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view rgedgeR/tool_dependencies.xml @ 21:1a0934f5eb95 draft

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author fubar
date Wed, 12 Jun 2013 09:10:26 -0400
parents 3b3066dea1a7
children ca67d0e707ba
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R3" version="3.0.1">
        <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
    </package>
    <package name="package_BioCBasics" version="2.12">
        <install version="1.0"> 
            <actions>
                <action type="set_environment_for_install">
                      <package name="R3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1">
                            <repository name="package_R3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
                        </package>
                    
                </action>
                <action type="shell_command">$R_HOME/R CMD BATCH installBioC.R </action>
            </actions>
        </install>
        <readme>Installs some basic bioc packages for the edgeR tool

       </readme>
    </package>
</tool_dependency>