Mercurial > repos > fubar > rglasso_1_9_8

comparison test-data/coxlassotest.html @ 15:1948c6a82a9b draft

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author iuc
date Wed, 18 Feb 2015 11:37:11 -0500
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14:a061150f1d94 15:1948c6a82a9b
6 <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> 6 <link rel="stylesheet" href="/static/style/base.css" type="text/css" />
7 </head> 7 </head>
8 <body> 8 <body>
9 <div class="toolFormBody"> 9 <div class="toolFormBody">
10 10
11 <div class="infomessage">Galaxy Tool "rglasso" run at 28/12/2014 13:07:57</div><br/> 11 <div class="infomessage">Galaxy Tool "rglasso" run at 18/02/2015 22:06:08</div><br/>
12 <div class="toolFormTitle">cox images and outputs</div> 12 <div class="toolFormTitle">cox images and outputs</div>
13 (Click on a thumbnail image to download the corresponding original PDF image)<br/> 13 (Click on a thumbnail image to download the corresponding original PDF image)<br/>
14 <div><table class="simple" cellpadding="2" cellspacing="2"> 14 <div><table class="simple" cellpadding="2" cellspacing="2">
15 <tr> 15 <tr>
16 <td><a href="cox_Coxglmnettest_glmnet_cvdeviance.pdf"><img src="cox_Coxglmnettest_glmnet_cvdeviance.png" title="Click to download a PDF of cox_Coxglmnettest_glmnet_cvdeviance.pdf" hspace="5" width="400" 16 <td><a href="cox_Coxglmnettest_glmnet_cvdeviance.pdf"><img src="cox_Coxglmnettest_glmnet_cvdeviance.png" title="Click to download a PDF of cox_Coxglmnettest_glmnet_cvdeviance.pdf" hspace="5" width="400"
32 32
33 hits_lambda_1se hits_lambda_min 33 hits_lambda_1se hits_lambda_min
34 34
35 rhubarb 10 10 35 rhubarb 10 10
36 36
37 vegemite 3 10 37 vegemite 6 6
38
39 apple 0 1
40 38
41 [1] @@@ Results preview: 39 [1] @@@ Results preview:
42 40
43 regulator partial_likelihood forced_in glmnet_model best_lambda lambdaChoice alpha 41 regulator partial_likelihood forced_in glmnet_model best_lambda lambdaChoice alpha
44 42
102 100
103 [1] @@@ Cox model will predict yvar= status using cols= rhubarb,vegemite,apple n preds= 3 forced in= rhubarb 101 [1] @@@ Cox model will predict yvar= status using cols= rhubarb,vegemite,apple n preds= 3 forced in= rhubarb
104 102
105 [1] @@@ SessionInfo for this R session: 103 [1] @@@ SessionInfo for this R session:
106 104
107 R version 3.0.2 (2013-09-25) 105 R version 3.1.0 (2014-04-10)
108 106
109 Platform: x86_64-pc-linux-gnu (64-bit) 107 Platform: x86_64-unknown-linux-gnu (64-bit)
110 108
111 locale: 109 locale:
112 110
113 [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8 LC_PAPER=en_AU.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C 111 [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8 LC_PAPER=en_AU.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
114 112
116 114
117 [1] splines methods stats graphics grDevices utils datasets base 115 [1] splines methods stats graphics grDevices utils datasets base
118 116
119 other attached packages: 117 other attached packages:
120 118
121 [1] pec_2.4.4 survival_2.37-7 lars_1.2 glmnet_1.9-8 Matrix_1.1-4 119 [1] pec_2.4.4 survival_2.37-7 lars_1.2 glmnet_1.9-8 Matrix_1.1-5
122 120
123 loaded via a namespace (and not attached): 121 loaded via a namespace (and not attached):
124 122
125 [1] codetools_0.2-9 foreach_1.4.2 grid_3.0.2 iterators_1.0.7 lattice_0.20-29 lava_1.3 prodlim_1.5.1 123 [1] codetools_0.2-10 foreach_1.4.2 grid_3.1.0 iterators_1.0.7 lattice_0.20-29 lava_1.3 prodlim_1.5.1
126 124
127 Warning messages: 125 Warning messages:
128 126
129 1: In if (is.na(predict_at)) { ... : 127 1: In if (is.na(predict_at)) { ... :
130 128
155 153
156 <div class="toolFormTitle">All output files available for downloading</div> 154 <div class="toolFormTitle">All output files available for downloading</div>
157 155
158 <div><table class="colored" cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr> 156 <div><table class="colored" cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr>
159 157
160 <tr><td><a href="cox_Coxglmnettest_glmnet_cvdeviance.pdf">cox_Coxglmnettest_glmnet_cvdeviance.pdf</a></td><td>6.3 KB</td></tr> 158 <tr><td><a href="cox_Coxglmnettest_glmnet_cvdeviance.pdf">cox_Coxglmnettest_glmnet_cvdeviance.pdf</a></td><td>6.4 KB</td></tr>
161 <tr class="odd_row"><td><a href="cox_Coxglmnettest_glmnetdev.pdf">cox_Coxglmnettest_glmnetdev.pdf</a></td><td>5.3 KB</td></tr> 159 <tr class="odd_row"><td><a href="cox_Coxglmnettest_glmnetdev.pdf">cox_Coxglmnettest_glmnetdev.pdf</a></td><td>5.3 KB</td></tr>
162 <tr><td><a href="cox_cross_validation_model_counts.xls">cox_cross_validation_model_counts.xls</a></td><td>47 B</td></tr> 160 <tr><td><a href="cox_cross_validation_model_counts.xls">cox_cross_validation_model_counts.xls</a></td><td>42 B</td></tr>
163 <tr class="odd_row"><td><a href="cox_rglasso.log">cox_rglasso.log</a></td><td>563 B</td></tr> 161 <tr class="odd_row"><td><a href="cox_rglasso.log">cox_rglasso.log</a></td><td>522 B</td></tr>
164 <tr><td><a href="rglasso.Rscript">rglasso.Rscript</a></td><td>21.5 KB</td></tr> 162 <tr><td><a href="rglasso.Rscript">rglasso.Rscript</a></td><td>21.5 KB</td></tr>
165 <tr class="odd_row"><td><a href="rglasso_error.log">rglasso_error.log</a></td><td>803 B</td></tr> 163 <tr class="odd_row"><td><a href="rglasso_error.log">rglasso_error.log</a></td><td>803 B</td></tr>
166 <tr><td><a href="rglasso_runner.log">rglasso_runner.log</a></td><td>1.7 KB</td></tr> 164 <tr><td><a href="rglasso_runner.log">rglasso_runner.log</a></td><td>1.7 KB</td></tr>
167 </table></div><br/> 165 </table></div><br/>
168 </div></body></html> 166 </div></body></html>