# HG changeset patch
# User fubar
# Date 1380076612 14400
# Node ID 8403178099155c4d155b63bc8e8897f0a25eabed
# Parent  42e2f9e2c587cd9ba1b4bf113db3e1f80ff4f064
Uploaded

diff -r 42e2f9e2c587 -r 840317809915 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Sep 24 19:44:54 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 22:36:52 2013 -0400
@@ -1,10 +1,11 @@
+
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="numpy" version="1.7">
-        <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="ghostscript" version="9.07">
-        <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="package_weblogo" version="3.3">
         <install version="1.0">
@@ -14,14 +15,13 @@
                     <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                         <package name="ghostscript" version="9.07" />
                     </repository>
-                    <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                    <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                         <package name="numpy" version="1.7" />
                     </repository>
                 </action>
                 <!-- install weblogo -->
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">echo "### PYTHONPATH = $PYTHONPATH, PYTHONPATH_NUMPY = $PYTHONPATH_NUMPY"</action>
                 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH &amp;&amp; 
                     python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                 <action type="set_environment">