Mercurial > repos > fubar > freebayes099
changeset 1:5022cd74093c draft
Uploaded
| author | fubar |
|---|---|
| date | Sat, 28 Sep 2013 06:48:44 -0400 |
| parents | 9a7e8a919c78 |
| children | 322df5780b19 |
| files | freebayes-d291dc763c4c/freebayes.xml |
| diffstat | 1 files changed, 10 insertions(+), 2 deletions(-) [+] |
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--- a/freebayes-d291dc763c4c/freebayes.xml Sat Sep 28 05:57:27 2013 -0400 +++ b/freebayes-d291dc763c4c/freebayes.xml Sat Sep 28 06:48:44 2013 -0400 @@ -433,6 +433,7 @@ </test> </tests> <help> + **What it does** This tool uses FreeBayes 0.9.9 to call SNPS given a reference sequence and a BAM alignment file. @@ -441,9 +442,10 @@ In addition to substantial performance improvements over its predecessors (PolyBayes, GigaBayes, and BamBayes), it expands the scope of SNP and small-indel variant calling to populations of individuals with heterogeneous copy number. FreeBayes is currently under active development. -Go `here <http://bioinformatics.bc.edu/marthlab/FreeBayes>`_ for details on FreeBayes. +Go FreeBayesMarth_ for details on FreeBayes. -or `here <https://github.com/ekg/freebayes>`_ +or FreeBayesGit_ for source + ------ **Inputs** @@ -670,11 +672,17 @@ ------ + **Citation** For the underlying tool, please cite `Erik Garrison and Gabor Marth. Haplotype-based variant detection from short-read sequencing <http://arxiv.org/abs/1207.3907>`_. If you use this tool in Galaxy, please cite Blankenberg D, et al. *In preparation.* +.. _FreeBayesMarth: http://bioinformatics.bc.edu/marthlab/FreeBayes + +.. _FreeBayesGit: https://github.com/ekg/freebayes + +.. _Clustfirst: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003732.html </help> </tool>