Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 20:9aa25eb1365b draft

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Uploaded
author fubar
date Thu, 13 Jun 2013 05:58:30 -0400
parents 2ab11896fd22
children 349261fef17b
files htseq_bams_to_count_matrix/tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Jun 13 03:37:30 2013 -0400
+++ b/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Jun 13 05:58:30 2013 -0400
@@ -22,12 +22,8 @@
                 </action>
                 <!-- install matplotlib -->
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                 <action type="shell_command">echo "ls $FREETYPE_INCLUDE_DIR =:"  </action>
-                 <action type="shell_command">`ls $FREETYPE_INCLUDE_DIR` </action>
-                 <action type="shell_command">echo "ls $FREETYPE_INCLUDE_DIR/freetype2/ =:"  </action>
-                 <action type="shell_command">`ls $FREETYPE_INCLUDE_DIR/freetype2/` </action>
                 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY &amp;&amp; 
-                    export CPLUS_INCLUDE_PATH=$FREETYPE_INCLUDE_DIR:$FREETYPE_INCLUDE_DIR/freetype2/ &amp;&amp; 
+                    export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:$FREETYPE_INCLUDE_DIR:$FREETYPE_INCLUDE_DIR/freetype2/$CPLUS_INCLUDE_PATH &amp;&amp; 
                     export LIBRARY_PATH=$FREETYPE_LIB_DIR &amp;&amp; 
                     python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                 <action type="set_environment">