Mercurial > repos > fubar > fastqc_0_10_1_installer

changeset 0:ed44ac4238c9 draft

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Uploaded
author fubar
date Thu, 06 Jun 2013 00:24:24 -0400
parents
children c7b3552c05d9
files dependencies/fastqc_dist_0.10.1/tool_dependencies.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dependencies/fastqc_dist_0.10.1/tool_dependencies.xml	Thu Jun 06 00:24:24 2013 -0400
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="fastqc_dist_0_10_1" version="0.10.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>../FastQC</source_directory>
+                    <destination_directory>$INSTALL_DIR/fastqc_dist</destination_directory>
+                </action>                
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist/fastqc</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>