comparison tool_dependencies.xml @ 19:eacbc4863a8b draft default tip

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18:6e89ec508745

<?xml version="1.0"?>
<tool_dependency>
    <package name="r3" version="3.0.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                        <package name="readline" version="6.2" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR</action>
                <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Modified from an older version of R by Boris by Ross Lazarus for R 3.0
                Silly having melbourne CRAN hardwired but that's what I test with.
                Be nice to have interactive variables for fabric installs.
                R is a free software environment for statistical computing and graphics
                WARNING: See custom compilation options above
                Note I've also added some R dependencies                
       </readme>
    </package>
</tool_dependency>

19:eacbc4863a8b

<?xml version="1.0"?>
<tool_dependency>
    <package name="readline" version="6.2">
        <repository changeset_revision="246f31787ca1" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
    </package>
    <package name="ncurses" version="5.9">
        <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="r303" version="3.0.3">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="246f31787ca1" name="package_readline_6_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                        <package name="readline" version="6.2" />
                    </repository>
                    <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="ncurses" version="5.9" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR</action>
                <action type="shell_command">
                    ./configure --prefix=$INSTALL_DIR CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib  --with-x=no &amp;&amp; make &amp;&amp; make install
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
                    <environment_variable action="set_to" name="RHOME">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Modified from an older version of R by Boris by Ross Lazarus for R 3.0
                PRERELEASE as at feb 27 2014
                Be nice to have interactive variables for fabric installs.
                R is a free software environment for statistical computing and graphics
                WARNING: See custom compilation options above
                
       </readme>
    </package>
</tool_dependency>