Mercurial > repos > fubar > htseq_bams_to_count_matrix
view test-data/rn4_chr20_100k.gtf @ 49:c57e63d1a9d2 draft
working test. first upload
| author | fubar |
|---|---|
| date | Fri, 02 Jan 2015 03:32:39 -0500 |
| parents | 390cb852aae7 |
| children |
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chr20 protein_coding CDS 801 1238 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding exon 801 1238 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding CDS 1742 1976 . + 0 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding exon 1742 1976 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding CDS 2016 2177 . + 2 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding exon 2016 2177 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding CDS 2263 2342 . + 2 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding exon 2263 2342 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding CDS 2345 2533 . + 0 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding exon 2345 2533 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562"; chr20 protein_coding CDS 19528 19708 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 19528 19708 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 19528 19708 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 19528 19708 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding start_codon 19528 19530 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding start_codon 19528 19530 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding CDS 21979 22014 . + 2 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 21979 22014 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 25349 25525 . + 2 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 25349 25525 . + 2 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 25349 25525 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 25349 25525 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding CDS 35197 35476 . + 2 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 35197 35476 . + 2 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 35197 35476 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 35197 35476 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding CDS 36764 36883 . + 1 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 36764 36883 . + 1 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 36764 36883 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 36764 36883 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding CDS 49040 49276 . + 1 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 49040 49276 . + 1 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 49040 49276 . + . exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 49040 49276 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding CDS 55193 55331 . + 1 exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 55193 55331 . + 1 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 55193 55331 . + . exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 55193 55331 . + . exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding CDS 55883 56011 . + 0 exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding CDS 55883 56011 . + 0 exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 55883 56124 . + . exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding exon 55883 56124 . + . exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding stop_codon 56012 56014 . + 0 exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451"; chr20 protein_coding stop_codon 56012 56014 . + 0 exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451"; chr20 protein_coding exon 66518 66785 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding CDS 66729 66785 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding start_codon 66729 66731 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding CDS 75931 76040 . + 0 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding exon 75931 76040 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding CDS 76165 76290 . + 1 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding exon 76165 76290 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding CDS 79941 80047 . + 1 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding exon 79941 80047 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding CDS 80692 80873 . + 2 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding exon 80692 80873 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding CDS 81142 81294 . + 0 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding exon 81142 81536 . + . exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding stop_codon 81295 81297 . + 0 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592"; chr20 protein_coding exon 92810 93748 . - . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091"; chr20 protein_coding stop_codon 92810 92812 . - 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091"; chr20 protein_coding CDS 92813 93748 . - 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; protein_id "ENSRNOP00000042115"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091"; chr20 protein_coding start_codon 93746 93748 . - 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091";