Mercurial > repos > fubar > edger_test
view rgedgeR/test-data/edgeRtest1out.xls @ 51:773b5051159e draft
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| author | fubar |
|---|---|
| date | Fri, 26 Jul 2013 22:49:53 -0400 |
| parents | 82e0af566160 |
| children |
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Name logFC logCPM LR PValue adj.p.value Dispersion totreads case_X11706He_AGTTCC_L001_R1_001_trimmed.fastq_bwa.sam.bam case_X11699He_GGCTAC_L001_R1_001_trimmed.fastq_bwa.sam.bam case_X11698He_TAGCTT_L001_R1_001_trimmed.fastq_bwa.sam.bam case_X11700He_CTTGTA_L001_R1_001_trimmed.fastq_bwa.sam.bam control_X11706Liv_CAAAAG_L003_R1_001_trimmed.fastq_bwa.sam.bam control_X11700Liv_ATTCCT_L003_R1_001_trimmed.fastq_bwa.sam.bam control_X11698Liv_ACTGAT_L003_R1_001_trimmed.fastq_bwa.sam.bam control_X11699Liv_ATGAGC_L003_R1_001_trimmed.fastq_bwa.sam.bam case_X11706He_AGTTCC_L001_R1_001_trimmed.fastq_bwa.sam.bam case_X11699He_GGCTAC_L001_R1_001_trimmed.fastq_bwa.sam.bam case_X11698He_TAGCTT_L001_R1_001_trimmed.fastq_bwa.sam.bam case_X11700He_CTTGTA_L001_R1_001_trimmed.fastq_bwa.sam.bam control_X11706Liv_CAAAAG_L003_R1_001_trimmed.fastq_bwa.sam.bam control_X11700Liv_ATTCCT_L003_R1_001_trimmed.fastq_bwa.sam.bam control_X11698Liv_ACTGAT_L003_R1_001_trimmed.fastq_bwa.sam.bam control_X11699Liv_ATGAGC_L003_R1_001_trimmed.fastq_bwa.sam.bam Mir122a -10.6613482198735 12.5379487184339 445.912028851371 5.59474310450852e-99 6.38360188224422e-96 0.102055096028295 90428 6.64466912039531 2.86464823551992 20.1236936368881 4.75652253016081 20841.6623198401 16818.9531619257 7242.55663282834 8468.31297344994 12 7 27 8 29767 24233 11911 24463 Mir192 -7.10901851688288 17.2474145508888 366.131659138235 1.3015583263717e-81 7.42539025195057e-79 0.0776548700185199 2325567 1779.66387941254 1294.41176699279 4493.54625691845 1933.52640851037 463599.032378899 340312.253828562 383591.60517699 182292.180510107 3214 3163 6029 3252 662133 490327 630849 526600 Mir208b 13.4237202575152 9.82233816515324 355.417815392181 2.80129611458365e-79 1.06542628891331e-76 0.124440587141633 14756 1245.90702213628 570.139045385768 4930.34448733332 881.902421077918 0.74532198655141 0 0 0 2049 1647 8904 2155 1 0 0 0 Mir208a 11.9775863683342 8.38828977985358 348.815401742963 7.675450754893e-78 2.18942232783323e-75 0.0993679816515115 4638 433.789589950159 712.527819143148 1006.59908044528 649.748467524829 0 0 0 0.553722426699609 1060 956 1693 928 0 0 0 1 Mir499 14.4882160574998 8.61277040381698 291.127944921827 2.82350748745294e-65 6.4432440863676e-63 0.134816198797062 6527 608.439028317971 506.657690265579 2521.60879492395 270.357373677161 0 0 0 0 869 730 4147 781 0 0 0 0 Mir149 6.86973108218652 8.78566474384905 253.019861795716 5.70293016120625e-57 1.08450721898939e-54 0.0983468375157501 6164 774.657674952754 459.571424069838 1710.51395913549 766.394692672161 17.5039996639232 6.24646467450714 4.86444908593961 5.5386913941544 1399 1123 2295 1289 25 9 8 16 Mir490 8.4539298899245 6.90959613094456 251.056095815646 1.52828085290668e-56 2.4910977902379e-54 0.0974500488770791 1741 209.881556643346 217.749755819205 520.538722875595 195.794075709069 1.03850463640395 0.553722426699609 0 0.74532198655141 353 311 750 322 3 1 0 1 Mir802 -12.4996776940066 6.62939088571757 237.561606597444 1.33781241656995e-53 1.90805495913289e-51 0.10939980863872 1514 0 0 0 0 305.654779538184 164.10342034907 155.772295189245 209.286991327076 0 0 0 0 552 401 209 352 Mir204 7.37117920479641 7.55899555710097 237.12302218121 1.66736458270285e-53 2.11384776540439e-51 0.10292005004102 2601 425.578854320855 326.416358632286 646.247667592045 375.481932100929 3.04028067871226 0.6923364242693 0.553722426699609 3.68311915995418 571 549 923 541 5 2 1 9 Mir1948 -7.58332571104735 7.29345576009458 204.796406017043 1.87589722530299e-46 2.14039873407072e-44 0.118339985035871 2404 1.2161122714849 0.6923364242693 1.66116728009883 1.63694184886853 647.684806313175 385.278324943026 181.341436518244 428.229856018989 2 2 3 4 869 648 259 617 Mir3073 -11.7485555893732 5.88146234349958 200.033500954155 2.05362547312175e-45 2.13016969530174e-43 0.110685621278186 904 0 0 0 0 207.347142288176 75.4646702453536 72.5376378976488 87.5763889144661 0 0 0 0 341 218 131 214 Mir194-2 -5.43982669183809 7.86004832737241 165.572392495399 6.85919857312405e-38 6.52195464327879e-36 0.106710199302315 3570 10.5207261072926 6.13853193325697 14.9064397310282 9.51304506032163 921.410542308918 600.354660383186 266.936643590936 304.628026678492 19 15 20 16 1316 865 439 880 Mir10b 5.0328982107069 13.880769769219 160.065802570007 1.0946399286548e-36 9.60757045073175e-35 0.107954343937396 197340 25838.8226297643 32163.6053489474 36317.2985027079 34465.2158674084 1825.38451949884 373.861669105422 658.375965345836 727.211416359842 34668 54096 51870 49658 3002 1080 1189 1777 Mir101b -3.92528713393055 11.9360901455378 120.624266541894 4.61814317471517e-28 3.76378668739286e-26 0.0966307527814339 59019 219.816814705503 301.225000124588 811.923157038789 427.069498293958 10145.0679915167 7747.97041123897 11280.4211505294 6628.41993572847 635 544 1984 573 17063 11066 16253 10901 Mir182 -5.24438373094747 8.94270765623571 118.928149724545 1.08592583416118e-27 8.26027584518606e-26 0.149934428671101 7189 16.9622423945978 14.3967830941898 22.0987149597251 31.3035234351592 984.005598427018 615.44062818354 2366.0220083772 653.660345923136 49 26 54 42 1655 879 3409 1075 Mir200b -6.72534784619757 5.76518685294719 115.731891447532 5.44098879544178e-27 3.88010513474942e-25 0.167124904530932 888 2.43222454296981 0 1.66116728009883 0 369.679705329499 97.5087118682966 46.2105591127573 107.578002727623 4 0 3 0 496 164 66 155 Mir181c 3.6118671281253 10.5698150360209 107.820107113202 2.94315295097335e-25 1.97537501003564e-23 0.0938527006387662 23605 2420.85208718677 1892.87875056625 4093.0929402801 1902.59025813986 232.036507077113 272.787847077816 228.313081447719 298.968314259808 3488 3113 11824 3436 567 366 384 427 Mir181d 3.48997562250607 7.2320639569436 102.186614268585 5.05301947727886e-24 3.20305290198621e-22 0.087384984044046 2139 310.053946405387 202.152207531835 539.823349635392 295.665994593338 36.4833681445471 14.5390649096553 25.471231628182 15.550947564251 416 340 771 426 60 42 46 38 Mir21 -3.07777147203033 13.8815003666918 91.3732407445455 1.1897452302054e-21 7.14473319823348e-20 0.0849427206355669 229120 3207.21258454416 2190.82625708005 4348.9112490476 2010.56613134628 27154.0006244933 33227.944804435 25707.2205795704 35379.0841207216 4621 3603 12563 3631 66353 44582 43237 50530 Mir199b 5.41147631803522 4.69586911909022 86.7037178851385 1.26059609329233e-20 7.19170071223273e-19 0.156561826531982 370 43.4032680877174 44.8102391396434 99.2493831616134 49.2525469951386 1.3846728485386 0.553722426699609 0 2.98128794620564 73 64 143 81 4 1 0 4 Mir193 -5.36015662788668 4.77547692611212 84.6612650026128 3.5412053458764e-20 1.92405490459285e-18 0.155464968416992 421 1.49064397310282 1.1891306325402 2.80063994622771 0.694051630500793 101.545374668989 34.9629894255996 33.7770680286762 33.9665433640219 2 2 4 1 167 101 61 83 Mir23a 3.00307076424737 9.46741956688047 82.28684490401 1.17702908493873e-19 6.10450084506861e-18 0.0892034490333833 10118 1149.88932166638 1127.95773834321 2471.51785621332 1096.32521274364 150.583172278573 126.802435714211 89.2133307633346 243.720289602311 1934 1611 3561 1803 435 229 218 327 Mir195 3.06054621394571 8.15279745103936 81.3972715690713 1.84612638492429e-19 9.15839219651573e-18 0.0913301572784805 3962 429.134880692197 283.190939854255 922.708619350646 470.89573048592 110.625277875995 77.7337826160888 45.6042101806839 41.540185456158 775 692 1238 792 158 112 75 120 Ahsg -10.1013431702234 6.6385887851201 79.821328032349 4.09844702296257e-19 1.92375926690416e-17 0.42092199405061 1524 0 0.553722426699609 0 0 348.415275334279 12.6028797580247 610.071383210197 24.3222454296981 0 1 0 0 586 18 879 40 Mir148a -2.78937502090353 16.047168680842 79.7658888859378 4.21507288979878e-19 1.92375926690416e-17 0.0819605364404836 1002397 15925.5982512306 8528.20007414923 22070.8222058197 10590.1952912549 192723.868638491 105445.564275186 179549.727112645 134274.698694836 26191 24636 39859 25878 258578 177349 256441 193465 Dnm3os 3.18944316253823 6.61883431628908 79.1961422287326 5.62397892398994e-19 2.46806152010482e-17 0.0949653148790185 1401 134.000827261305 87.167153452249 365.207773410191 182.531552094921 37.1084792875172 24.9858586980285 12.161122714849 13.846728485386 242 213 490 307 53 36 20 40 Mir27a 2.92177170736328 10.5812768795259 77.2698776994316 1.49123094631961e-18 6.30183151759511e-17 0.0912505912483571 21886 2383.61235292684 2512.17403176626 5321.98790268008 2361.69003122368 328.513633315783 347.737683967355 163.694184886853 566.444709779072 4009 3588 7668 3884 949 628 400 760 Mir429 -5.34193377949947 4.95110312707712 76.3875799779135 2.33112791050646e-18 9.49934623531384e-17 0.183241171201345 499 1.7836959488103 0.700159986556928 2.08215489150238 1.82416840722736 91.7345762156822 45.405238989368 16.7786539509024 75.2775206416924 3 1 3 3 265 82 41 101 Mir214 3.12590636489108 6.20234665031187 74.2821251599606 6.77138706168541e-18 2.66419056461485e-16 0.0953276171520653 1048 110.058160569384 56.4254185779479 198.23262875846 93.7149208477231 33.5394893948135 15.4586982230226 11.9027197714678 20.127497284523 181 163 358 229 45 26 17 29 Mir200a -7.59226302352062 4.05994320136271 73.7142550533581 9.02845045111825e-18 3.43382065490864e-16 0.224178202729185 264 0 0 0.594565316270102 0 90.2267119651031 32.2269751943499 11.4235510004434 26.0249540548816 0 0 1 0 130 53 33 47 Mir194-1 -3.97021853073367 5.39389876933198 73.2237979529499 1.1575165879669e-17 4.26040782861365e-16 0.130958864780352 635 3.56739189762061 9.10207982524007 5.55241304400634 3.64833681445471 76.1570066696229 88.5955882719375 33.1480724395876 105.090400103749 6 13 8 6 220 160 81 141 Mir378 2.95431952960146 8.05336780578876 73.0964650986627 1.23465451887634e-17 4.40231501886846e-16 0.0956665499194766 4075 425.697271826612 392.139171232948 1155.9147140464 188.315507401249 76.4136948845461 36.8311915995418 91.6746043458234 63.0239235246308 608 565 1901 544 138 90 123 106 Mir322 3.05856921521976 8.94824187288921 72.8372126855238 1.40796901194656e-17 4.86815952312432e-16 0.103656954331831 7074 1012.89257972337 671.858807385215 1784.70780573361 855.071608776977 158.70265142878 78.9263523667001 50.3887408296645 91.6687435366374 1359 1130 2549 1232 261 228 91 224 Mir215 2.90893351586836 6.38192368892387 70.311049912704 5.06531683728474e-17 1.69986073862997e-15 0.0900203619873792 1182 123.075020467911 161.036796908093 272.762290786812 122.219283284233 19.3854198795404 17.1653952276879 11.4585929420797 26.8315915158508 207 230 393 201 56 31 28 36 Cyp3a25 -9.77860211373653 3.91325729596345 70.0264241191466 5.85153294977192e-17 1.90759974162565e-15 0.264452365698728 226 0 0 0 0 56.6444709779072 17.836959488103 65.1148787497943 18.7393940235214 0 0 0 0 76 30 93 27 Mir183 -4.21446206828232 5.24792871814947 66.3110130402762 3.85100994568175e-16 1.22055620778413e-14 0.159551640795599 563 8.40191983868314 1.38810326100159 2.43222454296981 2.42317748494255 86.3806985651391 29.0557178174163 134.903279565805 77.2934911151132 12 2 4 7 156 71 181 130 Mir181a-2 2.83771284942958 7.57379761415609 65.529002601634 5.72650030707276e-16 1.76592887847838e-14 0.0983402987214175 2817 288.826664477665 137.774948429591 639.549402838049 182.109780686623 58.13511495101 41.025006822637 80.5183984540467 56.912233701065 475 398 1155 445 78 69 115 82 Mir155 3.73430977551283 4.97536414314019 65.0759982171349 7.20644948975499e-16 2.16383128100275e-14 0.13295454756028 463 33.9665433640219 58.8804369375614 114.156540723859 52.5119989917696 9.7167228270111 1.82416840722736 2.7693456970772 4.98350184029649 83 79 192 75 14 3 8 9 Snord91a -2.81834162418986 6.5922507494912 64.2934517703521 1.07201440082266e-15 3.13632931112474e-14 0.0942244574316978 1437 13.846728485386 16.0579503742887 33.1480724395876 18.6330496637853 215.827209806047 179.240956558574 248.470483719284 173.295998686599 40 29 81 25 363 256 358 285 Mir125b-2 2.85223280857829 8.08109324518757 64.2082166292202 1.11940933259702e-15 3.19311512123301e-14 0.10276577547371 3837 315.520541369408 440.485294051883 763.42186609081 485.210870683951 108.272054358124 90.6003642256253 20.770092728079 73.6450827510481 771 591 1284 693 156 149 60 133 Serpina4-ps1 -10.0905640887531 4.22405077630453 64.0209367290974 1.23103990147691e-15 3.4258939697199e-14 0.344064523917905 295 0 0 0 0 108.071688049954 11.2967410091319 81.9187184271606 9.7167228270111 0 0 0 0 145 19 117 14 Mir133b 9.29339239795832 3.40470370765963 63.5957583468182 1.52757738622221e-15 4.14991856590367e-14 0.264043920283644 159 17.7191176543875 10.6401220176454 57.3897929644586 14.2695675904824 0 0 0 0 32 26 77 24 0 0 0 0 Gm10069 -7.47545882888183 6.40032633575856 63.1544509261085 1.91117152002377e-15 5.07127140545842e-14 0.415414318390197 1309 1.1891306325402 1.40031997311386 0.694051630500793 0.608056135742452 191.431021310461 6.64466912039531 286.874059014209 27.5769135024022 2 2 1 1 553 12 701 37 Mir871 -5.63358768833506 4.28323305801825 62.6751301452424 2.43774553659211e-15 6.32151740284455e-14 0.219078255638986 290 1.22770638665139 0.74532198655141 0.594565316270102 0 56.912233701065 49.2525469951386 10.0388781519048 51.4961856830637 3 1 1 0 82 81 29 93 Mir184 5.00296778701477 4.12369123421566 61.9764243428226 3.47594000287726e-15 8.81343898507322e-14 0.192899916391374 247 33.4430874658348 14.1928966975206 49.8350184029648 21.689479497508 2.98128794620564 0 1.40031997311386 1.38810326100159 55 41 90 53 4 0 2 2 Mir132 2.70286257459272 5.86613412494138 58.8077259440204 1.73857260625722e-14 4.31241596465105e-13 0.0914847775829246 857 82.6956344609734 43.2710265168312 182.174678384172 60.9760838703526 28.3222354889536 13.0804369579422 21.0047995967078 19.4334456540222 136 125 329 149 38 22 30 28 Snord104 -2.49206335283133 11.1088708495205 58.5554702704374 1.97639393929677e-14 4.79801166965451e-13 0.0909302298475509 33458 614.929744623703 437.800417734565 862.997352851682 514.408134403937 3826.7608071924 4181.25634455341 4430.7007368448 4212.86263911304 886 720 2493 929 9351 5610 7452 6017 Mir3074-2 2.63550543538719 7.87104175254715 57.7293756038868 3.00777254045821e-14 7.14972597638087e-13 0.0990019802043333 3470 450.903031342662 320.651853291366 835.469130510129 171.699433218786 89.7030331253367 51.9729037015757 48.4459291258417 83.2391442778142 644 462 1374 496 162 127 65 140 Mir24-2 2.63550528434932 7.87104239659286 57.6817352688704 3.08150938383032e-14 7.17551470806204e-13 0.0990865634413493 3470 479.987359339108 274.689176116787 962.019821529219 344.249608728393 98.5050939902772 43.9633629411005 35.9919577354746 57.2929647103984 644 462 1374 496 162 127 65 140 5430416N02Rik -3.26722803579243 5.20236682797924 56.75137289148 4.94545490626554e-14 1.1285528096098e-12 0.12456686880483 564 6.08056135742452 1.73084106067325 12.735615814091 4.91082554660558 145.337787377525 58.8619663107401 55.3126389379973 97.8612799006118 10 5 23 12 195 99 79 141 Mir150 2.73410607286415 8.2502498796262 56.2976392353433 6.22901702317529e-14 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227 505 C430049B03Rik 1.71016972066493 10.8223091327111 26.8082784375072 2.24672814113162e-07 2.46492000868383e-06 0.0988498324160551 25716 1536.29452545358 2029.94641628077 2948.95074073665 2969.36279442082 1186.75237127512 1158.06461776516 571.898543532653 1184.4933524263 4438 3666 7206 3984 1996 1654 824 1948 Taf1d -1.76454724951041 6.55908754578095 26.4166122241945 2.75163761899181e-07 2.99011287930443e-06 0.0995348557652302 1421 31.5119617623154 39.208959247188 108.272054358124 32.8350313300924 123.58205173207 96.3477022457321 139.549292616042 171.424056906824 53 56 156 54 357 174 341 230 Mir144 2.42421663401894 10.1128061755165 26.3134903354097 2.90254150898289e-07 3.12433949221649e-06 0.192587788459561 13709 2856.81917445155 1437.06436942484 735.167985884775 2622.127060032 439.624586141793 162.006723279016 184.38956809097 453.023656674364 3833 2417 1050 3778 723 468 333 1107 Mir3074-1 2.96242426446157 3.71009425877681 26.2448795961817 3.00751187649521e-07 3.20707574867386e-06 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0 Fam120b -4.06722935857354 1.33896267249282 12.993737822039 0.000312534451854438 0.00178141426360264 0.564043065984899 39 0 0 1.10744485339922 0 11.9251517848226 2.37826126508041 10.5023997983539 1.38810326100159 0 0 2 0 16 4 15 2 Etfb -4.42618742612512 1.81057475370616 12.9860745806193 0.000313816184911595 0.00178141426360264 0.742663378558866 53 0 0.700159986556928 0.694051630500793 0 6.92336424269299 1.10744485339922 11.8678284042968 0 0 1 1 0 20 2 29 0 Mug-ps1 -6.72108078472146 0.872908002029441 12.9104496150929 0.000326752794047351 0.00184566800994073 1.03727294969605 31 0 0 0 0 16.8038396773663 0 4.25639295019716 0 0 0 0 0 24 0 7 0 Gm16596 5.74978562564206 -0.223536957487372 12.8628518678679 0.000335169415722602 0.00188388326768221 0.403208283223198 12 1.22770638665139 2.23596595965423 1.7836959488103 2.10047995967078 0 0 0 0 3 3 3 3 0 0 0 0 Mir297c 6.35987297081253 0.398055363685947 12.7928346540932 0.000347949488780715 0.00194612924852351 0.86476711912211 16 4.16195721389071 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6 34 28 51 25 Mir340 -1.24781368093967 8.59679560345445 12.360285434567 0.000438563635265595 0.0023166717955465 0.11588698056633 5906 175.120167093826 82.3880344880466 585.838327448187 100.671923705414 896.622349821346 438.789203407335 966.220781448561 524.008981028099 288 238 1058 246 1203 738 1380 755 Pknox1 -5.96867464377884 0.108276776805556 12.3202806513909 0.00044806332818544 0.00235594588691054 0.585510339236401 16 0 0 0 0 3.32233456019766 0.818470924434263 5.21725390585987 0.594565316270102 0 0 0 0 6 2 7 1 Mir3107 1.3508075738813 10.2573409434783 12.2375775967787 0.000468365962224657 0.00245140166467126 0.137805722557386 16873 1553.00460609751 1938.04284278958 2747.75040515264 1553.58342682196 273.126719374239 343.861626980457 820.517101745348 1165.68358696641 2612 2768 3959 2555 789 621 2005 1564 Mir486 1.35080726179605 10.2573415082787 12.2166008121444 0.000473661512742678 0.00246779810976893 0.13804319607134 16873 1828.8178848867 1921.13491322619 2407.29424140437 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