Mercurial > repos > fubar > package_weblogo_3_3
comparison tool_dependencies.xml @ 2:840317809915 draft
Uploaded
| author | fubar |
|---|---|
| date | Tue, 24 Sep 2013 22:36:52 -0400 |
| parents | 42e2f9e2c587 |
| children | 05d3efb07ab9 |
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| 1:42e2f9e2c587 | 2:840317809915 |
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| 1 | |
| 1 <?xml version="1.0"?> | 2 <?xml version="1.0"?> |
| 2 <tool_dependency> | 3 <tool_dependency> |
| 3 <package name="numpy" version="1.7"> | 4 <package name="numpy" version="1.7"> |
| 4 <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 5 <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 6 </package> |
| 6 <package name="ghostscript" version="9.07"> | 7 <package name="ghostscript" version="9.07"> |
| 7 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 8 <repository name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 8 </package> | 9 </package> |
| 9 <package name="package_weblogo" version="3.3"> | 10 <package name="package_weblogo" version="3.3"> |
| 10 <install version="1.0"> | 11 <install version="1.0"> |
| 11 <actions> | 12 <actions> |
| 12 <!-- populate the environment variables from the dependend repos --> | 13 <!-- populate the environment variables from the dependend repos --> |
| 13 <action type="set_environment_for_install"> | 14 <action type="set_environment_for_install"> |
| 14 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 15 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 15 <package name="ghostscript" version="9.07" /> | 16 <package name="ghostscript" version="9.07" /> |
| 16 </repository> | 17 </repository> |
| 17 <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 18 <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 18 <package name="numpy" version="1.7" /> | 19 <package name="numpy" version="1.7" /> |
| 19 </repository> | 20 </repository> |
| 20 </action> | 21 </action> |
| 21 <!-- install weblogo --> | 22 <!-- install weblogo --> |
| 23 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 22 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action> | 24 <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action> |
| 23 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 24 <action type="shell_command">echo "### PYTHONPATH = $PYTHONPATH, PYTHONPATH_NUMPY = $PYTHONPATH_NUMPY"</action> | |
| 25 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH && | 25 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH && |
| 26 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> | 26 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> |
| 27 <action type="set_environment"> | 27 <action type="set_environment"> |
| 28 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 28 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 29 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | 29 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |