(Click on a thumbnail image to download the corresponding original PDF image)

[1] @@@ Cox model will be predicted at times = 3.724234,1325.40516225,2373.090418,3650.1730825,4989.405682

[1] Times each predictor was selected in CV models (excluding zero count predictors)

         hits_lambda_1se hits_lambda_min

rhubarb               10              10

vegemite               6               6

[1] @@@ Results preview:

        regulator partial_likelihood forced_in glmnet_model best_lambda lambdaChoice alpha

rhubarb   rhubarb          0.0012215      TRUE          cox     0.04197   lambda.1se  0.95

Loading required package: Matrix

Loading required package: methods

Loaded glmnet 1.9-8

Loaded lars 1.2

Loading required package: splines

Warning messages:

1: In if (is.na(predict_at)) { :

  the condition has length > 1 and only the first element will be used

2: In if (class(p) == "try-error") { :

  the condition has length > 1 and only the first element will be used

3: In plot.window(...) : "label" is not a graphical parameter

4: In plot.xy(xy, type, ...) : "label" is not a graphical parameter

5: In axis(side = side, at = at, labels = labels, ...) :

  "label" is not a graphical parameter

6: In axis(side = side, at = at, labels = labels, ...) :

  "label" is not a graphical parameter

7: In box(...) : "label" is not a graphical parameter

8: In title(...) : "label" is not a graphical parameter

## Toolfactory running rglasso as Rscript script

[1] @@@ Using alpha = 0.95 for all models

[1] @@@@ Input has 500 samples and 3 predictors

[1] @@@ Cox model will predict yvar= status using cols= rhubarb,vegemite,apple n preds= 3 forced in= rhubarb

[1] @@@ SessionInfo for this R session:

R version 3.1.0 (2014-04-10)

Platform: x86_64-unknown-linux-gnu (64-bit)

locale:

 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C               LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8     LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8    LC_PAPER=en_AU.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:

[1] splines   methods   stats     graphics  grDevices utils     datasets  base     

other attached packages:

[1] pec_2.4.4       survival_2.37-7 lars_1.2        glmnet_1.9-8    Matrix_1.1-5   

loaded via a namespace (and not attached):

[1] codetools_0.2-10 foreach_1.4.2    grid_3.1.0       iterators_1.0.7  lattice_0.20-29  lava_1.3         prodlim_1.5.1   

Warning messages:

1: In if (is.na(predict_at)) { ... :

  the condition has length > 1 and only the first element will be used

2: In if (class(p) == "try-error") { ... :

  the condition has length > 1 and only the first element will be used

3: In plot.window(...) : "label" is not a graphical parameter

4: In plot.xy(xy, type, ...) : "label" is not a graphical parameter

5: In axis(side = side, at = at, labels = labels, ...) :

  "label" is not a graphical parameter

6: In axis(side = side, at = at, labels = labels, ...) :

  "label" is not a graphical parameter

7: In box(...) : "label" is not a graphical parameter

8: In title(...) : "label" is not a graphical parameter