# HG changeset patch
# User fubar
# Date 1422357376 18000
# Node ID a061150f1d940e3a07108efb3b9749d9ce30a7e0
# Parent  445cb45d1bc09b93a2c065e9a10c04fea600d599
Uploaded

diff -r 445cb45d1bc0 -r a061150f1d94 rg_nri.xml
--- a/rg_nri.xml	Thu Jan 08 01:05:20 2015 -0500
+++ b/rg_nri.xml	Tue Jan 27 06:16:16 2015 -0500
@@ -1,7 +1,7 @@
-<tool id="rg_nri" name="NRI" version="0.03">
+<tool id="rg_nri" name="NRI" version="0.04">
   <description>and other model improvement measures</description>
   <requirements>
-      <requirement type="package" version="3.1.1">R_3_1_1</requirement>
+      <requirement type="package" version="3.1.2">R</requirement>
       <requirement type="package" version="1.3.18">graphicsmagick</requirement>
       <requirement type="package" version="9.10">ghostscript</requirement>
       <requirement type="package" version="2.14">glmnet_lars_2_14</requirement>
diff -r 445cb45d1bc0 -r a061150f1d94 rglasso_cox.xml
--- a/rglasso_cox.xml	Thu Jan 08 01:05:20 2015 -0500
+++ b/rglasso_cox.xml	Tue Jan 27 06:16:16 2015 -0500
@@ -1,7 +1,7 @@
-<tool id="rglasso_cox" name="Lasso" version="0.03">
+<tool id="rglasso_cox" name="Lasso" version="0.04">
   <description>and cox regression using elastic net</description>
   <requirements>
-      <requirement type="package" version="3.1.1">R_3_1_1</requirement>
+      <requirement type="package" version="3.1.2">R</requirement>
       <requirement type="package" version="1.3.18">graphicsmagick</requirement>
       <requirement type="package" version="9.10">ghostscript</requirement>
       <requirement type="package" version="2.14">glmnet_lars_2_14</requirement>
diff -r 445cb45d1bc0 -r a061150f1d94 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jan 08 01:05:20 2015 -0500
+++ b/tool_dependencies.xml	Tue Jan 27 06:16:16 2015 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R_3_1_1" version="3.1.1">
-        <repository changeset_revision="63cdb9b2234c" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="R" version="3.1.2">
+        <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="graphicsmagick" version="1.3.18">
         <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -13,8 +13,8 @@
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="63cdb9b2234c" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="R_3_1_1" version="3.1.1" />
+                    <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.1.2" />
                     </repository>
                     <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/RColorBrewer_1.1-2.tar.gz?raw=true</package>
                     <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/MASS_7.3-35.tar.gz?raw=true</package>
@@ -79,6 +79,8 @@
         </install>
         <readme>
         Yee-Haw! Lasso for Galaxy!
+        Uses glmnet from the R CRAN.
+        See http://web.stanford.edu/~hastie/glmnet/glmnet_alpha.html
         </readme>
     </package>
 </tool_dependency>