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view rgedgeR/tool_dependencies.xml @ 37:faf413433dca draft

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author fubar
date Thu, 13 Jun 2013 00:34:29 -0400
parents 46c91da1351e
children ba361e7ebc17
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<?xml version="1.0"?>
<tool_dependency>
    <package name="package_r3" version="3.0.1">
        <repository changeset_revision="6344ee60d0cf" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
    </package>
    <package name="biocbasics" version="2.12">
        <install version="1.0"> 
            <actions>
                <action type="set_environment_for_install">
                    <repository changeset_revision="6344ee60d0cf" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                        <package name="r3" version="3.0.1" />
                    </repository>
                </action>
                <action type="shell_command">R CMD BATCH ${REPOSITORY_INSTALL_DIR}/rgedgeR/installBioC.R </action>
            </actions>
        </install>
        <readme>Installs some basic bioc packages for the edgeR tool
       </readme>
    </package>
</tool_dependency>