# HG changeset patch
# User fubar
# Date 1371024073 14400
# Node ID 8d34828733aaf8155679f6e4c68259fd25b84b23
# Parent  7ef84c58999ac41660e8c1d80ec0b0d913c910dc
Uploaded

diff -r 7ef84c58999a -r 8d34828733aa rgedgeR/rgedgeRpaired.xml~
--- a/rgedgeR/rgedgeRpaired.xml~	Wed Jun 12 03:59:58 2013 -0400
+++ b/rgedgeR/rgedgeRpaired.xml~	Wed Jun 12 04:01:13 2013 -0400
@@ -2,8 +2,8 @@
   <description>1 or 2 level models for count data</description>
   <requirements>
       <requirement type="package" version="6.2">name=readline</requirement>
-      <requirement type="package" version="3.0.1">name=R</requirement>
-      <requirement type="package" version="2.12">name=BioCBasics</requirement>
+      <requirement type="package" version="3.0.1">name=package_R</requirement>
+      <requirement type="package" version="2.12">name=package_BioCBasics</requirement>
   </requirements>
   
   <command interpreter="python">
diff -r 7ef84c58999a -r 8d34828733aa rgedgeR/tool_dependencies.xml
--- a/rgedgeR/tool_dependencies.xml	Wed Jun 12 03:59:58 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml	Wed Jun 12 04:01:13 2013 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="package_readline_6_2" version="6.2">
+    <package name="readline" version="6.2">
         <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
     <package name="package_R" version="3.0.1">
diff -r 7ef84c58999a -r 8d34828733aa rgedgeR/tool_dependencies.xml~
--- a/rgedgeR/tool_dependencies.xml~	Wed Jun 12 03:59:58 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml~	Wed Jun 12 04:01:13 2013 -0400
@@ -9,8 +9,9 @@
             <actions>
                 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="readline" version="6.2" />
+                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" 
+                            toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                        <package name="package_readline_6_2" version="6.2" />
                     </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>