diff tool_dependencies.xml @ 12:925b350727b2 draft

Uploaded

--- a/tool_dependencies.xml	Fri Jul 26 19:17:20 2013 -0400
+++ b/tool_dependencies.xml	Fri Jul 26 20:49:58 2013 -0400
@@ -11,6 +11,17 @@
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>
                 <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+
+                <action type="download_by_url">http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</action>
+                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
+                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
+                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
+                R CMD INSTALL stringr_0.6.2.tar.gz -l $INSTALL_DIR </action>
+                <action type="download_by_url">http://cran.r-project.org/src/contrib/gplots_2.11.3.tar.gz</action>
+                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
+                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
+                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
+                R CMD INSTALL gplots_2.11.3.tar.gz -l $INSTALL_DIR </action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
                     <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
@@ -23,7 +34,7 @@
                 Be nice to have interactive variables for fabric installs.
                 R is a free software environment for statistical computing and graphics
                 WARNING: See custom compilation options above
-                
+                Note I've also added some R dependencies                
        </readme>
     </package>
 </tool_dependency>