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comparison rgedgeR/rgedgeRpaired.xml @ 32:f18d9aedcf58 draft

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author fubar
date Wed, 12 Jun 2013 23:36:20 -0400
parents 511f1b00d458
children 697272b8ef42
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31:511f1b00d458 32:f18d9aedcf58
1 <tool id="rgedgeRpaired" name="edgeR" version="0.18"> 1 <tool id="rgedgeRpaired" name="edgeR" version="0.18">
2 <description>1 or 2 level models for count data</description> 2 <description>1 or 2 level models for count data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.12">biocbasics</requirement> 4 <requirement type="package" version="2.12">biocbasics</requirement>
5 <requirement type="package" version="3.0.1">package_r</requirement> 5 <requirement type="package" version="3.0.1">package_r3</requirement>
6 </requirements> 6 </requirements>
7 7
8 <command interpreter="python"> 8 <command interpreter="python">
9 rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "edgeR" 9 rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "edgeR"
10 --output_dir "$html_file.files_path" --output_html "$html_file" --output_tab "$outtab" --make_HTML "yes" 10 --output_dir "$html_file.files_path" --output_html "$html_file" --output_tab "$outtab" --make_HTML "yes"