# HG changeset patch
# User fubar
# Date 1370319132 14400
# Node ID 71899f689406f06b8a6e9fbb6e0e66c82fa58214
# Parent  9995fd1f8daacb8c20a0ba7af1f7fea8e57c81a8
Uploaded

diff -r 9995fd1f8daa -r 71899f689406 FastQC/rgFastQC.py
--- a/FastQC/rgFastQC.py	Tue Jun 04 00:08:58 2013 -0400
+++ b/FastQC/rgFastQC.py	Tue Jun 04 00:12:12 2013 -0400
@@ -37,13 +37,13 @@
         self.opts = opts
         
     def getFileString(fpath, outpath):
-    	"""
-    	format a nice file size string
-    	"""
-    	size = ''
-    	fp = os.path.join(outpath, fpath)
-    	s = fpath
-    	if os.path.isfile(fp):
+        """
+        format a nice file size string
+        """
+        size = ''
+        fp = os.path.join(outpath, fpath)
+        s = fpath
+        if os.path.isfile(fp):
             n = float(os.path.getsize(fp))
             if n > 2**20:
                 size = ' (%1.1f MB)' % (n/2**20)
@@ -160,7 +160,7 @@
         for i,f in enumerate(flist):
              if not(os.path.isdir(f)):
                  fn = os.path.split(f)[-1]
-                 res.append('<tr><td><a href="%s">%s</a></td></tr>\n' % (fn,getFileString(fn, self.opts.outputdir)))
+                 res.append('<tr><td><a href="%s">%s</a></td></tr>\n' % (fn,self.getFileString(fn, self.opts.outputdir)))
         res.append('</table>\n') 
         res.append('<a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>\n')
         res.append('FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing\n</div>')