# HG changeset patch
# User fubar
# Date 1370569689 14400
# Node ID 71f4b3d0e6814251512102c6837828c1a5a805ab
# Parent  1deb788531e587788fbd2456b9948e9179aa9033
Uploaded

diff -r 1deb788531e5 -r 71f4b3d0e681 htseq_bams_to_count_matrix/tool_dependencies.xml
--- a/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Jun 06 21:37:21 2013 -0400
+++ b/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Jun 06 21:48:09 2013 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="package_numpy_1_7" version="1.7.1">
+    <package name="numpy" version="1.7.1">
         <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="freetype" version="2.4.11">
@@ -12,16 +12,15 @@
                 <!-- first action is always downloading -->
                 <action type="download_by_url">http://downloads.sourceforge.net/project/matplotlib/matplotlib/matplotlib-1.2.1/matplotlib-1.2.1.tar.gz</action>
 
-                <!-- populate the environment variables from the dependend repos
+                <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
-                        <package name="package_numpy_1_7" version="1.7.1">
-                            <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu" prior_installation_required="True"/>
+                        <package name="numpy" toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.7.1">
+                            <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
                         </package>
-                        <package name="freetype" version="2.4.11">
-                            <repository name="package_freetype_2_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" prior_installation_required="True"/>
+                        <package name="freetype" toolshed="http://testtoolshed.g2.bx.psu.edu" version="2.4.11">
+                            <repository name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
                         </package>
                 </action>
-                 -->
                 <!-- install matplotlib -->
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY &amp;&amp;