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1 # output generated by /mnt/galaxy/shed_tools/testtoolshed.g2.bx.psu.edu/repos/fubar/genomic_association_tester/640b1432caa4/genomic_association_tester/rlGAT/gat-run.py --ignore-segment-tracks --log=/mnt/galaxy/tmp/job_working_directory/000/102/galaxy_dataset_195.dat --num-samples=1000 --segment-file /mnt/galaxy/files/000/dataset_185.dat --workspace-file /mnt/galaxy/files/000/dataset_186.dat --annotation-file /mnt/galaxy/files/000/dataset_188.dat
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2 # job started at Thu Aug 29 05:50:37 2013 on server-d96376c2-cd09-4b9c-af66-3046d5eba53e -- 56ea3024-f0c4-4f44-964c-2fec5b8d363e
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3 # pid: 18342, system: Linux 3.2.0-49-virtual #75-Ubuntu SMP Tue Jun 18 17:59:38 UTC 2013 x86_64
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4 # annotation_files : [\'/mnt/galaxy/files/000/dataset_188.dat\']
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5 # bucket_size : 1
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6 # cache : None
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7 # conditional : unconditional
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8 # conditional_expansion : None
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9 # conditional_extension : None
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10 # counters : []
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11 # enable_split_tracks : False
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12 # ignore_segment_tracks : True
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13 # input_filename_counts : None
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14 # input_filename_descriptions : None
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15 # input_filename_results : None
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16 # isochore_files : None
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17 # loglevel : 1
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18 # nbuckets : 100000
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19 # null : default
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20 # num_samples : 1000
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21 # num_threads : 0
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22 # output_bed : []
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23 # output_counts_pattern : None
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24 # output_filename_pattern : %s
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25 # output_force : False
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26 # output_order : fold
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27 # output_plots_pattern : None
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28 # output_samples_pattern : None
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29 # output_stats : []
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30 # output_tables_pattern : %s.tsv.gz
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31 # pseudo_count : 1.0
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32 # pvalue_method : empirical
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33 # qvalue_lambda : None
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34 # qvalue_method : BH
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35 # qvalue_pi0_method : smoother
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36 # restrict_workspace : False
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37 # sample_files : []
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38 # sampler : annotator
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39 # segment_files : [\'/mnt/galaxy/files/000/dataset_185.dat\']
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40 # shift_expansion : 2.0
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41 # shift_extension : 0
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42 # stderr : <open file \'<stderr>\', mode \'w\' at 0x2b40e39fa270>
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43 # stdin : <open file \'<stdin>\', mode \'r\' at 0x2b40e39fa150>
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44 # stdlog : <open file \'/mnt/galaxy/tmp/job_working_directory/000/102/galaxy_dataset_195.dat\', mode \'a\' at 0x2aaed20>
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45 # stdout : <open file \'<stdout>\', mode \'w\' at 0x2b40e39fa1e0>
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46 # timeit_file : None
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47 # timeit_header : None
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48 # timeit_name : all
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49 # truncate_segments_to_workspace : False
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50 # truncate_workspace_to_annotations : False
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51 # workspace_files : [\'/mnt/galaxy/files/000/dataset_186.dat\']
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52 2013-08-29 05:50:37,596 INFO segments: reading tracks from 1 files
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53 2013-08-29 05:50:37,604 INFO segments: read 556 tracks from 1 files
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54 2013-08-29 05:50:37,606 INFO merged all segments into one track with 1 segments
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55 2013-08-29 05:50:37,606 INFO annotations: reading tracks from 1 files
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56 2013-08-29 05:50:38,254 INFO annotations: read 1 tracks from 1 files
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57 2013-08-29 05:50:38,264 INFO workspaces: reading tracks from 1 files
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58 2013-08-29 05:50:38,264 INFO workspaces: read 1 tracks from 1 files
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59 2013-08-29 05:50:38,264 INFO collapsing workspaces
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60 2013-08-29 05:50:38,264 INFO intervals loaded in 0 seconds
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61 2013-08-29 05:50:38,266 INFO collecting observed counts
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62 2013-08-29 05:50:38,267 INFO starting sampling
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63 2013-08-29 05:50:38,267 INFO sampling: merged: 1/1
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64 2013-08-29 05:50:38,267 INFO performing unconditional sampling
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65 2013-08-29 05:50:38,268 INFO workspace without conditioning: 25 segments, 3095693983 nucleotides
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66 2013-08-29 05:50:38,268 INFO workspace after conditioning: 25 segments, 3095693983 nucleotides
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67 2013-08-29 05:50:38,270 INFO sampling started
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68 2013-08-29 05:50:38,291 INFO 0/1000 done ( 0.00)
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69 2013-08-29 05:50:40,016 INFO 100/1000 done (10.00)
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70 2013-08-29 05:50:41,747 INFO 200/1000 done (20.00)
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71 2013-08-29 05:50:43,486 INFO 300/1000 done (30.00)
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72 2013-08-29 05:50:45,207 INFO 400/1000 done (40.00)
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73 2013-08-29 05:50:46,960 INFO 500/1000 done (50.00)
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74 2013-08-29 05:50:48,733 INFO 600/1000 done (60.00)
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75 2013-08-29 05:50:50,451 INFO 700/1000 done (70.00)
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76 2013-08-29 05:50:52,175 INFO 800/1000 done (80.00)
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77 2013-08-29 05:50:53,884 INFO 900/1000 done (90.00)
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78 2013-08-29 05:50:55,583 INFO sampling completed
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79 2013-08-29 05:50:55,586 INFO sampling finished:
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80 2013-08-29 05:50:55,586 INFO computing PValue statistics
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81 2013-08-29 05:50:55,589 INFO computing FDR statistics
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82 # job finished in 17 seconds at Thu Aug 29 05:50:55 2013 -- 19.27 0.17 0.01 0.01 -- 56ea3024-f0c4-4f44-964c-2fec5b8d363e
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