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comparison rgedgeR/rgedgeRpaired.xml @ 10:957b847eaed6 draft

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Uploaded
author fubar
date Wed, 12 Jun 2013 04:21:33 -0400
parents 9d76bc6a30a6
children b2ec6ec6ef74
comparison
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9:9d76bc6a30a6 10:957b847eaed6
1 <tool id="rgedgeRpaired" name="edgeR" version="0.18"> 1 <tool id="rgedgeRpaired" name="edgeR" version="0.18">
2 <description>1 or 2 level models for count data</description> 2 <description>1 or 2 level models for count data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="6.2">readline</requirement> 4 <requirement type="package" version="6.2">readline</requirement>
5 <requirement type="package" version="3.0.1">package_R</requirement> 5 <requirement type="package" version="3.0.1">package_R</requirement>
6 <requirement type="package" version="2.12">npackage_BioCBasics</requirement> 6 <requirement type="package" version="2.12">package_BioCBasics</requirement>
7 </requirements> 7 </requirements>
8 8
9 <command interpreter="python"> 9 <command interpreter="python">
10 rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "edgeR" 10 rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "edgeR"
11 --output_dir "$html_file.files_path" --output_html "$html_file" --output_tab "$outtab" --make_HTML "yes" 11 --output_dir "$html_file.files_path" --output_html "$html_file" --output_tab "$outtab" --make_HTML "yes"