Mercurial > repos > fubar > package_weblogo_3_3

diff tool_dependencies.xml @ 5:d29baafe12a1 draft

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Uploaded
author fubar
date Tue, 24 Sep 2013 22:47:19 -0400
parents 6168020ba3af
children 6ec6afd35751
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 24 22:42:53 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 22:47:19 2013 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="numpy" version="1.7">
+    <package name="numpy" version="1.7.1">
         <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="ghostscript" version="9.07">
@@ -9,18 +9,19 @@
     <package name="package_weblogo" version="3.3">
         <install version="1.0">
             <actions>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
                     <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                         <package name="ghostscript" version="9.07" />
                     </repository>
-                    <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="numpy" version="1.7" />
+                    <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="numpy" version="1.7.1" />
                     </repository>
                 </action>
                 <!-- install weblogo -->
-                <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action>
                 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH &amp;&amp; 
                     python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                 <action type="set_environment">