# HG changeset patch
# User fubar
# Date 1371079649 14400
# Node ID 5526071146552deaed4c8e2b0cccb9f1bf8a0056
# Parent  52203bebe22a0fa6477d4f7a7de0038efa326a8d
Uploaded

diff -r 52203bebe22a -r 552607114655 rgedgeR/rgedgeRpaired.xml
--- a/rgedgeR/rgedgeRpaired.xml	Wed Jun 12 09:33:33 2013 -0400
+++ b/rgedgeR/rgedgeRpaired.xml	Wed Jun 12 19:27:29 2013 -0400
@@ -1,8 +1,8 @@
 <tool id="rgedgeRpaired" name="edgeR" version="0.18">
   <description>1 or 2 level models for count data</description>
   <requirements>
-      <requirement type="package" version="3.0.1">package_r3</requirement>
-      <requirement type="package" version="2.12">package_biocbasics</requirement>
+      <requirement type="package" version="3.0.1">r3</requirement>
+      <requirement type="package" version="2.12">biocbasics</requirement>
   </requirements>
   
   <command interpreter="python">
diff -r 52203bebe22a -r 552607114655 rgedgeR/tool_dependencies.xml
--- a/rgedgeR/tool_dependencies.xml	Wed Jun 12 09:33:33 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml	Wed Jun 12 19:27:29 2013 -0400
@@ -1,13 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="package_r3" version="3.0.1">
+    <package name="r3" version="3.0.1">
         <repository changeset_revision="8dcdf371a760" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
-    <package name="package_biocbasics" version="2.12">
+    <package name="biocbasics" version="2.12">
         <install version="1.0"> 
             <actions>
                 <action type="set_environment_for_install">
-                      <package name="package_r3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1">
+                      <package name="r3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1">
                             <repository name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
                         </package>