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comparison rgedgeR/rgedgeRpaired.xml @ 5:06e51c47590d draft

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author fubar
date Wed, 12 Jun 2013 03:51:48 -0400
parents dea65c85afb4
children 7ef84c58999a
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4:dea65c85afb4 5:06e51c47590d
1 <tool id="rgedgeRpaired" name="edgeR" version="0.18"> 1 <tool id="rgedgeRpaired" name="edgeR" version="0.18">
2 <description>1 or 2 level models for count data</description> 2 <description>1 or 2 level models for count data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="6.2">">name=package_readline_6_2</requirement> 4 <requirement type="package" version="6.2">name=package_readline_6_2</requirement>
5 <requirement type="package" version="3.0.1">">name=package_R</requirement> 5 <requirement type="package" version="3.0.1">name=package_R</requirement>
6 <requirement type="package" version="2.12">">name=package_BioCBasics</requirement> 6 <requirement type="package" version="2.12">name=package_BioCBasics</requirement>
7 </requirements> 7 </requirements>
8 8
9 <command interpreter="python"> 9 <command interpreter="python">
10 rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "edgeR" 10 rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "edgeR"
11 --output_dir "$html_file.files_path" --output_html "$html_file" --output_tab "$outtab" --make_HTML "yes" 11 --output_dir "$html_file.files_path" --output_html "$html_file" --output_tab "$outtab" --make_HTML "yes"