Mercurial > repos > fubar > rgrnastar_203e

diff tool_dependencies.xml @ 15:9d72d0221c7f draft

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Changed over to a separate STAR package dependency
author fubar
date Tue, 04 Mar 2014 18:40:08 -0500
parents
children bab81f19eeea
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Mar 04 18:40:08 2014 -0500
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="rnastar" version="2.3.0e">
+        <repository changeset_revision="6dcdb10d0d8b" name="package_rnastar_230e" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="samtools" version="0.1.19">
+        <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="star_230e" version="2.3.0e">
+        <readme>
+Installs the STAR wrapper and dependency packages samtools and star - see https://code.google.com/p/rna-star/
+STAR is a very fast mapper for rna-seq giving junctions if the indexes are constructed with a junction library
+        </readme>
+    </package>
+</tool_dependency>