comparison FastQC/tool_dependencies.xml @ 0:57f890a5fa73 draft

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0:57f890a5fa73

<?xml version="1.0"?>
<tool_dependency>
    <package name="fastqc" version="0.10.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
                <action type="move_directory_files">
                    <source_directory>FastQC</source_directory>
                    <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
                </action>                
                <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
                <action type="set_environment">
                    <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable>
                </action>
            </actions>
        </install>
        <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 
                available to all potential execution nodes for this tool to work.
                Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme>
    </package>
</tool_dependency>