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1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN">
2 <html>
3 <head><title>dataset_100.dat FastQC Report</title>
4
5 <style type="text/css">
6
7 body {
8 font-family: sans-serif;
9 color: #000000;
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16 div.header {
17 background-color: #EEEEEE;
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21 font-size: 200%;
22 font-weight: bold;
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26 background-color: #EEEEEE;
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29 padding: 0.5em;
30 font-size: 100%;
31 font-weight: bold;
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34 div.main {
35 margin-left: 2em;
36 margin-right: 2em;
37 }
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39 div.module {
40 padding-bottom:1.5em;
41 padding-top:1.5em;
42 }
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44 a {
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48 a:hover {
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52 h2 {
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58 table {
59 margin-left: 3em;
60 text-align: center;
61 }
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63 th {
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65 background-color: #000080;
66 color: #FFFFFF;
67 padding: 0.4em;
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70 td {
71 font-family: monospace;
72 text-align: left;
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91 }
92 </style>
93
94 </head>
95 <body>
96 <div class="header"><img src="fastqc_icon.png">FastQC Report</div>
97 <div class="main">
98 <h3>Sun 29 May 2011</h3>
99 <h3>dataset_100.dat</h3>
100 <h2 id="summary">Summary</h2>
101 <ul>
102 <li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li>
103 <li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li>
104 <li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li>
105 <li><img src="tick.png" alt="[PASS]"> <a href="#M3">Per base sequence content</a></li>
106 <li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li>
107 <li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li>
108 <li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li>
109 <li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li>
110 <li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li>
111 <li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li>
112 <li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li>
113 </ul>
114 <div class="module"><h2 id="M0"><img src="tick.png" alt="[FAIL]"> Basic Statistics</h2>
115 <table>
116 <tr>
117 <th>Measure</th>
118 <th>Value</th>
119 </tr>
120 <tr>
121 <td>Filename</td>
122 <td>dataset_100.dat</td>
123 </tr>
124 <tr>
125 <td>File type</td>
126 <td>Conventional base calls</td>
127 </tr>
128 <tr>
129 <td>Encoding</td>
130 <td>Sanger / Illumina 1.9</td>
131 </tr>
132 <tr>
133 <td>Total Sequences</td>
134 <td>5000</td>
135 </tr>
136 <tr>
137 <td>Sequence length</td>
138 <td>54</td>
139 </tr>
140 <tr>
141 <td>%GC</td>
142 <td>43</td>
143 </tr>
144 </table>
145 <p><a href="#summary">Back to summary</a></div>
146 <div class="module"><h2 id="M1"><img src="warning.png" alt="[FAIL]"> Per base sequence quality</h2>
147 <p><img class="indented" src="per_base_quality.png"></p>
148 <p><a href="#summary">Back to summary</a></div>
149 <div class="module"><h2 id="M2"><img src="warning.png" alt="[FAIL]"> Per sequence quality scores</h2>
150 <p><img class="indented" src="per_sequence_quality.png"></p>
151 <p><a href="#summary">Back to summary</a></div>
152 <div class="module"><h2 id="M3"><img src="tick.png" alt="[FAIL]"> Per base sequence content</h2>
153 <p><img class="indented" src="per_base_sequence_content.png"></p>
154 <p><a href="#summary">Back to summary</a></div>
155 <div class="module"><h2 id="M4"><img src="tick.png" alt="[FAIL]"> Per base GC content</h2>
156 <p><img class="indented" src="per_base_gc_content.png"></p>
157 <p><a href="#summary">Back to summary</a></div>
158 <div class="module"><h2 id="M5"><img src="warning.png" alt="[FAIL]"> Per sequence GC content</h2>
159 <p><img class="indented" src="per_sequence_gc_content.png"></p>
160 <p><a href="#summary">Back to summary</a></div>
161 <div class="module"><h2 id="M6"><img src="tick.png" alt="[FAIL]"> Per base N content</h2>
162 <p><img class="indented" src="per_base_n_content.png"></p>
163 <p><a href="#summary">Back to summary</a></div>
164 <div class="module"><h2 id="M7"><img src="tick.png" alt="[FAIL]"> Sequence Length Distribution</h2>
165 <p><img class="indented" src="sequence_length_distribution.png"></p>
166 <p><a href="#summary">Back to summary</a></div>
167 <div class="module"><h2 id="M8"><img src="tick.png" alt="[FAIL]"> Sequence Duplication Levels</h2>
168 <p><img class="indented" src="duplication_levels.png"></p>
169 <p><a href="#summary">Back to summary</a></div>
170 <div class="module"><h2 id="M9"><img src="warning.png" alt="[FAIL]"> Overrepresented sequences</h2>
171 <table>
172 <tr>
173 <th>Sequence</th>
174 <th>Count</th>
175 <th>Percentage</th>
176 <th>Possible Source</th>
177 </tr>
178 <tr>
179 <td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td>
180 <td>7</td>
181 <td>0.13999999999999999</td>
182 <td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td>
183 </tr>
184 <tr>
185 <td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td>
186 <td>7</td>
187 <td>0.13999999999999999</td>
188 <td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td>
189 </tr>
190 </table>
191 <p><a href="#summary">Back to summary</a></div>
192 <div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2>
193 <p><img class="indented" src="kmer_profiles.png"></p>
194 <table>
195 <tr>
196 <th>Sequence</th>
197 <th>Count</th>
198 <th>Obs/Exp Overall</th>
199 <th>Obs/Exp Max</th>
200 <th>Max Obs/Exp Position</th>
201 </tr>
202 <tr>
203 <td>CCCCC</td>
204 <td>1110</td>
205 <td>9.557241</td>
206 <td>23.193876</td>
207 <td>44</td>
208 </tr>
209 <tr>
210 <td>AAAAA</td>
211 <td>2130</td>
212 <td>4.1300144</td>
213 <td>5.698024</td>
214 <td>7</td>
215 </tr>
216 <tr>
217 <td>CTCCC</td>
218 <td>530</td>
219 <td>3.5749238</td>
220 <td>11.56272</td>
221 <td>11</td>
222 </tr>
223 <tr>
224 <td>CCTCC</td>
225 <td>510</td>
226 <td>3.440021</td>
227 <td>11.56272</td>
228 <td>14</td>
229 </tr>
230 <tr>
231 <td>CTGGG</td>
232 <td>465</td>
233 <td>3.1575248</td>
234 <td>8.314476</td>
235 <td>45</td>
236 </tr>
237 <tr>
238 <td>TGGAA</td>
239 <td>785</td>
240 <td>2.929684</td>
241 <td>6.397646</td>
242 <td>17</td>
243 </tr>
244 <tr>
245 <td>GGGGG</td>
246 <td>335</td>
247 <td>2.9167063</td>
248 <td>10.660779</td>
249 <td>6</td>
250 </tr>
251 <tr>
252 <td>GAATG</td>
253 <td>775</td>
254 <td>2.8923633</td>
255 <td>10.053445</td>
256 <td>20</td>
257 </tr>
258 <tr>
259 <td>CCCAG</td>
260 <td>450</td>
261 <td>2.8820548</td>
262 <td>7.8420706</td>
263 <td>22</td>
264 </tr>
265 <tr>
266 <td>GTGTG</td>
267 <td>520</td>
268 <td>2.7661672</td>
269 <td>6.513526</td>
270 <td>23</td>
271 </tr>
272 <tr>
273 <td>TGTGT</td>
274 <td>660</td>
275 <td>2.744307</td>
276 <td>6.109576</td>
277 <td>27</td>
278 </tr>
279 <tr>
280 <td>GGGAG</td>
281 <td>425</td>
282 <td>2.7401958</td>
283 <td>6.315732</td>
284 <td>6</td>
285 </tr>
286 <tr>
287 <td>ATGGA</td>
288 <td>730</td>
289 <td>2.7244196</td>
290 <td>6.397646</td>
291 <td>20</td>
292 </tr>
293 <tr>
294 <td>GCTGG</td>
295 <td>395</td>
296 <td>2.6821985</td>
297 <td>6.651581</td>
298 <td>16</td>
299 </tr>
300 <tr>
301 <td>GGAGG</td>
302 <td>410</td>
303 <td>2.643483</td>
304 <td>7.894665</td>
305 <td>7</td>
306 </tr>
307 <tr>
308 <td>GGAAT</td>
309 <td>700</td>
310 <td>2.612457</td>
311 <td>7.3115954</td>
312 <td>19</td>
313 </tr>
314 <tr>
315 <td>GCAGG</td>
316 <td>400</td>
317 <td>2.5732677</td>
318 <td>14.17877</td>
319 <td>16</td>
320 </tr>
321 <tr>
322 <td>CCTGG</td>
323 <td>370</td>
324 <td>2.5068476</td>
325 <td>6.6367774</td>
326 <td>7</td>
327 </tr>
328 <tr>
329 <td>CAGCC</td>
330 <td>380</td>
331 <td>2.4337354</td>
332 <td>6.273657</td>
333 <td>4</td>
334 </tr>
335 <tr>
336 <td>TGGGA</td>
337 <td>480</td>
338 <td>2.419065</td>
339 <td>7.40506</td>
340 <td>20</td>
341 </tr>
342 <tr>
343 <td>AATGG</td>
344 <td>645</td>
345 <td>2.4071925</td>
346 <td>5.4836965</td>
347 <td>18</td>
348 </tr>
349 <tr>
350 <td>GCCTC</td>
351 <td>355</td>
352 <td>2.3998654</td>
353 <td>6.622006</td>
354 <td>2</td>
355 </tr>
356 <tr>
357 <td>CCCTC</td>
358 <td>355</td>
359 <td>2.394524</td>
360 <td>8.259085</td>
361 <td>13</td>
362 </tr>
363 <tr>
364 <td>CCAGC</td>
365 <td>370</td>
366 <td>2.3696895</td>
367 <td>6.2736564</td>
368 <td>14</td>
369 </tr>
370 <tr>
371 <td>GGAAG</td>
372 <td>495</td>
373 <td>2.3634295</td>
374 <td>14.031037</td>
375 <td>2</td>
376 </tr>
377 <tr>
378 <td>GGCTG</td>
379 <td>345</td>
380 <td>2.3426795</td>
381 <td>9.97737</td>
382 <td>24</td>
383 </tr>
384 <tr>
385 <td>CAGGA</td>
386 <td>490</td>
387 <td>2.3343499</td>
388 <td>13.99981</td>
389 <td>17</td>
390 </tr>
391 <tr>
392 <td>CCAGG</td>
393 <td>360</td>
394 <td>2.3107867</td>
395 <td>6.2876506</td>
396 <td>11</td>
397 </tr>
398 <tr>
399 <td>CTGTG</td>
400 <td>435</td>
401 <td>2.3088553</td>
402 <td>9.09864</td>
403 <td>44</td>
404 </tr>
405 <tr>
406 <td>GCCTG</td>
407 <td>340</td>
408 <td>2.3035896</td>
409 <td>8.295971</td>
410 <td>5</td>
411 </tr>
412 <tr>
413 <td>TCCCA</td>
414 <td>460</td>
415 <td>2.3028264</td>
416 <td>6.1297736</td>
417 <td>9</td>
418 </tr>
419 <tr>
420 <td>CTGCC</td>
421 <td>340</td>
422 <td>2.2984629</td>
423 <td>8.277508</td>
424 <td>10</td>
425 </tr>
426 <tr>
427 <td>CAGCA</td>
428 <td>480</td>
429 <td>2.2816207</td>
430 <td>10.47649</td>
431 <td>14</td>
432 </tr>
433 <tr>
434 <td>TTCCT</td>
435 <td>545</td>
436 <td>2.256056</td>
437 <td>7.0961456</td>
438 <td>1</td>
439 </tr>
440 <tr>
441 <td>CTCCT</td>
442 <td>415</td>
443 <td>2.1929073</td>
444 <td>6.4701333</td>
445 <td>15</td>
446 </tr>
447 <tr>
448 <td>TCCCC</td>
449 <td>325</td>
450 <td>2.1921701</td>
451 <td>6.6072683</td>
452 <td>28</td>
453 </tr>
454 <tr>
455 <td>CAGGC</td>
456 <td>335</td>
457 <td>2.1503155</td>
458 <td>6.2876506</td>
459 <td>14</td>
460 </tr>
461 <tr>
462 <td>CCCCA</td>
463 <td>335</td>
464 <td>2.1407545</td>
465 <td>6.259694</td>
466 <td>20</td>
467 </tr>
468 <tr>
469 <td>TGGTG</td>
470 <td>400</td>
471 <td>2.127821</td>
472 <td>6.513526</td>
473 <td>9</td>
474 </tr>
475 <tr>
476 <td>CCCCT</td>
477 <td>315</td>
478 <td>2.1247187</td>
479 <td>6.607268</td>
480 <td>12</td>
481 </tr>
482 <tr>
483 <td>GGCAG</td>
484 <td>330</td>
485 <td>2.122946</td>
486 <td>6.301676</td>
487 <td>16</td>
488 </tr>
489 <tr>
490 <td>CTCTG</td>
491 <td>400</td>
492 <td>2.1183603</td>
493 <td>5.187652</td>
494 <td>16</td>
495 </tr>
496 <tr>
497 <td>TTCCA</td>
498 <td>540</td>
499 <td>2.1177678</td>
500 <td>6.7228537</td>
501 <td>28</td>
502 </tr>
503 <tr>
504 <td>CAGAG</td>
505 <td>440</td>
506 <td>2.0961509</td>
507 <td>5.833255</td>
508 <td>28</td>
509 </tr>
510 <tr>
511 <td>CCCTG</td>
512 <td>310</td>
513 <td>2.095657</td>
514 <td>6.622006</td>
515 <td>24</td>
516 </tr>
517 <tr>
518 <td>AGGGA</td>
519 <td>435</td>
520 <td>2.0769534</td>
521 <td>5.846266</td>
522 <td>1</td>
523 </tr>
524 <tr>
525 <td>CTCAG</td>
526 <td>410</td>
527 <td>2.0570977</td>
528 <td>6.143447</td>
529 <td>24</td>
530 </tr>
531 <tr>
532 <td>CTTCC</td>
533 <td>385</td>
534 <td>2.034384</td>
535 <td>6.4701333</td>
536 <td>17</td>
537 </tr>
538 <tr>
539 <td>AGCAG</td>
540 <td>425</td>
541 <td>2.0246909</td>
542 <td>10.499857</td>
543 <td>15</td>
544 </tr>
545 <tr>
546 <td>AGGAA</td>
547 <td>570</td>
548 <td>2.015381</td>
549 <td>10.390455</td>
550 <td>18</td>
551 </tr>
552 <tr>
553 <td>TCCTC</td>
554 <td>380</td>
555 <td>2.0079634</td>
556 <td>5.1761065</td>
557 <td>1</td>
558 </tr>
559 <tr>
560 <td>TCAGC</td>
561 <td>400</td>
562 <td>2.0069244</td>
563 <td>12.286894</td>
564 <td>44</td>
565 </tr>
566 <tr>
567 <td>AGAGC</td>
568 <td>420</td>
569 <td>2.0008712</td>
570 <td>10.499858</td>
571 <td>5</td>
572 </tr>
573 <tr>
574 <td>TCCTG</td>
575 <td>375</td>
576 <td>1.9859626</td>
577 <td>6.4845653</td>
578 <td>8</td>
579 </tr>
580 <tr>
581 <td>TCTCC</td>
582 <td>375</td>
583 <td>1.9815428</td>
584 <td>5.1761065</td>
585 <td>8</td>
586 </tr>
587 <tr>
588 <td>CACCC</td>
589 <td>310</td>
590 <td>1.9809967</td>
591 <td>6.259694</td>
592 <td>9</td>
593 </tr>
594 <tr>
595 <td>TGTGG</td>
596 <td>370</td>
597 <td>1.9682345</td>
598 <td>5.210821</td>
599 <td>4</td>
600 </tr>
601 <tr>
602 <td>GATGG</td>
603 <td>390</td>
604 <td>1.9654902</td>
605 <td>6.1708827</td>
606 <td>1</td>
607 </tr>
608 <tr>
609 <td>TGGCT</td>
610 <td>370</td>
611 <td>1.9638538</td>
612 <td>9.098641</td>
613 <td>45</td>
614 </tr>
615 <tr>
616 <td>TCCCT</td>
617 <td>370</td>
618 <td>1.9551222</td>
619 <td>5.1761065</td>
620 <td>37</td>
621 </tr>
622 <tr>
623 <td>CAGGG</td>
624 <td>300</td>
625 <td>1.9299511</td>
626 <td>6.3016763</td>
627 <td>21</td>
628 </tr>
629 <tr>
630 <td>AAGAG</td>
631 <td>545</td>
632 <td>1.9269869</td>
633 <td>9.524584</td>
634 <td>4</td>
635 </tr>
636 <tr>
637 <td>CAGAA</td>
638 <td>545</td>
639 <td>1.9226985</td>
640 <td>6.0476103</td>
641 <td>6</td>
642 </tr>
643 <tr>
644 <td>CTGAG</td>
645 <td>380</td>
646 <td>1.9108309</td>
647 <td>6.15715</td>
648 <td>11</td>
649 </tr>
650 <tr>
651 <td>TCTCT</td>
652 <td>460</td>
653 <td>1.9041945</td>
654 <td>5.068676</td>
655 <td>8</td>
656 </tr>
657 <tr>
658 <td>GAGGC</td>
659 <td>295</td>
660 <td>1.897785</td>
661 <td>6.301676</td>
662 <td>22</td>
663 </tr>
664 <tr>
665 <td>CCCAC</td>
666 <td>295</td>
667 <td>1.885142</td>
668 <td>6.259694</td>
669 <td>4</td>
670 </tr>
671 <tr>
672 <td>CCTGC</td>
673 <td>275</td>
674 <td>1.8590509</td>
675 <td>9.93301</td>
676 <td>6</td>
677 </tr>
678 <tr>
679 <td>CCTGT</td>
680 <td>350</td>
681 <td>1.8535651</td>
682 <td>6.4845653</td>
683 <td>6</td>
684 </tr>
685 <tr>
686 <td>TTTCC</td>
687 <td>445</td>
688 <td>1.8421009</td>
689 <td>5.0686755</td>
690 <td>14</td>
691 </tr>
692 <tr>
693 <td>TGCCT</td>
694 <td>345</td>
695 <td>1.8270856</td>
696 <td>5.187652</td>
697 <td>12</td>
698 </tr>
699 <tr>
700 <td>CACAC</td>
701 <td>380</td>
702 <td>1.8022629</td>
703 <td>5.8073177</td>
704 <td>17</td>
705 </tr>
706 <tr>
707 <td>CCTCT</td>
708 <td>340</td>
709 <td>1.7965988</td>
710 <td>7.7641597</td>
711 <td>2</td>
712 </tr>
713 <tr>
714 <td>TTCCC</td>
715 <td>340</td>
716 <td>1.7965986</td>
717 <td>6.470133</td>
718 <td>18</td>
719 </tr>
720 <tr>
721 <td>GAAGA</td>
722 <td>500</td>
723 <td>1.767878</td>
724 <td>7.792842</td>
725 <td>26</td>
726 </tr>
727 <tr>
728 <td>CTGGC</td>
729 <td>260</td>
730 <td>1.7615684</td>
731 <td>6.636777</td>
732 <td>8</td>
733 </tr>
734 <tr>
735 <td>TTCAG</td>
736 <td>440</td>
737 <td>1.7294377</td>
738 <td>9.6255</td>
739 <td>12</td>
740 </tr>
741 <tr>
742 <td>CTCTC</td>
743 <td>325</td>
744 <td>1.717337</td>
745 <td>5.1761065</td>
746 <td>3</td>
747 </tr>
748 <tr>
749 <td>GTGGT</td>
750 <td>320</td>
751 <td>1.7022567</td>
752 <td>5.2108207</td>
753 <td>24</td>
754 </tr>
755 <tr>
756 <td>GGGTG</td>
757 <td>250</td>
758 <td>1.7013805</td>
759 <td>8.333022</td>
760 <td>28</td>
761 </tr>
762 <tr>
763 <td>TGCTT</td>
764 <td>410</td>
765 <td>1.7010024</td>
766 <td>5.0799813</td>
767 <td>4</td>
768 </tr>
769 <tr>
770 <td>CTTTG</td>
771 <td>405</td>
772 <td>1.6802584</td>
773 <td>5.0799813</td>
774 <td>2</td>
775 </tr>
776 <tr>
777 <td>AGAAG</td>
778 <td>475</td>
779 <td>1.6794841</td>
780 <td>5.1952276</td>
781 <td>22</td>
782 </tr>
783 <tr>
784 <td>ACTCC</td>
785 <td>330</td>
786 <td>1.6520276</td>
787 <td>6.1297736</td>
788 <td>10</td>
789 </tr>
790 <tr>
791 <td>CTGCT</td>
792 <td>310</td>
793 <td>1.6417291</td>
794 <td>6.4845653</td>
795 <td>3</td>
796 </tr>
797 <tr>
798 <td>GCCCC</td>
799 <td>190</td>
800 <td>1.6395733</td>
801 <td>6.339712</td>
802 <td>37</td>
803 </tr>
804 <tr>
805 <td>AGTGG</td>
806 <td>325</td>
807 <td>1.6379085</td>
808 <td>6.1708827</td>
809 <td>3</td>
810 </tr>
811 <tr>
812 <td>TGGCA</td>
813 <td>325</td>
814 <td>1.6342632</td>
815 <td>6.1571493</td>
816 <td>16</td>
817 </tr>
818 <tr>
819 <td>GGCTC</td>
820 <td>240</td>
821 <td>1.626063</td>
822 <td>6.636776</td>
823 <td>25</td>
824 </tr>
825 <tr>
826 <td>ACACA</td>
827 <td>460</td>
828 <td>1.6192161</td>
829 <td>5.1721287</td>
830 <td>14</td>
831 </tr>
832 <tr>
833 <td>GCTTT</td>
834 <td>390</td>
835 <td>1.6180266</td>
836 <td>5.0799813</td>
837 <td>5</td>
838 </tr>
839 <tr>
840 <td>TTCTG</td>
841 <td>390</td>
842 <td>1.6180266</td>
843 <td>5.0799813</td>
844 <td>3</td>
845 </tr>
846 <tr>
847 <td>TCCTT</td>
848 <td>390</td>
849 <td>1.6144258</td>
850 <td>6.0824113</td>
851 <td>16</td>
852 </tr>
853 <tr>
854 <td>CCCAA</td>
855 <td>335</td>
856 <td>1.588837</td>
857 <td>5.8073177</td>
858 <td>10</td>
859 </tr>
860 <tr>
861 <td>GCACA</td>
862 <td>330</td>
863 <td>1.5686142</td>
864 <td>5.8202715</td>
865 <td>18</td>
866 </tr>
867 <tr>
868 <td>GTTCA</td>
869 <td>395</td>
870 <td>1.5525635</td>
871 <td>7.700401</td>
872 <td>11</td>
873 </tr>
874 <tr>
875 <td>TCTTC</td>
876 <td>375</td>
877 <td>1.5523325</td>
878 <td>5.068676</td>
879 <td>4</td>
880 </tr>
881 <tr>
882 <td>AGGCA</td>
883 <td>325</td>
884 <td>1.5482932</td>
885 <td>5.8332543</td>
886 <td>6</td>
887 </tr>
888 <tr>
889 <td>GGGGA</td>
890 <td>240</td>
891 <td>1.5474048</td>
892 <td>6.3157325</td>
893 <td>7</td>
894 </tr>
895 <tr>
896 <td>CCTTC</td>
897 <td>290</td>
898 <td>1.5323931</td>
899 <td>6.4701333</td>
900 <td>17</td>
901 </tr>
902 <tr>
903 <td>ATGCC</td>
904 <td>305</td>
905 <td>1.5302798</td>
906 <td>12.286893</td>
907 <td>22</td>
908 </tr>
909 <tr>
910 <td>GAAGG</td>
911 <td>320</td>
912 <td>1.5278738</td>
913 <td>5.8462653</td>
914 <td>8</td>
915 </tr>
916 <tr>
917 <td>GGGAT</td>
918 <td>295</td>
919 <td>1.4867171</td>
920 <td>7.40506</td>
921 <td>21</td>
922 </tr>
923 <tr>
924 <td>TGTGC</td>
925 <td>280</td>
926 <td>1.4861598</td>
927 <td>5.199224</td>
928 <td>7</td>
929 </tr>
930 <tr>
931 <td>AACAG</td>
932 <td>420</td>
933 <td>1.4817125</td>
934 <td>5.1836653</td>
935 <td>10</td>
936 </tr>
937 <tr>
938 <td>TCTTT</td>
939 <td>455</td>
940 <td>1.4755235</td>
941 <td>5.5590916</td>
942 <td>1</td>
943 </tr>
944 <tr>
945 <td>TTGGC</td>
946 <td>275</td>
947 <td>1.4596211</td>
948 <td>5.199223</td>
949 <td>15</td>
950 </tr>
951 <tr>
952 <td>GAGAT</td>
953 <td>385</td>
954 <td>1.4368514</td>
955 <td>6.397646</td>
956 <td>27</td>
957 </tr>
958 <tr>
959 <td>TTTGG</td>
960 <td>345</td>
961 <td>1.4345239</td>
962 <td>6.1095753</td>
963 <td>3</td>
964 </tr>
965 <tr>
966 <td>GGTTC</td>
967 <td>270</td>
968 <td>1.4330826</td>
969 <td>10.398446</td>
970 <td>10</td>
971 </tr>
972 <tr>
973 <td>CCTTG</td>
974 <td>265</td>
975 <td>1.4034137</td>
976 <td>5.187652</td>
977 <td>18</td>
978 </tr>
979 <tr>
980 <td>CCCTT</td>
981 <td>265</td>
982 <td>1.4002901</td>
983 <td>5.176106</td>
984 <td>14</td>
985 </tr>
986 <tr>
987 <td>CTGTT</td>
988 <td>335</td>
989 <td>1.3898433</td>
990 <td>5.0799813</td>
991 <td>10</td>
992 </tr>
993 <tr>
994 <td>CCTTT</td>
995 <td>335</td>
996 <td>1.3867503</td>
997 <td>5.068676</td>
998 <td>8</td>
999 </tr>
1000 <tr>
1001 <td>GGCAC</td>
1002 <td>215</td>
1003 <td>1.3800533</td>
1004 <td>6.2876506</td>
1005 <td>17</td>
1006 </tr>
1007 <tr>
1008 <td>TTGAA</td>
1009 <td>465</td>
1010 <td>1.3564935</td>
1011 <td>6.4295163</td>
1012 <td>7</td>
1013 </tr>
1014 <tr>
1015 <td>CTTGG</td>
1016 <td>255</td>
1017 <td>1.3534669</td>
1018 <td>5.1992235</td>
1019 <td>18</td>
1020 </tr>
1021 <tr>
1022 <td>GTGTT</td>
1023 <td>325</td>
1024 <td>1.3513632</td>
1025 <td>5.091313</td>
1026 <td>28</td>
1027 </tr>
1028 <tr>
1029 <td>GGCCC</td>
1030 <td>155</td>
1031 <td>1.3405302</td>
1032 <td>6.353853</td>
1033 <td>2</td>
1034 </tr>
1035 <tr>
1036 <td>TGGTT</td>
1037 <td>320</td>
1038 <td>1.330573</td>
1039 <td>5.091313</td>
1040 <td>25</td>
1041 </tr>
1042 <tr>
1043 <td>TTCTT</td>
1044 <td>410</td>
1045 <td>1.3295923</td>
1046 <td>7.941558</td>
1047 <td>4</td>
1048 </tr>
1049 <tr>
1050 <td>GGGGT</td>
1051 <td>195</td>
1052 <td>1.327077</td>
1053 <td>8.333022</td>
1054 <td>45</td>
1055 </tr>
1056 <tr>
1057 <td>AAGGA</td>
1058 <td>375</td>
1059 <td>1.3259085</td>
1060 <td>5.1952276</td>
1061 <td>44</td>
1062 </tr>
1063 <tr>
1064 <td>CAGAT</td>
1065 <td>350</td>
1066 <td>1.3033215</td>
1067 <td>5.471493</td>
1068 <td>10</td>
1069 </tr>
1070 <tr>
1071 <td>CTGGT</td>
1072 <td>245</td>
1073 <td>1.3003898</td>
1074 <td>5.1992235</td>
1075 <td>12</td>
1076 </tr>
1077 <tr>
1078 <td>TGTCC</td>
1079 <td>245</td>
1080 <td>1.2974956</td>
1081 <td>5.187652</td>
1082 <td>21</td>
1083 </tr>
1084 <tr>
1085 <td>GCTCC</td>
1086 <td>190</td>
1087 <td>1.2844352</td>
1088 <td>8.277508</td>
1089 <td>26</td>
1090 </tr>
1091 <tr>
1092 <td>GACAG</td>
1093 <td>265</td>
1094 <td>1.2624544</td>
1095 <td>5.833254</td>
1096 <td>27</td>
1097 </tr>
1098 <tr>
1099 <td>GAGCG</td>
1100 <td>195</td>
1101 <td>1.2544682</td>
1102 <td>12.603353</td>
1103 <td>6</td>
1104 </tr>
1105 <tr>
1106 <td>TTGGG</td>
1107 <td>235</td>
1108 <td>1.2500948</td>
1109 <td>6.5135255</td>
1110 <td>6</td>
1111 </tr>
1112 <tr>
1113 <td>AATGC</td>
1114 <td>335</td>
1115 <td>1.2474647</td>
1116 <td>10.031068</td>
1117 <td>21</td>
1118 </tr>
1119 <tr>
1120 <td>GGCTT</td>
1121 <td>235</td>
1122 <td>1.2473125</td>
1123 <td>5.199223</td>
1124 <td>4</td>
1125 </tr>
1126 <tr>
1127 <td>TTTGC</td>
1128 <td>295</td>
1129 <td>1.223892</td>
1130 <td>5.0799813</td>
1131 <td>9</td>
1132 </tr>
1133 <tr>
1134 <td>GGTGT</td>
1135 <td>230</td>
1136 <td>1.223497</td>
1137 <td>5.21082</td>
1138 <td>27</td>
1139 </tr>
1140 <tr>
1141 <td>GATCG</td>
1142 <td>235</td>
1143 <td>1.181698</td>
1144 <td>6.1571493</td>
1145 <td>45</td>
1146 </tr>
1147 <tr>
1148 <td>AGCTC</td>
1149 <td>225</td>
1150 <td>1.1288949</td>
1151 <td>6.1434464</td>
1152 <td>25</td>
1153 </tr>
1154 <tr>
1155 <td>ACCCT</td>
1156 <td>225</td>
1157 <td>1.1263824</td>
1158 <td>6.129773</td>
1159 <td>10</td>
1160 </tr>
1161 <tr>
1162 <td>CGGAA</td>
1163 <td>235</td>
1164 <td>1.119535</td>
1165 <td>9.333206</td>
1166 <td>1</td>
1167 </tr>
1168 <tr>
1169 <td>CCCAT</td>
1170 <td>220</td>
1171 <td>1.1013516</td>
1172 <td>6.129773</td>
1173 <td>21</td>
1174 </tr>
1175 <tr>
1176 <td>TCTTG</td>
1177 <td>265</td>
1178 <td>1.0994283</td>
1179 <td>5.0799813</td>
1180 <td>21</td>
1181 </tr>
1182 <tr>
1183 <td>ATGCA</td>
1184 <td>295</td>
1185 <td>1.0985136</td>
1186 <td>5.4714913</td>
1187 <td>37</td>
1188 </tr>
1189 <tr>
1190 <td>GCTTG</td>
1191 <td>205</td>
1192 <td>1.0880812</td>
1193 <td>5.199223</td>
1194 <td>2</td>
1195 </tr>
1196 <tr>
1197 <td>AGCGG</td>
1198 <td>165</td>
1199 <td>1.061473</td>
1200 <td>12.603352</td>
1201 <td>7</td>
1202 </tr>
1203 <tr>
1204 <td>AACCA</td>
1205 <td>300</td>
1206 <td>1.0560105</td>
1207 <td>5.1721287</td>
1208 <td>22</td>
1209 </tr>
1210 <tr>
1211 <td>AACCT</td>
1212 <td>280</td>
1213 <td>1.0403365</td>
1214 <td>5.4593143</td>
1215 <td>13</td>
1216 </tr>
1217 <tr>
1218 <td>CCGAG</td>
1219 <td>160</td>
1220 <td>1.0270164</td>
1221 <td>12.575301</td>
1222 <td>25</td>
1223 </tr>
1224 <tr>
1225 <td>TTGCC</td>
1226 <td>190</td>
1227 <td>1.0062209</td>
1228 <td>5.1876516</td>
1229 <td>3</td>
1230 </tr>
1231 <tr>
1232 <td>ACTCA</td>
1233 <td>265</td>
1234 <td>0.9846043</td>
1235 <td>5.4593153</td>
1236 <td>11</td>
1237 </tr>
1238 <tr>
1239 <td>CTCAT</td>
1240 <td>250</td>
1241 <td>0.98044825</td>
1242 <td>5.7624474</td>
1243 <td>4</td>
1244 </tr>
1245 <tr>
1246 <td>GTTCC</td>
1247 <td>185</td>
1248 <td>0.9797416</td>
1249 <td>6.4845653</td>
1250 <td>27</td>
1251 </tr>
1252 <tr>
1253 <td>GAACC</td>
1254 <td>205</td>
1255 <td>0.97444224</td>
1256 <td>5.820272</td>
1257 <td>25</td>
1258 </tr>
1259 <tr>
1260 <td>GGCGG</td>
1261 <td>110</td>
1262 <td>0.9555928</td>
1263 <td>10.637051</td>
1264 <td>44</td>
1265 </tr>
1266 <tr>
1267 <td>GCGGT</td>
1268 <td>130</td>
1269 <td>0.8827489</td>
1270 <td>13.303162</td>
1271 <td>8</td>
1272 </tr>
1273 <tr>
1274 <td>GCGGG</td>
1275 <td>100</td>
1276 <td>0.86872077</td>
1277 <td>6.3822303</td>
1278 <td>45</td>
1279 </tr>
1280 <tr>
1281 <td>TGCCG</td>
1282 <td>125</td>
1283 <td>0.846908</td>
1284 <td>14.93275</td>
1285 <td>23</td>
1286 </tr>
1287 <tr>
1288 <td>AGGCG</td>
1289 <td>120</td>
1290 <td>0.7719804</td>
1291 <td>6.3016763</td>
1292 <td>15</td>
1293 </tr>
1294 <tr>
1295 <td>CGGTT</td>
1296 <td>140</td>
1297 <td>0.74307984</td>
1298 <td>10.398446</td>
1299 <td>9</td>
1300 </tr>
1301 <tr>
1302 <td>GCCGA</td>
1303 <td>115</td>
1304 <td>0.738168</td>
1305 <td>12.575301</td>
1306 <td>24</td>
1307 </tr>
1308 <tr>
1309 <td>CGAGA</td>
1310 <td>130</td>
1311 <td>0.61931723</td>
1312 <td>9.333206</td>
1313 <td>26</td>
1314 </tr>
1315 <tr>
1316 <td>CGGGA</td>
1317 <td>85</td>
1318 <td>0.5468194</td>
1319 <td>6.301676</td>
1320 <td>24</td>
1321 </tr>
1322 <tr>
1323 <td>CACGG</td>
1324 <td>85</td>
1325 <td>0.54560244</td>
1326 <td>6.2876506</td>
1327 <td>37</td>
1328 </tr>
1329 </table>
1330 <p><a href="#summary">Back to summary</a></div>
1331 </div><div class="footer">Produced by <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC</a> (version 0.9.1)</div>
1332 <table>
1333 <tr><td><a href="dataset_100.dat_fastqc.zip">dataset_100.dat_fastqc.zip (294.3 KB)</a></td></tr>
1334 <tr><td><a href="duplication_levels.png">duplication_levels.png (14.4 KB)</a></td></tr>
1335 <tr><td><a href="fastqc_data.txt">fastqc_data.txt (11.6 KB)</a></td></tr>
1336 <tr><td><a href="fastqc_report.html">fastqc_report.html (19.8 KB)</a></td></tr>
1337 <tr><td><a href="kmer_profiles.png">kmer_profiles.png (172.2 KB)</a></td></tr>
1338 <tr><td><a href="per_base_gc_content.png">per_base_gc_content.png (12.0 KB)</a></td></tr>
1339 <tr><td><a href="per_base_n_content.png">per_base_n_content.png (7.4 KB)</a></td></tr>
1340 <tr><td><a href="per_base_quality.png">per_base_quality.png (9.4 KB)</a></td></tr>
1341 <tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png (23.8 KB)</a></td></tr>
1342 <tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png (29.4 KB)</a></td></tr>
1343 <tr><td><a href="per_sequence_quality.png">per_sequence_quality.png (21.7 KB)</a></td></tr>
1344 <tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png (18.8 KB)</a></td></tr>
1345 <tr><td><a href="summary.txt">summary.txt (487 B)</a></td></tr>
1346 </table><p/>
1347 <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>
1348 FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing
1349 </body></html>