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[1] "All partial likelihood coefficients from Cox model at minimum lambda of 0.00138091491730048:"

3 x 1 sparse Matrix of class "dgCMatrix"

                    1

rhubarb  1.124517e-03

vegemite 1.444990e-01

apple    3.344565e-06

Loading required package: Matrix

Loading required package: methods

Loaded glmnet 1.9-8

Loaded lars 1.2

Warning messages:

1: In if (class(larsres) == "try-error") { :

  the condition has length > 1 and only the first element will be used

2: In plot.window(...) : "label" is not a graphical parameter

3: In plot.xy(xy, type, ...) : "label" is not a graphical parameter

4: In axis(side = side, at = at, labels = labels, ...) :

  "label" is not a graphical parameter

5: In axis(side = side, at = at, labels = labels, ...) :

  "label" is not a graphical parameter

6: In box(...) : "label" is not a graphical parameter

7: In title(...) : "label" is not a graphical parameter

## Toolfactory generated command line = Rscript - None None

[1] Cox model: Got yvar= time,status cols 1 n preds= 3 forced in= 3

[2] Cox model: Got yvar= time,status cols 2 n preds= 3 forced in= 3

[1] Results preview:

         regulator partial_likelihood forced_in glmnet_model best_lambda

rhubarb    rhubarb        0.001180324      TRUE          cox  0.01508333

vegemite  vegemite        0.093827440     FALSE          cox  0.01508333

[1] SessionInfo for this R session:

R version 3.1.0 (2014-04-10)

Platform: x86_64-unknown-linux-gnu (64-bit)

locale:

 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C               LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    

 [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8    LC_PAPER=en_AU.UTF-8       LC_NAME=C                 

 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:

[1] methods   stats     graphics  grDevices utils     datasets  base     

other attached packages:

[1] lars_1.2     glmnet_1.9-8 Matrix_1.1-4

loaded via a namespace (and not attached):

[1] grid_3.1.0      lattice_0.20-29