Mercurial > repos > fubar > rgrnastar_203e
diff rgrnastar/rg_rnaStar.xml @ 14:1e40b977aa58 draft
Uploaded
| author | fubar |
|---|---|
| date | Sat, 31 Aug 2013 03:06:03 -0400 |
| parents | 9f65a7b3abeb |
| children |
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--- a/rgrnastar/rg_rnaStar.xml Tue Aug 20 22:39:23 2013 -0400 +++ b/rgrnastar/rg_rnaStar.xml Sat Aug 31 03:06:03 2013 -0400 @@ -1,4 +1,4 @@ -<tool id="rna_star" name="RNA-STAR" version="0.22"> +<tool id="rna_star" name="RNA-STAR" version="0.23"> <description>Gapped-read mapper for RNA-seq data</description> <requirements> <requirement type="package" version="2.3.0e">rnastar</requirement> @@ -116,8 +116,8 @@ </inputs> <outputs> - <data format="txt" name="output_log" label="${on_string}_{jobName}.log" from_work_dir="Log.final.out"/> - <data format="interval" name="chimeric_junctions" label="${on_string}_{jobName}_starchimjunc.bed" from_work_dir="Chimeric.out.junction"> + <data format="txt" name="output_log" label="${on_string}_${jobName}.log" from_work_dir="Log.final.out"/> + <data format="interval" name="chimeric_junctions" label="${on_string}_${jobName}_starchimjunc.bed" from_work_dir="Chimeric.out.junction"> <filter>(params['settingsType'] == 'full' and params['chim_segment_min'] > 0)</filter> <actions> <conditional name="refGenomeSource.genomeSource">