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comparison FastQC/tool_dependencies.xml @ 2:9995fd1f8daa draft

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author fubar
date Tue, 04 Jun 2013 00:08:58 -0400
parents 57f890a5fa73
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1:7e59ebcb25db 2:9995fd1f8daa
3 <package name="fastqc" version="0.10.1"> 3 <package name="fastqc" version="0.10.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> 6 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
7 <action type="move_directory_files"> 7 <action type="move_directory_files">
8 <source_directory>FastQC</source_directory> 8 <source_directory>../FastQC</source_directory>
9 <destination_directory>$INSTALL_DIR/FastQC</destination_directory> 9 <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
10 </action> 10 </action>
11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> 11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable> 13 <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>