Mercurial > repos > fubar > fastqc_dist_0_10_1

changeset 3:7a4d34bbf434 draft default tip

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Uploaded
author fubar
date Wed, 05 Jun 2013 23:50:53 -0400
parents b7cfd92bf9f9
children
files dependencies/fastqc_dist_0.10.1/tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/dependencies/fastqc_dist_0.10.1/tool_dependencies.xml	Wed Jun 05 22:27:36 2013 -0400
+++ b/dependencies/fastqc_dist_0.10.1/tool_dependencies.xml	Wed Jun 05 23:50:53 2013 -0400
@@ -6,17 +6,13 @@
                 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
                 <action type="move_directory_files">
                     <source_directory>../FastQC</source_directory>
-                    <destination_directory>$INSTALL_DIR/fastqc_dist_0.10.1</destination_directory>
+                    <destination_directory>$INSTALL_DIR/fastqc_dist</destination_directory>
                 </action>                
-                <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist_0.10.1/fastqc</action>
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist/fastqc</action>
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist_0.10.1</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist</environment_variable>
                 </action>
             </actions>
         </install>
-        <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 
-                available to all potential execution nodes for this tool to work.
-                Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation
-        </readme>
     </package>
 </tool_dependency>