view tool_dependencies.xml @ 1:6e04cd0a5bc3 draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="package_r3" version="3.0.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                        <package name="readline" version="6.2" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR</action>
                <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>

                <action type="download_by_url">http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</action>
                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
                R CMD INSTALL stringr_0.6.2.tar.gz -l $INSTALL_DIR </action>
                <action type="download_by_url">http://cran.r-project.org/src/contrib/gplots_2.11.3.tar.gz</action>
                <action type="shell_command"> export PATH=$INSTALL_DIR/lib/R/bin:$PATH &amp;&amp;
                export R_HOME=$INSTALL_DIR/lib/R &amp;&amp;
                export R_LIBS=$INSTALL_DIR/lib/R/library &amp;&amp;
                R CMD INSTALL gplots_2.11.3.tar.gz -l $INSTALL_DIR </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Modified from an older version of R by Boris by Ross Lazarus for R 3.0
                Silly having melbourne CRAN hardwired but that's what I test with.
                Be nice to have interactive variables for fabric installs.
                R is a free software environment for statistical computing and graphics
                WARNING: See custom compilation options above
                Note I've also added some R dependencies                
       </readme>
    </package>
</tool_dependency>