view tool_dependencies.xml @ 0:0fa7feb9b4a8 draft default tip

Uploaded

+
−<?xml version="1.0"?>
+
−<tool_dependency>
+
−    <package name="rnastar" version="2.3.1z">
+
−        <install version="1.0">
+
−            <actions>
+
−                <action type="download_by_url">ftp://ftp2.cshl.edu/gingeraslab/tracks/STARrelease/Alpha/STAR_2.3.1z.tgz</action>
+
−                <action type="shell_command">make</action>
+
−                <action type="make_directory">$INSTALL_DIR</action>
+
−                <action type="make_directory">$INSTALL_DIR/bin</action>
+
−                <action type="move_file">
+
−                    <source>STAR</source>
+
−                    <destination>$INSTALL_DIR/bin</destination>
+
−                </action>
+
−                <action type="set_environment">
+
−                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+
−                </action>
+
−                <action type="set_environment">
+
−                    <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
+
−                </action>
+
−            </actions>
+
−        </install>
+
−        <readme>
+
−Installs the STAR binary for rnastar - see https://code.google.com/p/rna-star/
+
−        </readme>
+
−    </package>
+
−</tool_dependency>
+
−