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view rgedgeR/tool_dependencies.xml @ 17:13b7fdf4cba9 draft

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author fubar
date Wed, 12 Jun 2013 07:44:46 -0400
parents 1eb7a4834c1a
children 3f316c8adf4c
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<?xml version="1.0"?>
<tool_dependency>
    <package name="package_BioCBasics" version="2.12">
        <install version="1.0">
            <actions>
                <action type="set_environment_for_install">
                    <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
                    <set_environment toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.0">
                        <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>   
                    </set_environment>
                </action>
                <action type="shell_command">R CMD BATCH installBioC.R </action>
            </actions>
        </install>
        <readme>R is a free software environment for statistical computing and graphics
                WARNING: See custom compilation options above
                Modified from an older version of R by Boris by Ross Lazarus for R 3.0
                Added Bioc basics via this package installBioC.R script
       </readme>
    </package>
</tool_dependency>