Mercurial > repos > fubar > rgrnastar_203e

diff rgrnastar/rg_rnaStar.xml @ 13:9f65a7b3abeb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Tue, 20 Aug 2013 22:39:23 -0400
parents f81bf1f1d924
children 1e40b977aa58
line wrap: on
line diff
--- a/rgrnastar/rg_rnaStar.xml	Mon Aug 12 19:56:13 2013 -0400
+++ b/rgrnastar/rg_rnaStar.xml	Tue Aug 20 22:39:23 2013 -0400
@@ -116,7 +116,8 @@
     </inputs>
 
     <outputs>
-       <data format="txt" name="output_log" label="${on_string}_${jobName}_starchimjunc.bed" from_work_dir="Chimeric.out.junction">
+       <data format="txt" name="output_log" label="${on_string}_{jobName}.log" from_work_dir="Log.final.out"/>
+       <data format="interval" name="chimeric_junctions" label="${on_string}_{jobName}_starchimjunc.bed" from_work_dir="Chimeric.out.junction">
           <filter>(params['settingsType'] == 'full' and params['chim_segment_min'] > 0)</filter>
           <actions>
              <conditional name="refGenomeSource.genomeSource">