# HG changeset patch # User fubar # Date 1374886116 14400 # Node ID 6e04cd0a5bc3002ad132ea8db258b3c4ca74b1a0 # Parent d9b8df220fd5e182c6031dca3345ebf2b677d56b Uploaded diff -r d9b8df220fd5 -r 6e04cd0a5bc3 tool_dependencies.xml --- a/tool_dependencies.xml Fri Jul 26 20:33:58 2013 -0400 +++ b/tool_dependencies.xml Fri Jul 26 20:48:36 2013 -0400 @@ -1,18 +1,40 @@ + - + + http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz + + + + + $INSTALL_DIR - http://downloads.ghostscript.com/public/ghostscript-9.07.tar.gz - ./configure --prefix=$INSTALL_DIR - make - make install + ./configure --with-blas --with-lapack --enable-R-shlib --with-x=no --prefix=$INSTALL_DIR && make && make install + + http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz + export PATH=$INSTALL_DIR/lib/R/bin:$PATH && + export R_HOME=$INSTALL_DIR/lib/R && + export R_LIBS=$INSTALL_DIR/lib/R/library && + R CMD INSTALL stringr_0.6.2.tar.gz -l $INSTALL_DIR + http://cran.r-project.org/src/contrib/gplots_2.11.3.tar.gz + export PATH=$INSTALL_DIR/lib/R/bin:$PATH && + export R_HOME=$INSTALL_DIR/lib/R && + export R_LIBS=$INSTALL_DIR/lib/R/library && + R CMD INSTALL gplots_2.11.3.tar.gz -l $INSTALL_DIR - $INSTALL_DIR/bin + $INSTALL_DIR/lib/R + $INSTALL_DIR/lib/R/library + $INSTALL_DIR/lib/R/bin - ghostscript needed for compressing pdfs - + Modified from an older version of R by Boris by Ross Lazarus for R 3.0 + Silly having melbourne CRAN hardwired but that's what I test with. + Be nice to have interactive variables for fabric installs. + R is a free software environment for statistical computing and graphics + WARNING: See custom compilation options above + Note I've also added some R dependencies +