency>