# HG changeset patch
# User fubar
# Date 1374893156 14400
# Node ID 1ffaf84120792f2b9268513c03f96047645ca237
# Parent  5b9e639ef5233d492a064154957ca3faaf643a2a
Uploaded

diff -r 5b9e639ef523 -r 1ffaf8412079 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jul 26 22:15:38 2013 -0400
+++ b/tool_dependencies.xml	Fri Jul 26 22:45:56 2013 -0400
@@ -11,41 +11,6 @@
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>
                 <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
-
-                <action type="download_file">http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</action>
-                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
-                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
-                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
-                R CMD INSTALL stringr_0.6.2.tar.gz -l $INSTALL_DIR </action>
-
-                <action type="download_file">http://cran.r-project.org/src/contrib/caTools_1.14.tar.gz</action>
-                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
-                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
-                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
-                R CMD INSTALL caTools_1.14.tar.gz -l $INSTALL_DIR </action>
-
-                <action type="download_file">http://cran.r-project.org/src/contrib/gdata_2.13.2.tar.gz</action>
-                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
-                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
-                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
-                R CMD INSTALL gdata_2.13.2.tar.gz -l $INSTALL_DIR </action>
-
-                <action type="download_file">http://cran.r-project.org/src/contrib/gtools_3.0.0.tar.gz</action>
-                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
-                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
-                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
-                R CMD INSTALL gtools_3.0.0.tar.gz -l $INSTALL_DIR </action>
-                
-                <action type="download_file">http://cran.r-project.org/src/contrib/gplots_2.11.3.tar.gz</action>
-                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
-                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
-                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
-                R CMD INSTALL gplots_2.11.3.tar.gz -l $INSTALL_DIR </action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
-                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
-                </action>
             </actions>
         </install>
         <readme>Modified from an older version of R by Boris by Ross Lazarus for R 3.0