view tool_dependencies.xml @ 8:e77b420473fa draft

Fixes to paths in git for deps

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−<?xml version="1.0"?>
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−<tool_dependency>
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−    <package name="R_3_2_2" version="3.2.2">
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−        <repository changeset_revision="883acf7a3ddb" name="package_r_3_2_2" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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−    </package>
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−    <package name="graphicsmagick" version="1.3.18">
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−        <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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−    </package>
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−    <package name="ghostscript" version="9.10">
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−        <repository changeset_revision="9345d2740f0c" name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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−    </package>
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−    <package name="glmnet_lars_3_2" version="3.2">
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−        <install version="1.0">
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−            <actions>
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−                <action type="setup_r_environment">
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−                    <repository changeset_revision="883acf7a3ddb" name="package_r_3_2_2" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
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−                        <package name="R_3_2_2" version="3.2.2" />
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−                    </repository>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/foreach_1.4.3.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/RColorBrewer_1.1-2.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/Rcpp_0.12.1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/RcppEigen_0.3.2.5.1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/e1071_1.6-7.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/plyr_1.8.3.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/digest_0.6.8.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/gtable_0.1.2.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/stringi_1.0-1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/magrittr_1.5.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/stringr_1.0.0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/reshape2_1.4.1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/dichromat_2.0-0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/colorspace_1.2-6.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/munsell_0.4.2.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/labeling_0.3.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/scales_0.3.0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/proto_0.3-10.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/ggplot2_1.0.1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/minqa_1.2.4.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/nloptr_1.0.4.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/lme4_1.1-10.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/pbkrtest_0.4-2.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/SparseM_1.7.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/MatrixModels_0.4-1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/quantreg_5.19.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/car_2.1-0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/caret_6.0-58.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/iterators_1.0.8.tar.gz?raw=true</package>
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−
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/pROC_1.8.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/Formula_1.2-1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/latticeExtra_0.6-26.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/acepack_1.3-3.3.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/gridExtra_2.0.0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/Hmisc_3.17-0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/pracma_1.8.6.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/survival_2.38-3.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/lars_1.2.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/glmnet_2.0-2.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/numDeriv_2014.2-1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/lava_1.4.1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/prodlim_1.5.5.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/polspline_1.1.12.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/mvtnorm_1.0-3.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/TH.data_1.0-6.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/zoo_1.7-12.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/sandwich_2.3-4.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/multcomp_1.4-1.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rms_4.4-0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/pec_2.4.7.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/profileModel_0.5-9.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/brglm_0.5-9.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/gtools_3.5.0.tar.gz?raw=true</package>
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−                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/BradleyTerry2_1.0-6.tar.gz?raw=true</package>
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−                </action>
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−            </actions>
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−        </install>
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−        <readme>
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−        Yee-Haw! Lasso for Galaxy!
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−        </readme>
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−    </package>
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−</tool_dependency>