# HG changeset patch
# User fubar
# Date 1374891338 14400
# Node ID 5b9e639ef5233d492a064154957ca3faaf643a2a
# Parent  6f249fadd4ec46b779a574010edf0b5864010f31
Uploaded

diff -r 6f249fadd4ec -r 5b9e639ef523 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jul 26 21:50:48 2013 -0400
+++ b/tool_dependencies.xml	Fri Jul 26 22:15:38 2013 -0400
@@ -11,11 +11,31 @@
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>
                 <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+
                 <action type="download_file">http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</action>
                 <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
                 export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
                 export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
                 R CMD INSTALL stringr_0.6.2.tar.gz -l $INSTALL_DIR </action>
+
+                <action type="download_file">http://cran.r-project.org/src/contrib/caTools_1.14.tar.gz</action>
+                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
+                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
+                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
+                R CMD INSTALL caTools_1.14.tar.gz -l $INSTALL_DIR </action>
+
+                <action type="download_file">http://cran.r-project.org/src/contrib/gdata_2.13.2.tar.gz</action>
+                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
+                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
+                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
+                R CMD INSTALL gdata_2.13.2.tar.gz -l $INSTALL_DIR </action>
+
+                <action type="download_file">http://cran.r-project.org/src/contrib/gtools_3.0.0.tar.gz</action>
+                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
+                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
+                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
+                R CMD INSTALL gtools_3.0.0.tar.gz -l $INSTALL_DIR </action>
+                
                 <action type="download_file">http://cran.r-project.org/src/contrib/gplots_2.11.3.tar.gz</action>
                 <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
                 export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;