changeset 107:d6d45ba6f9d8 draft

consolidated from baker version. includes anscombe robust fit option. Heatmap is wrong still and the r packages won't export with all their dependencies so testing is painful

--- a/rgToolFactory.py	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,631 +0,0 @@
-# rgToolFactory.py
-# see https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home
-# 
-# copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012
-# 
-# all rights reserved
-# Licensed under the LGPL
-# suggestions for improvement and bug fixes welcome at https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home
-#
-# august 2013
-# found a problem with GS if $TMP or $TEMP missing - now inject /tmp and warn
-#
-# july 2013
-# added ability to combine images and individual log files into html output
-# just make sure there's a log file foo.log and it will be output
-# together with all images named like "foo_*.pdf
-# otherwise old format for html
-#
-# January 2013
-# problem pointed out by Carlos Borroto
-# added escaping for <>$ - thought I did that ages ago...
-#
-# August 11 2012 
-# changed to use shell=False and cl as a sequence
-
-# This is a Galaxy tool factory for simple scripts in python, R or whatever ails ye.
-# It also serves as the wrapper for the new tool.
-# 
-# you paste and run your script
-# Only works for simple scripts that read one input from the history.
-# Optionally can write one new history dataset,
-# and optionally collect any number of outputs into links on an autogenerated HTML page.
-
-# DO NOT install on a public or important site - please.
-
-# installed generated tools are fine if the script is safe.
-# They just run normally and their user cannot do anything unusually insecure
-# but please, practice safe toolshed.
-# Read the fucking code before you install any tool 
-# especially this one
-
-# After you get the script working on some test data, you can
-# optionally generate a toolshed compatible gzip file
-# containing your script safely wrapped as an ordinary Galaxy script in your local toolshed for
-# safe and largely automated installation in a production Galaxy.
-
-# If you opt for an HTML output, you get all the script outputs arranged
-# as a single Html history item - all output files are linked, thumbnails for all the pdfs.
-# Ugly but really inexpensive.
-# 
-# Patches appreciated please. 
-#
-#
-# long route to June 2012 product
-# Behold the awesome power of Galaxy and the toolshed with the tool factory to bind them
-# derived from an integrated script model  
-# called rgBaseScriptWrapper.py
-# Note to the unwary:
-#   This tool allows arbitrary scripting on your Galaxy as the Galaxy user
-#   There is nothing stopping a malicious user doing whatever they choose
-#   Extremely dangerous!!
-#   Totally insecure. So, trusted users only
-#
-# preferred model is a developer using their throw away workstation instance - ie a private site.
-# no real risk. The universe_wsgi.ini admin_users string is checked - only admin users are permitted to run this tool.
-#
-
-import sys 
-import shutil 
-import subprocess 
-import os 
-import time 
-import tempfile 
-import optparse
-import tarfile
-import re
-import shutil
-import math
-
-progname = os.path.split(sys.argv[0])[1] 
-myversion = 'V000.2 June 2012' 
-verbose = False 
-debug = False
-toolFactoryURL = 'https://bitbucket.org/fubar/galaxytoolfactory'
-
-def timenow():
-    """return current time as a string
-    """
-    return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time()))
-
-html_escape_table = {
-     "&": "&amp;",
-     ">": "&gt;",
-     "<": "&lt;",
-     "$": "\$"
-     }
-
-def html_escape(text):
-     """Produce entities within text."""
-     return "".join(html_escape_table.get(c,c) for c in text)
-
-def cmd_exists(cmd):
-     return subprocess.call("type " + cmd, shell=True, 
-           stdout=subprocess.PIPE, stderr=subprocess.PIPE) == 0
-
-
-class ScriptRunner:
-    """class is a wrapper for an arbitrary script
-    """
-
-    def __init__(self,opts=None,treatbashSpecial=True):
-        """
-        cleanup inputs, setup some outputs
-        
-        """
-        self.useGM = cmd_exists('gm')
-        self.useIM = cmd_exists('convert')
-        self.useGS = cmd_exists('gs')
-        self.temp_warned = False # we want only one warning if $TMP not set
-        self.treatbashSpecial = treatbashSpecial
-        if opts.output_dir: # simplify for the tool tarball
-            os.chdir(opts.output_dir)
-        self.thumbformat = 'png'
-        self.opts = opts
-        self.toolname = re.sub('[^a-zA-Z0-9_]+', '', opts.tool_name) # a sanitizer now does this but..
-        self.toolid = self.toolname
-        self.myname = sys.argv[0] # get our name because we write ourselves out as a tool later
-        self.pyfile = self.myname # crude but efficient - the cruft won't hurt much
-        self.xmlfile = '%s.xml' % self.toolname
-        s = open(self.opts.script_path,'r').readlines()
-        s = [x.rstrip() for x in s] # remove pesky dos line endings if needed
-        self.script = '\n'.join(s)
-        fhandle,self.sfile = tempfile.mkstemp(prefix=self.toolname,suffix=".%s" % (opts.interpreter))
-        tscript = open(self.sfile,'w') # use self.sfile as script source for Popen
-        tscript.write(self.script)
-        tscript.close()
-        self.indentedScript = '\n'.join([' %s' % x for x in s]) # for restructured text in help
-        self.escapedScript = '\n'.join([html_escape(x) for x in s])
-        self.elog = os.path.join(self.opts.output_dir,"%s_error.log" % self.toolname)
-        if opts.output_dir: # may not want these complexities 
-            self.tlog = os.path.join(self.opts.output_dir,"%s_runner.log" % self.toolname)
-            art = '%s.%s' % (self.toolname,opts.interpreter)
-            artpath = os.path.join(self.opts.output_dir,art) # need full path
-            artifact = open(artpath,'w') # use self.sfile as script source for Popen
-            artifact.write(self.script)
-            artifact.close()
-        self.cl = []
-        self.html = []
-        a = self.cl.append
-        a(opts.interpreter)
-        if self.treatbashSpecial and opts.interpreter in ['bash','sh']:
-            a(self.sfile)
-        else:
-            a('-') # stdin
-        a(opts.input_tab)
-        a(opts.output_tab)
-        self.outFormats = 'tabular' # TODO make this an option at tool generation time
-        self.inputFormats = 'tabular' # TODO make this an option at tool generation time
-        self.test1Input = '%s_test1_input.xls' % self.toolname
-        self.test1Output = '%s_test1_output.xls' % self.toolname
-        self.test1HTML = '%s_test1_output.html' % self.toolname
-
-    def makeXML(self):
-        """
-        Create a Galaxy xml tool wrapper for the new script as a string to write out
-        fixme - use templating or something less fugly than this example of what we produce
-
-        <tool id="reverse" name="reverse" version="0.01">
-            <description>a tabular file</description>
-            <command interpreter="python">
-            reverse.py --script_path "$runMe" --interpreter "python" 
-            --tool_name "reverse" --input_tab "$input1" --output_tab "$tab_file" 
-            </command>
-            <inputs>
-            <param name="input1"  type="data" format="tabular" label="Select a suitable input file from your history"/><param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="reverse"/>
-
-            </inputs>
-            <outputs>
-            <data format="tabular" name="tab_file" label="${job_name}"/>
-
-            </outputs>
-            <help>
-            
-**What it Does**
-
-Reverse the columns in a tabular file
-
-            </help>
-            <configfiles>
-            <configfile name="runMe">
-            
-# reverse order of columns in a tabular file
-import sys
-inp = sys.argv[1]
-outp = sys.argv[2]
-i = open(inp,'r')
-o = open(outp,'w')
-for row in i:
-     rs = row.rstrip().split('\t')
-     rs.reverse()
-     o.write('\t'.join(rs))
-     o.write('\n')
-i.close()
-o.close()
- 
-
-            </configfile>
-            </configfiles>
-            </tool>
-        
-        """ 
-        newXML="""<tool id="%(toolid)s" name="%(toolname)s" version="%(tool_version)s">
-            %(tooldesc)s
-            %(command)s
-            <inputs>
-            %(inputs)s
-            </inputs>
-            <outputs>
-            %(outputs)s
-            </outputs>
-            <configfiles>
-            <configfile name="runMe">
-            %(script)s
-            </configfile>
-            </configfiles>
-            %(tooltests)s
-            <help>
-            %(help)s
-            </help>
-            </tool>""" # needs a dict with toolname, toolid, interpreter, scriptname, command, inputs as a multi line string ready to write, outputs ditto, help ditto
-               
-        newCommand="""<command interpreter="python">
-            %(toolname)s.py --script_path "$runMe" --interpreter "%(interpreter)s" 
-            --tool_name "%(toolname)s" %(command_inputs)s %(command_outputs)s 
-            </command>""" # may NOT be an input or htmlout
-        tooltestsTabOnly = """<tests><test>
-        <param name="input1" value="%(test1Input)s" ftype="tabular"/>
-        <param name="job_name" value="test1"/>
-        <param name="runMe" value="$runMe"/>
-        <output name="tab_file" file="%(test1Output)s" ftype="tabular"/>
-        </test></tests>"""
-        tooltestsHTMLOnly = """<tests><test>
-        <param name="input1" value="%(test1Input)s" ftype="tabular"/>
-        <param name="job_name" value="test1"/>
-        <param name="runMe" value="$runMe"/>
-        <output name="html_file" file="%(test1HTML)s" ftype="html" lines_diff="5"/>
-        </test></tests>"""
-        tooltestsBoth = """<tests><test>
-        <param name="input1" value="%(test1Input)s" ftype="tabular"/>
-        <param name="job_name" value="test1"/>
-        <param name="runMe" value="$runMe"/>
-        <output name="tab_file" file="%(test1Output)s" ftype="tabular" />
-        <output name="html_file" file="%(test1HTML)s" ftype="html" lines_diff="10"/>
-        </test></tests>"""
-        xdict = {}
-        xdict['tool_version'] = self.opts.tool_version
-        xdict['test1Input'] = self.test1Input
-        xdict['test1HTML'] = self.test1HTML
-        xdict['test1Output'] = self.test1Output   
-        if self.opts.make_HTML and self.opts.output_tab <> 'None':
-            xdict['tooltests'] = tooltestsBoth % xdict
-        elif self.opts.make_HTML:
-            xdict['tooltests'] = tooltestsHTMLOnly % xdict
-        else:
-            xdict['tooltests'] = tooltestsTabOnly % xdict
-        xdict['script'] = self.escapedScript 
-        # configfile is least painful way to embed script to avoid external dependencies
-        # but requires escaping of <, > and $ to avoid Mako parsing
-        if self.opts.help_text:
-            xdict['help'] = open(self.opts.help_text,'r').read()
-        else:
-            xdict['help'] = 'Please ask the tool author for help as none was supplied at tool generation'
-        coda = ['**Script**','Pressing execute will run the following code over your input file and generate some outputs in your history::']
-        coda.append(self.indentedScript)
-        coda.append('**Attribution** This Galaxy tool was created by %s at %s\nusing the Galaxy Tool Factory.' % (self.opts.user_email,timenow()))
-        coda.append('See %s for details of that project' % (toolFactoryURL))
-        coda.append('Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. ')
-        coda.append('Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573')
-        xdict['help'] = '%s\n%s' % (xdict['help'],'\n'.join(coda))
-        if self.opts.tool_desc:
-            xdict['tooldesc'] = '<description>%s</description>' % self.opts.tool_desc
-        else:
-            xdict['tooldesc'] = ''
-        xdict['command_outputs'] = '' 
-        xdict['outputs'] = '' 
-        if self.opts.input_tab <> 'None':
-            xdict['command_inputs'] = '--input_tab "$input1" ' # the space may matter a lot if we append something
-            xdict['inputs'] = '<param name="input1"  type="data" format="%s" label="Select a suitable input file from your history"/> \n' % self.inputFormats
-        else:
-            xdict['command_inputs'] = '' # assume no input - eg a random data generator       
-            xdict['inputs'] = ''
-        xdict['inputs'] += '<param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="%s"/> \n' % self.toolname
-        xdict['toolname'] = self.toolname
-        xdict['toolid'] = self.toolid
-        xdict['interpreter'] = self.opts.interpreter
-        xdict['scriptname'] = self.sfile
-        if self.opts.make_HTML:
-            xdict['command_outputs'] += ' --output_dir "$html_file.files_path" --output_html "$html_file" --make_HTML "yes" '
-            xdict['outputs'] +=  ' <data format="html" name="html_file" label="${job_name}.html"/>\n'
-        if self.opts.output_tab <> 'None':
-            xdict['command_outputs'] += ' --output_tab "$tab_file"'
-            xdict['outputs'] += ' <data format="%s" name="tab_file" label="${job_name}"/>\n' % self.outFormats
-        xdict['command'] = newCommand % xdict
-        xmls = newXML % xdict
-        xf = open(self.xmlfile,'w')
-        xf.write(xmls)
-        xf.write('\n')
-        xf.close()
-        # ready for the tarball
-
-
-    def makeTooltar(self):
-        """
-        a tool is a gz tarball with eg
-        /toolname/tool.xml /toolname/tool.py /toolname/test-data/test1_in.foo ...
-        """
-        retval = self.run()
-        if retval:
-            print >> sys.stderr,'## Run failed. Cannot build yet. Please fix and retry'
-            sys.exit(1)
-        self.makeXML()
-        tdir = self.toolname
-        os.mkdir(tdir)
-        if self.opts.input_tab <> 'None': # no reproducible test otherwise? TODO: maybe..
-            testdir = os.path.join(tdir,'test-data')
-            os.mkdir(testdir) # make tests directory
-            shutil.copyfile(self.opts.input_tab,os.path.join(testdir,self.test1Input))
-            if self.opts.output_tab <> 'None':
-                shutil.copyfile(self.opts.output_tab,os.path.join(testdir,self.test1Output))
-            if self.opts.make_HTML:
-                shutil.copyfile(self.opts.output_html,os.path.join(testdir,self.test1HTML))
-            if self.opts.output_dir:
-                shutil.copyfile(self.tlog,os.path.join(testdir,'test1_out.log'))
-        op = '%s.py' % self.toolname # new name
-        outpiname = os.path.join(tdir,op) # path for the tool tarball
-        pyin = os.path.basename(self.pyfile) # our name - we rewrite ourselves (TM)
-        notes = ['# %s - a self annotated version of %s generated by running %s\n' % (op,pyin,pyin),]
-        notes.append('# to make a new Galaxy tool called %s\n' % self.toolname)
-        notes.append('# User %s at %s\n' % (self.opts.user_email,timenow()))
-        pi = open(self.pyfile,'r').readlines() # our code becomes new tool wrapper (!) - first Galaxy worm
-        notes += pi
-        outpi = open(outpiname,'w')
-        outpi.write(''.join(notes))
-        outpi.write('\n')
-        outpi.close()
-        stname = os.path.join(tdir,self.sfile)
-        if not os.path.exists(stname):
-            shutil.copyfile(self.sfile, stname)
-        xtname = os.path.join(tdir,self.xmlfile)
-        if not os.path.exists(xtname):
-            shutil.copyfile(self.xmlfile,xtname)
-        tarpath = "%s.gz" % self.toolname
-        tar = tarfile.open(tarpath, "w:gz")
-        tar.add(tdir,arcname=self.toolname)
-        tar.close()
-        shutil.copyfile(tarpath,self.opts.new_tool)
-        shutil.rmtree(tdir)
-        ## TODO: replace with optional direct upload to local toolshed?
-        return retval
-
-
-    def compressPDF(self,inpdf=None,thumbformat='png'):
-        """need absolute path to pdf
-           note that GS gets confoozled if no $TMP or $TEMP
-           so we set it
-        """
-        assert os.path.isfile(inpdf), "## Input %s supplied to %s compressPDF not found" % (inpdf,self.myName)
-        our_env = os.environ.copy()
-        if not (our_env.get('TMP',None) or our_env.get('TEMP',None)):
-            our_env['TMP'] = '/tmp'
-            if not self.temp_warned:
-               print >> sys.stdout,'## WARNING - no $TMP or $TEMP!!! Please fix - using /tmp temporarily'
-               self.temp_warned = True          
-        hlog = os.path.join(self.opts.output_dir,"compress_%s.txt" % os.path.basename(inpdf))
-        sto = open(hlog,'w')
-        outpdf = '%s_compressed' % inpdf
-        cl = ["gs", "-sDEVICE=pdfwrite", "-dNOPAUSE", "-dUseCIEColor", "-dBATCH","-dPDFSETTINGS=/printer", "-sOutputFile=%s" % outpdf,inpdf]
-        x = subprocess.Popen(cl,stdout=sto,stderr=sto,cwd=self.opts.output_dir,env=our_env)
-        retval1 = x.wait()
-        sto.close()
-        if retval1 == 0:
-            os.unlink(inpdf)
-            shutil.move(outpdf,inpdf)
-            os.unlink(hlog)
-        else:
-            x = open(hlog,'r').readlines()
-            print >> sys.stdout,x
-        hlog = os.path.join(self.opts.output_dir,"thumbnail_%s.txt" % os.path.basename(inpdf))
-        sto = open(hlog,'w')
-        outpng = '%s.%s' % (os.path.splitext(inpdf)[0],thumbformat)
-        if self.useGM:        
-            cl2 = ['gm', 'convert', inpdf, outpng]
-        else: # assume imagemagick
-            cl2 = ['convert', inpdf, outpng]
-        x = subprocess.Popen(cl2,stdout=sto,stderr=sto,cwd=self.opts.output_dir,env=our_env)
-        retval2 = x.wait()
-        sto.close()
-        if retval2 <> 0:
-             x = open(hlog,'r').readlines()
-             print >> sys.stdout,x
-        else:
-             os.unlink(hlog)
-        retval = retval1 or retval2
-        return retval
-
-
-    def getfSize(self,fpath,outpath):
-        """
-        format a nice file size string
-        """
-        size = ''
-        fp = os.path.join(outpath,fpath)
-        if os.path.isfile(fp):
-            size = '0 B'
-            n = float(os.path.getsize(fp))
-            if n > 2**20:
-                size = '%1.1f MB' % (n/2**20)
-            elif n > 2**10:
-                size = '%1.1f KB' % (n/2**10)
-            elif n > 0:
-                size = '%d B' % (int(n))
-        return size
-
-    def makeHtml(self):
-        """ Create an HTML file content to list all the artifacts found in the output_dir
-        """
-
-        galhtmlprefix = """<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> 
-        <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> 
-        <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> 
-        <meta name="generator" content="Galaxy %s tool output - see http://g2.trac.bx.psu.edu/" /> 
-        <title></title> 
-        <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> 
-        </head> 
-        <body> 
-        <div class="toolFormBody"> 
-        """ 
-        galhtmlattr = """<hr/><div class="infomessage">This tool (%s) was generated by the <a href="https://bitbucket.org/fubar/galaxytoolfactory/overview">Galaxy Tool Factory</a></div><br/>""" 
-        galhtmlpostfix = """</div></body></html>\n"""
-
-        flist = os.listdir(self.opts.output_dir)
-        flist = [x for x in flist if x <> 'Rplots.pdf']
-        flist.sort()
-        html = []
-        html.append(galhtmlprefix % progname)
-        html.append('<div class="infomessage">Galaxy Tool "%s" run at %s</div><br/>' % (self.toolname,timenow()))
-        fhtml = []
-        if len(flist) > 0:
-            logfiles = [x for x in flist if x.lower().endswith('.log')] # log file names determine sections
-            logfiles.sort()
-            logfiles = [x for x in logfiles if os.path.abspath(x) <> os.path.abspath(self.tlog)]
-            logfiles.append(os.path.abspath(self.tlog)) # make it the last one
-            pdflist = []
-            npdf = len([x for x in flist if os.path.splitext(x)[-1].lower() == '.pdf'])
-            for rownum,fname in enumerate(flist):
-                dname,e = os.path.splitext(fname)
-                sfsize = self.getfSize(fname,self.opts.output_dir)
-                if e.lower() == '.pdf' : # compress and make a thumbnail
-                    thumb = '%s.%s' % (dname,self.thumbformat)
-                    pdff = os.path.join(self.opts.output_dir,fname)
-                    retval = self.compressPDF(inpdf=pdff,thumbformat=self.thumbformat)
-                    if retval == 0:
-                        pdflist.append((fname,thumb))
-                    else:
-                        pdflist.append((fname,fname))
-                if (rownum+1) % 2 == 0:
-                    fhtml.append('<tr class="odd_row"><td><a href="%s">%s</a></td><td>%s</td></tr>' % (fname,fname,sfsize))
-                else:
-                    fhtml.append('<tr><td><a href="%s">%s</a></td><td>%s</td></tr>' % (fname,fname,sfsize))
-            for logfname in logfiles: # expect at least tlog - if more
-                if os.path.abspath(logfname) == os.path.abspath(self.tlog): # handled later
-                    sectionname = 'All tool run'
-                    if (len(logfiles) > 1):
-                        sectionname = 'Other'
-                    ourpdfs = pdflist
-                else:
-                    realname = os.path.basename(logfname)
-                    sectionname = os.path.splitext(realname)[0].split('_')[0] # break in case _ added to log
-                    ourpdfs = [x for x in pdflist if os.path.basename(x[0]).split('_')[0] == sectionname]
-                    pdflist = [x for x in pdflist if os.path.basename(x[0]).split('_')[0] <> sectionname] # remove
-                nacross = 1
-                npdf = len(ourpdfs)
-
-                if npdf > 0:
-                    nacross = math.sqrt(npdf) ## int(round(math.log(npdf,2)))
-                    if int(nacross)**2 != npdf:
-                        nacross += 1
-                    nacross = int(nacross)
-                    width = min(400,int(1200/nacross))
-                    html.append('<div class="toolFormTitle">%s images and outputs</div>' % sectionname)
-                    html.append('(Click on a thumbnail image to download the corresponding original PDF image)<br/>')
-                    ntogo = nacross # counter for table row padding with empty cells
-                    html.append('<div><table class="simple" cellpadding="2" cellspacing="2">\n<tr>')
-                    for i,paths in enumerate(ourpdfs): 
-                        fname,thumb = paths
-                        s= """<td><a href="%s"><img src="%s" title="Click to download a PDF of %s" hspace="5" width="%d" 
-                           alt="Image called %s"/></a></td>\n""" % (fname,thumb,fname,width,fname)
-                        if ((i+1) % nacross == 0):
-                            s += '</tr>\n'
-                            ntogo = 0
-                            if i < (npdf - 1): # more to come
-                               s += '<tr>'
-                               ntogo = nacross
-                        else:
-                            ntogo -= 1
-                        html.append(s)
-                    if html[-1].strip().endswith('</tr>'):
-                        html.append('</table></div>\n')
-                    else:
-                        if ntogo > 0: # pad
-                           html.append('<td>&nbsp;</td>'*ntogo)
-                        html.append('</tr></table></div>\n')
-                logt = open(logfname,'r').readlines()
-                logtext = [x for x in logt if x.strip() > '']
-                html.append('<div class="toolFormTitle">%s log output</div>' % sectionname)
-                if len(logtext) > 1:
-                    html.append('\n<pre>\n')
-                    html += logtext
-                    html.append('\n</pre>\n')
-                else:
-                    html.append('%s is empty<br/>' % logfname)
-        if len(fhtml) > 0:
-           fhtml.insert(0,'<div><table class="colored" cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr>\n')
-           fhtml.append('</table></div><br/>')
-           html.append('<div class="toolFormTitle">All output files available for downloading</div>\n')
-           html += fhtml # add all non-pdf files to the end of the display
-        else:
-            html.append('<div class="warningmessagelarge">### Error - %s returned no files - please confirm that parameters are sane</div>' % self.opts.interpreter)
-        html.append(galhtmlpostfix)
-        htmlf = file(self.opts.output_html,'w')
-        htmlf.write('\n'.join(html))
-        htmlf.write('\n')
-        htmlf.close()
-        self.html = html
-
-
-    def run(self):
-        """
-        scripts must be small enough not to fill the pipe!
-        """
-        if self.treatbashSpecial and self.opts.interpreter in ['bash','sh']:
-          retval = self.runBash()
-        else:
-            if self.opts.output_dir:
-                ste = open(self.elog,'w')
-                sto = open(self.tlog,'w')
-                sto.write('## Toolfactory generated command line = %s\n' % ' '.join(self.cl))
-                sto.flush()
-                p = subprocess.Popen(self.cl,shell=False,stdout=sto,stderr=ste,stdin=subprocess.PIPE,cwd=self.opts.output_dir)
-            else:
-                p = subprocess.Popen(self.cl,shell=False,stdin=subprocess.PIPE)
-            p.stdin.write(self.script)
-            p.stdin.close()
-            retval = p.wait()
-            if self.opts.output_dir:
-                sto.close()
-                ste.close()
-                err = open(self.elog,'r').readlines()
-                if retval <> 0 and err: # problem
-                    print >> sys.stderr,err
-            if self.opts.make_HTML:
-                self.makeHtml()
-        return retval
-
-    def runBash(self):
-        """
-        cannot use - for bash so use self.sfile
-        """
-        if self.opts.output_dir:
-            s = '## Toolfactory generated command line = %s\n' % ' '.join(self.cl)
-            sto = open(self.tlog,'w')
-            sto.write(s)
-            sto.flush()
-            p = subprocess.Popen(self.cl,shell=False,stdout=sto,stderr=sto,cwd=self.opts.output_dir)
-        else:
-            p = subprocess.Popen(self.cl,shell=False)            
-        retval = p.wait()
-        if self.opts.output_dir:
-            sto.close()
-        if self.opts.make_HTML:
-            self.makeHtml()
-        return retval
-  
-
-def main():
-    u = """
-    This is a Galaxy wrapper. It expects to be called by a special purpose tool.xml as:
-    <command interpreter="python">rgBaseScriptWrapper.py --script_path "$scriptPath" --tool_name "foo" --interpreter "Rscript"
-    </command>
-    """
-    op = optparse.OptionParser()
-    a = op.add_option
-    a('--script_path',default=None)
-    a('--tool_name',default=None)
-    a('--interpreter',default=None)
-    a('--output_dir',default=None)
-    a('--output_html',default=None)
-    a('--input_tab',default="None")
-    a('--output_tab',default="None")
-    a('--user_email',default='Unknown')
-    a('--bad_user',default=None)
-    a('--make_Tool',default=None)
-    a('--make_HTML',default=None)
-    a('--help_text',default=None)
-    a('--tool_desc',default=None)
-    a('--new_tool',default=None)
-    a('--tool_version',default=None)
-    opts, args = op.parse_args()
-    assert not opts.bad_user,'UNAUTHORISED: %s is NOT authorized to use this tool until Galaxy admin adds %s to admin_users in universe_wsgi.ini' % (opts.bad_user,opts.bad_user)
-    assert opts.tool_name,'## Tool Factory expects a tool name - eg --tool_name=DESeq'
-    assert opts.interpreter,'## Tool Factory wrapper expects an interpreter - eg --interpreter=Rscript'
-    assert os.path.isfile(opts.script_path),'## Tool Factory wrapper expects a script path - eg --script_path=foo.R'
-    if opts.output_dir:
-        try:
-            os.makedirs(opts.output_dir)
-        except:
-            pass
-    r = ScriptRunner(opts)
-    if opts.make_Tool:
-        retcode = r.makeTooltar()
-    else:
-        retcode = r.run()
-    os.unlink(r.sfile)
-    if retcode:
-        sys.exit(retcode) # indicate failure to job runner
-
-
-if __name__ == "__main__":
-    main()
-
-

--- a/rgedgeRpaired.xml.camera	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1084 +0,0 @@
-<tool id="rgDifferentialCount" name="Differential_Count" version="0.30">
-  <description>models using BioConductor packages</description>
-  <requirements>
-      <requirement type="package" version="2.14">biocbasics</requirement>
-      <requirement type="package" version="3.0.2">r302</requirement>
-      <requirement type="package" version="1.3.18">graphicsmagick</requirement>
-      <requirement type="package" version="9.10">ghostscript</requirement>
-  </requirements>
-  
-  <command interpreter="python">
-     rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "DifferentialCounts" 
-    --output_dir "$html_file.files_path" --output_html "$html_file" --make_HTML "yes"
-  </command>
-  <inputs>
-    <param name="input1"  type="data" format="tabular" label="Select an input matrix - rows are contigs, columns are counts for each sample"
-       help="Use the HTSeq based count matrix preparation tool to create these matrices from BAM/SAM files and a GTF file of genomic features"/>
-    <param name="title" type="text" value="Differential Counts" size="80" label="Title for job outputs" 
-           help="Supply a meaningful name here to remind you what the outputs contain">
-      <sanitizer invalid_char="">
-        <valid initial="string.letters,string.digits"><add value="_" /> </valid>
-      </sanitizer>
-    </param>
-    <param name="treatment_name" type="text" value="Treatment" size="50" label="Treatment Name"/>
-    <param name="Treat_cols" label="Select columns containing treatment." type="data_column" data_ref="input1" numerical="True" 
-         multiple="true" use_header_names="true" size="120" display="checkboxes">
-        <validator type="no_options" message="Please select at least one column."/>
-    </param>
-    <param name="control_name" type="text" value="Control" size="50" label="Control Name"/>
-    <param name="Control_cols" label="Select columns containing control." type="data_column" data_ref="input1" numerical="True" 
-         multiple="true" use_header_names="true" size="120" display="checkboxes" optional="true">
-    </param>
-    <param name="subjectids" type="text" optional="true" size="120" value = ""
-       label="IF SUBJECTS NOT ALL INDEPENDENT! Enter comma separated strings to indicate sample labels for (eg) pairing - must be one for every column in input"
-       help="Leave blank if no pairing, but eg if data from sample id A99 is in columns 2,4 and id C21 is in 3,5 then enter 'A99,C21,A99,C21'">
-      <sanitizer>
-        <valid initial="string.letters,string.digits"><add value="," /> </valid>
-      </sanitizer>
-    </param>
-    <param name="fQ" type="float" value="0.3" size="5" label="Non-differential contig count quantile threshold - zero to analyze all non-zero read count contigs"
-     help="May be a good or a bad idea depending on the biology and the question. EG 0.3 = sparsest 30% of contigs with at least one read are removed before analysis"/>
-    <param name="useNDF" type="boolean" truevalue="T" falsevalue="F" checked="false" size="1" 
-              label="Non differential filter - remove contigs below a threshold (1 per million) for half or more samples"
-     help="May be a good or a bad idea depending on the biology and the question. This was the old default. Quantile based is available as an alternative"/>
-
-    <conditional name="edgeR">
-        <param name="doedgeR" type="select" 
-           label="Run this model using edgeR"
-           help="edgeR uses a negative binomial model and seems to be powerful, even with few replicates">
-          <option value="F">Do not run edgeR</option>
-          <option value="T" selected="true">Run edgeR</option>
-         </param>
-         <when value="T">
-          <param name="edgeR_priordf" type="integer" value="20" size="3" 
-           label="prior.df for tagwise dispersion - lower value = more emphasis on each tag's variance. Replaces prior.n  and prior.df = prior.n * residual.df"
-           help="0 = Use edgeR default. Use a small value to 'smooth' small samples. See edgeR docs and note below"/>
-         </when>
-         <when value="F"></when>
-    </conditional>
-    <conditional name="DESeq2">
-    <param name="doDESeq2" type="select" 
-       label="Run the same model with DESeq2 and compare findings"
-       help="DESeq2 is an update to the DESeq package. It uses different assumptions and methods to edgeR">
-      <option value="F" selected="true">Do not run DESeq2</option>
-      <option value="T">Run DESeq2</option>
-     </param>
-     <when value="T">
-         <param name="DESeq_fitType" type="select">
-            <option value="parametric" selected="true">Parametric (default) fit for dispersions</option>
-            <option value="local">Local fit - this will automagically be used if parametric fit fails</option>
-            <option value="mean">Mean dispersion fit- use this if you really understand what you're doing - read the fine manual linked below in the documentation</option>
-         </param> 
-     </when>
-     <when value="F"> </when>
-    </conditional>
-    <param name="doVoom" type="select" 
-       label="Run the same model with Voom/limma and compare findings"
-       help="Voom uses counts per million and a precise transformation of variance so count data can be analysed using limma">
-      <option value="F" selected="true">Do not run VOOM</option>
-      <option value="T">Run VOOM</option>
-     </param>
-    <!--
-    <conditional name="camera">
-        <param name="doCamera" type="select" label="Run the edgeR implementation of Camera GSEA for up/down gene sets" 
-            help="If yes, you can choose a set of genesets to test and/or supply a gmt format geneset collection from your history">
-        <option value="F" selected="true">Do not run GSEA tests with the Camera algorithm</option>
-        <option value="T">Run GSEA tests with the Camera algorithm</option>
-        </param>
-         <when value="T">
-         <conditional name="gmtSource">
-          <param name="refgmtSource" type="select" 
-             label="Use a gene set (.gmt) from your history and/or use a built-in (MSigDB etc) gene set">
-            <option value="indexed" selected="true">Use a built-in gene set</option>
-            <option value="history">Use a gene set from my history</option>
-            <option value="both">Add a gene set from my history to a built in gene set</option>
-          </param>
-          <when value="indexed">
-            <param name="builtinGMT" type="select" label="Select a gene set matrix (.gmt) file to use for the analysis">
-              <options from_data_table="gseaGMT_3.1">
-                <filter type="sort_by" column="2" />
-                <validator type="no_options" message="No GMT v3.1 files are available - please install them"/>
-              </options>
-            </param>
-          </when>
-          <when value="history">
-            <param name="ownGMT" type="data" format="gmt" label="Select a Gene Set from your history" />
-          </when>
-          <when value="both">
-            <param name="ownGMT" type="data" format="gseagmt" label="Select a Gene Set from your history" />
-            <param name="builtinGMT" type="select" label="Select a gene set matrix (.gmt) file to use for the analysis">
-              <options from_data_table="gseaGMT_4">
-                <filter type="sort_by" column="2" />
-                <validator type="no_options" message="No GMT v4 files are available - please fix tool_data_table and loc files"/>
-              </options>
-            </param>
-           </when>
-         </conditional>
-         </when>
-         <when value="F"> 
-         </when>
-    </conditional>
-    -->
-    <param name="fdrthresh" type="float" value="0.05" size="5" label="P value threshold for FDR filtering for amily wise error rate control"
-     help="Conventional default value of 0.05 recommended"/>
-    <param name="fdrtype" type="select" label="FDR (Type II error) control method" 
-         help="Use fdr or bh typically to control for the number of tests in a reliable way">
-            <option value="fdr" selected="true">fdr</option>
-            <option value="BH">Benjamini Hochberg</option>
-            <option value="BY">Benjamini Yukateli</option>
-            <option value="bonferroni">Bonferroni</option>
-            <option value="hochberg">Hochberg</option>
-            <option value="holm">Holm</option>
-            <option value="hommel">Hommel</option>
-            <option value="none">no control for multiple tests</option>
-    </param>
-  </inputs>
-  <outputs>
-    <data format="tabular" name="out_edgeR" label="${title}_topTable_edgeR.xls">
-         <filter>edgeR['doedgeR'] == "T"</filter>
-    </data>
-    <data format="tabular" name="out_DESeq2" label="${title}_topTable_DESeq2.xls">
-         <filter>DESeq2['doDESeq2'] == "T"</filter>
-    </data>
-    <data format="tabular" name="out_VOOM" label="${title}_topTable_VOOM.xls">
-         <filter>doVoom == "T"</filter>
-    </data>
-    <data format="html" name="html_file" label="${title}.html"/>
-  </outputs>
- <stdio>
-     <exit_code range="4"   level="fatal"   description="Number of subject ids must match total number of samples in the input matrix" />
- </stdio>
- <tests>
-<test>
-<param name='input1' value='test_bams2mx.xls' ftype='tabular' />
- <param name='treatment_name' value='liver' />
- <param name='title' value='edgeRtest' />
- <param name='useNDF' value='' />
- <param name='doedgeR' value='T' />
- <param name='doVoom' value='T' />
- <param name='doDESeq2' value='T' />
- <param name='fdrtype' value='fdr' />
- <param name='edgeR_priordf' value="8" />
- <param name='fdrthresh' value="0.05" />
- <param name='control_name' value='heart' />
- <param name='subjectids' value='' />
- <param name='Control_cols' value='3,4,5,9' />
- <param name='Treat_cols' value='2,6,7,8' />
- <output name='out_edgeR' file='edgeRtest1out.xls' compare='diff' />
- <output name='html_file' file='edgeRtest1out.html'  compare='diff' lines_diff='20' />
-</test>
-</tests>
-
-<configfiles>
-<configfile name="runme">
-<![CDATA[
-# 
-# edgeR.Rscript
-# updated npv 2011 for R 2.14.0 and edgeR 2.4.0 by ross
-# Performs DGE on a count table containing n replicates of two conditions
-#
-# Parameters
-#
-# 1 - Output Dir
-
-# Original edgeR code by: S.Lunke and A.Kaspi
-reallybig = log10(.Machine\$double.xmax)
-reallysmall = log10(.Machine\$double.xmin)
-library('stringr')
-library('gplots')
-library('edgeR')
-hmap2 = function(cmat,nsamp=100,outpdfname='heatmap2.pdf', TName='Treatment',group=NA,myTitle='title goes here')
-{
-# Perform clustering for significant pvalues after controlling FWER
-    samples = colnames(cmat)
-    gu = unique(group)
-    gn = rownames(cmat)
-    if (length(gu) == 2) {
-        col.map = function(g) {if (g==gu[1]) "#FF0000" else "#0000FF"}
-        pcols = unlist(lapply(group,col.map))        
-        } else {
-        colours = rainbow(length(gu),start=0,end=4/6)
-        pcols = colours[match(group,gu)]        }
-    dm = cmat[(! is.na(gn)),] 
-    # remove unlabelled hm rows
-    nprobes = nrow(dm)
-    # sub = paste('Showing',nprobes,'contigs ranked for evidence of differential abundance')
-    if (nprobes > nsamp) {
-      dm =dm[1:nsamp,]
-      #sub = paste('Showing',nsamp,'contigs ranked for evidence for differential abundance out of',nprobes,'total')
-    }
-    newcolnames = substr(colnames(dm),1,20)
-    colnames(dm) = newcolnames
-    pdf(outpdfname)
-    heatmap.2(dm,main=myTitle,ColSideColors=pcols,col=topo.colors(100),dendrogram="col",key=T,density.info='none',
-         Rowv=F,scale='row',trace='none',margins=c(8,8),cexRow=0.4,cexCol=0.5)
-    dev.off()
-}
-
-hmap = function(cmat,nmeans=4,outpdfname="heatMap.pdf",nsamp=250,TName='Treatment',group=NA,myTitle="Title goes here")
-{
-    # for 2 groups only was
-    #col.map = function(g) {if (g==TName) "#FF0000" else "#0000FF"}
-    #pcols = unlist(lapply(group,col.map))
-    gu = unique(group)
-    colours = rainbow(length(gu),start=0.3,end=0.6)
-    pcols = colours[match(group,gu)]
-    nrows = nrow(cmat)
-    mtitle = paste(myTitle,'Heatmap: n contigs =',nrows)
-    if (nrows > nsamp)  {
-               cmat = cmat[c(1:nsamp),]
-               mtitle = paste('Heatmap: Top ',nsamp,' DE contigs (of ',nrows,')',sep='')
-          }
-    newcolnames = substr(colnames(cmat),1,20)
-    colnames(cmat) = newcolnames
-    pdf(outpdfname)
-    heatmap(cmat,scale='row',main=mtitle,cexRow=0.3,cexCol=0.4,Rowv=NA,ColSideColors=pcols)
-    dev.off()
-}
-
-qqPlot = function(descr='qqplot',pvector, outpdf='qqplot.pdf',...)
-# stolen from https://gist.github.com/703512
-{
-    o = -log10(sort(pvector,decreasing=F))
-    e = -log10( 1:length(o)/length(o) )
-    o[o==-Inf] = reallysmall
-    o[o==Inf] = reallybig
-    maint = descr
-    pdf(outpdf)
-    plot(e,o,pch=19,cex=1, main=maint, ...,
-        xlab=expression(Expected~~-log[10](italic(p))),
-        ylab=expression(Observed~~-log[10](italic(p))),
-        xlim=c(0,max(e)), ylim=c(0,max(o)))
-    lines(e,e,col="red")
-    grid(col = "lightgray", lty = "dotted")
-    dev.off()
-}
-
-smearPlot = function(DGEList,deTags, outSmear, outMain)
-        {
-        pdf(outSmear)
-        plotSmear(DGEList,de.tags=deTags,main=outMain)
-        grid(col="lightgray", lty="dotted")
-        dev.off()
-        }
-        
-boxPlot = function(rawrs,cleanrs,maint,myTitle,pdfname)
-{   # 
-        nc = ncol(rawrs)
-        for (i in c(1:nc)) {rawrs[(rawrs[,i] < 0),i] = NA}
-        fullnames = colnames(rawrs)
-        newcolnames = substr(colnames(rawrs),1,20)
-        colnames(rawrs) = newcolnames
-        newcolnames = substr(colnames(cleanrs),1,20)
-        colnames(cleanrs) = newcolnames
-        defpar = par(no.readonly=T)
-        print.noquote('raw contig counts by sample:')
-        print.noquote(summary(rawrs))
-        print.noquote('normalised contig counts by sample:')
-        print.noquote(summary(cleanrs))
-        pdf(pdfname)
-        par(mfrow=c(1,2))
-        boxplot(rawrs,varwidth=T,notch=T,ylab='log contig count',col="maroon",las=3,cex.axis=0.35,main=paste('Raw:',maint))
-        grid(col="lightgray",lty="dotted")
-        boxplot(cleanrs,varwidth=T,notch=T,ylab='log contig count',col="maroon",las=3,cex.axis=0.35,main=paste('After ',maint))
-        grid(col="lightgray",lty="dotted")
-        dev.off()
-        pdfname = "sample_counts_histogram.pdf" 
-        nc = ncol(rawrs)
-        print.noquote(paste('Using ncol rawrs=',nc))
-        ncroot = round(sqrt(nc))
-        if (ncroot*ncroot < nc) { ncroot = ncroot + 1 }
-        m = c()
-        for (i in c(1:nc)) {
-              rhist = hist(rawrs[,i],breaks=100,plot=F)
-              m = append(m,max(rhist\$counts))
-             }
-        ymax = max(m)
-        ncols = length(fullnames)
-        if (ncols > 20) 
-        {
-           scale = 7*ncols/20
-           pdf(pdfname,width=scale,height=scale)
-        } else { 
-           pdf(pdfname)
-        }
-        par(mfrow=c(ncroot,ncroot))
-        for (i in c(1:nc)) {
-                 hist(rawrs[,i], main=paste("Contig logcount",i), xlab='log raw count', col="maroon", 
-                 breaks=100,sub=fullnames[i],cex=0.8,ylim=c(0,ymax))
-             }
-        dev.off()
-        par(defpar)
-      
-}
-
-cumPlot = function(rawrs,cleanrs,maint,myTitle)
-{   # updated to use ecdf
-        pdfname = "Filtering_rowsum_bar_charts.pdf"
-        defpar = par(no.readonly=T)
-        lrs = log(rawrs,10) 
-        lim = max(lrs)
-        pdf(pdfname)
-        par(mfrow=c(2,1))
-        hist(lrs,breaks=100,main=paste('Before:',maint),xlab="# Reads (log)",
-             ylab="Count",col="maroon",sub=myTitle, xlim=c(0,lim),las=1)
-        grid(col="lightgray", lty="dotted")
-        lrs = log(cleanrs,10) 
-        hist(lrs,breaks=100,main=paste('After:',maint),xlab="# Reads (log)",
-             ylab="Count",col="maroon",sub=myTitle,xlim=c(0,lim),las=1)
-        grid(col="lightgray", lty="dotted")
-        dev.off()
-        par(defpar)
-}
-
-cumPlot1 = function(rawrs,cleanrs,maint,myTitle)
-{   # updated to use ecdf
-        pdfname = paste(gsub(" ","", myTitle , fixed=TRUE),"RowsumCum.pdf",sep='_')
-        pdf(pdfname)
-        par(mfrow=c(2,1))
-        lastx = max(rawrs)
-        rawe = knots(ecdf(rawrs))
-        cleane = knots(ecdf(cleanrs))
-        cy = 1:length(cleane)/length(cleane)
-        ry = 1:length(rawe)/length(rawe)
-        plot(rawe,ry,type='l',main=paste('Before',maint),xlab="Log Contig Total Reads",
-             ylab="Cumulative proportion",col="maroon",log='x',xlim=c(1,lastx),sub=myTitle)
-        grid(col="blue")
-        plot(cleane,cy,type='l',main=paste('After',maint),xlab="Log Contig Total Reads",
-             ylab="Cumulative proportion",col="maroon",log='x',xlim=c(1,lastx),sub=myTitle)
-        grid(col="blue")
-        dev.off()
-}
-
-
-
-doGSEAold = function(y=NULL,design=NULL,histgmt="",
-                  bigmt="/data/genomes/gsea/3.1/Abetterchoice_nocgp_c2_c3_c5_symbols_all.gmt",
-                  ntest=0, myTitle="myTitle", outfname="GSEA.xls", minnin=5, maxnin=2000,fdrthresh=0.05,fdrtype="BH")
-{
-  sink('Camera.log')
-  genesets = c()
-  if (bigmt > "")
-  {
-    bigenesets = readLines(bigmt)
-    genesets = bigenesets
-  }
-  if (histgmt > "")
-  {
-    hgenesets = readLines(histgmt)
-    if (bigmt > "") {
-      genesets = rbind(genesets,hgenesets)
-    } else {
-      genesets = hgenesets
-    } # use only history if no bi
-  }
-  print.noquote(paste("@@@read",length(genesets), 'genesets from',histgmt,bigmt))
-  genesets = strsplit(genesets,'\t') # tabular. genesetid\tURLorwhatever\tgene_1\t..\tgene_n
-  outf = outfname
-  head=paste(myTitle,'edgeR GSEA')
-  write(head,file=outfname,append=F)
-  ntest=length(genesets)
-  urownames = toupper(rownames(y))
-  upcam = c()
-  downcam = c()
-  for (i in 1:ntest) {
-    gs = unlist(genesets[i])
-    g = gs[1] # geneset_id
-    u = gs[2]
-    if (u > "") { u = paste("<a href=\'",u,"\'>",u,"</a>",sep="") }
-    glist = gs[3:length(gs)] # member gene symbols
-    glist = toupper(glist)
-    inglist = urownames %in% glist
-    nin = sum(inglist)
-    if ((nin > minnin) && (nin < maxnin)) {
-      ### print(paste('@@found',sum(inglist),'genes in glist'))
-      camres = camera(y=y,index=inglist,design=design)
-      if (! is.null(camres)) {
-      rownames(camres) = g # gene set name
-      camres = cbind(GeneSet=g,URL=u,camres)
-      if (camres\$Direction == "Up") 
-        {
-        upcam = rbind(upcam,camres) } else {
-          downcam = rbind(downcam,camres)
-        }
-      }
-   }
-  }
-  uscam = upcam[order(upcam\$PValue),]
-  unadjp = uscam\$PValue
-  uscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  nup = max(10,sum((uscam\$adjPValue < fdrthresh)))
-  dscam = downcam[order(downcam\$PValue),]
-  unadjp = dscam\$PValue
-  dscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  ndown = max(10,sum((dscam\$adjPValue < fdrthresh)))
-  write.table(uscam,file=paste('camera_up',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  write.table(dscam,file=paste('camera_down',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera up top',nup,'gene sets:'))
-  write.table(head(uscam,nup),file="",quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera down top',ndown,'gene sets:'))
-  write.table(head(dscam,ndown),file="",quote=F,sep='\t',row.names=F)
-  sink()
-}
-
-
-
-
-doGSEA = function(y=NULL,design=NULL,histgmt="",
-                  bigmt="/data/genomes/gsea/3.1/Abetterchoice_nocgp_c2_c3_c5_symbols_all.gmt",
-                  ntest=0, myTitle="myTitle", outfname="GSEA.xls", minnin=5, maxnin=2000,fdrthresh=0.05,fdrtype="BH")
-{
-  sink('Camera.log')
-  genesets = c()
-  if (bigmt > "")
-  {
-    bigenesets = readLines(bigmt)
-    genesets = bigenesets
-  }
-  if (histgmt > "")
-  {
-    hgenesets = readLines(histgmt)
-    if (bigmt > "") {
-      genesets = rbind(genesets,hgenesets)
-    } else {
-      genesets = hgenesets
-    } # use only history if no bi
-  }
-  print.noquote(paste("@@@read",length(genesets), 'genesets from',histgmt,bigmt))
-  genesets = strsplit(genesets,'\t') # tabular. genesetid\tURLorwhatever\tgene_1\t..\tgene_n
-  outf = outfname
-  head=paste(myTitle,'edgeR GSEA')
-  write(head,file=outfname,append=F)
-  ntest=length(genesets)
-  urownames = toupper(rownames(y))
-  upcam = c()
-  downcam = c()
-  incam = c()
-  urls = c()
-  gsids = c()
-  for (i in 1:ntest) {
-    gs = unlist(genesets[i])
-    gsid = gs[1] # geneset_id
-    url = gs[2]
-    if (url > "") { url = paste("<a href=\'",url,"\'>",url,"</a>",sep="") }
-    glist = gs[3:length(gs)] # member gene symbols
-    glist = toupper(glist)
-    inglist = urownames %in% glist
-    nin = sum(inglist)
-    if ((nin > minnin) && (nin < maxnin)) {
-      incam = c(incam,inglist)
-      gsids = c(gsids,gsid)
-      urls = c(urls,url)
-    }
-  }
-  incam = as.list(incam)
-  names(incam) = gsids
-  allcam = camera(y=y,index=incam,design=design)
-  allcamres = cbind(geneset=gsids,allcam,URL=urls)
-  for (i in 1:ntest) {
-    camres = allcamres[i]
-    res = try(test = (camres\$Direction == "Up"))
-    if ("try-error" %in% class(res)) {
-      cat("test failed, camres = :")
-      print.noquote(camres)
-    } else  { if (camres\$Direction == "Up")
-    {  upcam = rbind(upcam,camres)
-    } else { downcam = rbind(downcam,camres)
-    }
-              
-    }
-  }
-  uscam = upcam[order(upcam\$PValue),]
-  unadjp = uscam\$PValue
-  uscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  nup = max(10,sum((uscam\$adjPValue < fdrthresh)))
-  dscam = downcam[order(downcam\$PValue),]
-  unadjp = dscam\$PValue
-  dscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  ndown = max(10,sum((dscam\$adjPValue < fdrthresh)))
-  write.table(uscam,file=paste('camera_up',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  write.table(dscam,file=paste('camera_down',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera up top',nup,'gene sets:'))
-  write.table(head(uscam,nup),file="",quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera down top',ndown,'gene sets:'))
-  write.table(head(dscam,ndown),file="",quote=F,sep='\t',row.names=F)
-  sink()
-  }
- 
-
-edgeIt = function (Count_Matrix=c(),group=c(),out_edgeR=F,out_VOOM=F,out_DESeq2=F,fdrtype='fdr',priordf=5, 
-        fdrthresh=0.05,outputdir='.', myTitle='Differential Counts',libSize=c(),useNDF=F,
-        filterquantile=0.2, subjects=c(),mydesign=NULL,
-        doDESeq2=T,doVoom=T,doCamera=T,doedgeR=T,org='hg19',
-        histgmt="", bigmt="/data/genomes/gsea/3.1/Abetterchoice_nocgp_c2_c3_c5_symbols_all.gmt",
-        doCook=F,DESeq_fitType="parameteric") 
-{
-  # Error handling
-  if (length(unique(group))!=2){
-    print("Number of conditions identified in experiment does not equal 2")
-    q()
-    }
-  require(edgeR)
-  options(width = 512) 
-  mt = paste(unlist(strsplit(myTitle,'_')),collapse=" ")
-  allN = nrow(Count_Matrix)
-  nscut = round(ncol(Count_Matrix)/2)
-  colTotmillionreads = colSums(Count_Matrix)/1e6
-  counts.dataframe = as.data.frame(c()) 
-  rawrs = rowSums(Count_Matrix)
-  nonzerod = Count_Matrix[(rawrs > 0),] # remove all zero count genes
-  nzN = nrow(nonzerod)
-  nzrs = rowSums(nonzerod)
-  zN = allN - nzN
-  print('# Quantiles for non-zero row counts:',quote=F)
-  print(quantile(nzrs,probs=seq(0,1,0.1)),quote=F)
-  if (useNDF == T)
-  {
-    gt1rpin3 = rowSums(Count_Matrix/expandAsMatrix(colTotmillionreads,dim(Count_Matrix)) >= 1) >= nscut
-    lo = colSums(Count_Matrix[!gt1rpin3,])
-    workCM = Count_Matrix[gt1rpin3,]
-    cleanrs = rowSums(workCM)
-    cleanN = length(cleanrs)
-    meth = paste( "After removing",length(lo),"contigs with fewer than ",nscut," sample read counts >= 1 per million, there are",sep="")
-    print(paste("Read",allN,"contigs. Removed",zN,"contigs with no reads.",meth,cleanN,"contigs"),quote=F)
-    maint = paste('Filter >=1/million reads in >=',nscut,'samples')
-  }   else {        
-    useme = (nzrs > quantile(nzrs,filterquantile))
-    workCM = nonzerod[useme,]
-    lo = colSums(nonzerod[!useme,])
-    cleanrs = rowSums(workCM)
-    cleanN = length(cleanrs)
-    meth = paste("After filtering at count quantile =",filterquantile,", there are",sep="")
-    print(paste('Read',allN,"contigs. Removed",zN,"with no reads.",meth,cleanN,"contigs"),quote=F)
-    maint = paste('Filter below',filterquantile,'quantile')
-  }
-  cumPlot(rawrs=rawrs,cleanrs=cleanrs,maint=maint,myTitle=myTitle)
-  allgenes = rownames(workCM)
-  reg = "^chr([0-9]+):([0-9]+)-([0-9]+)"
-  genecards="<a href=\'http://www.genecards.org/index.php?path=/Search/keyword/"
-  ucsc = paste("<a href=\'http://genome.ucsc.edu/cgi-bin/hgTracks?db=",org,sep='')
-  testreg = str_match(allgenes,reg)
-  if (sum(!is.na(testreg[,1]))/length(testreg[,1]) > 0.8) # is ucsc style string
-  {
-    print("@@ using ucsc substitution for urls")
-    contigurls = paste0(ucsc,"&amp;position=chr",testreg[,2],":",testreg[,3],"-",testreg[,4],"\'>",allgenes,"</a>")
-  } else {
-    print("@@ using genecards substitution for urls")
-    contigurls = paste0(genecards,allgenes,"\'>",allgenes,"</a>")
-  }
-  print.noquote("# urls")
-  print.noquote(head(contigurls))
-  print(paste("# Total low count contigs per sample = ",paste(lo,collapse=',')),quote=F) 
-  cmrowsums = rowSums(workCM)
-  TName=unique(group)[1]
-  CName=unique(group)[2]
-  if (is.null(mydesign)) {
-    if (length(subjects) == 0) 
-    {
-      mydesign = model.matrix(~group)
-    } 
-    else { 
-      subjf = factor(subjects)
-      mydesign = model.matrix(~subjf+group) # we block on subject so make group last to simplify finding it
-    }
-  } 
-  print.noquote(paste('Using samples:',paste(colnames(workCM),collapse=',')))
-  print.noquote('Using design matrix:')
-  print.noquote(mydesign)
-  if (doedgeR) {
-  sink('edgeR.log')
-  #### Setup DGEList object
-  DGEList = DGEList(counts=workCM, group = group)
-  DGEList = calcNormFactors(DGEList)
-
-  DGEList = estimateGLMCommonDisp(DGEList,mydesign)
-  comdisp = DGEList\$common.dispersion
-  DGEList = estimateGLMTrendedDisp(DGEList,mydesign)
-  if (edgeR_priordf > 0) {
-    print.noquote(paste("prior.df =",edgeR_priordf))
-    DGEList = estimateGLMTagwiseDisp(DGEList,mydesign,prior.df = edgeR_priordf)
-  } else {
-    DGEList = estimateGLMTagwiseDisp(DGEList,mydesign)
-  }
-  DGLM = glmFit(DGEList,design=mydesign)
-  DE = glmLRT(DGLM,coef=ncol(DGLM\$design)) # always last one - subject is first if needed
-  efflib = DGEList\$samples\$lib.size*DGEList\$samples\$norm.factors
-  normData = (1e+06*DGEList\$counts/efflib)
-  uoutput = cbind( 
-    Name=as.character(rownames(DGEList\$counts)),
-    DE\$table,
-    adj.p.value=p.adjust(DE\$table\$PValue, method=fdrtype),
-    Dispersion=DGEList\$tagwise.dispersion,totreads=cmrowsums,normData,
-    DGEList\$counts
-  )
-  soutput = uoutput[order(DE\$table\$PValue),] # sorted into p value order - for quick toptable
-  goodness = gof(DGLM, pcutoff=fdrthresh)
-  if (sum(goodness\$outlier) > 0) {
-    print.noquote('GLM outliers:')
-    print(paste(rownames(DGLM)[(goodness\$outlier)],collapse=','),quote=F)
-    } else { 
-      print('No GLM fit outlier genes found\n')
-    }
-  z = limma::zscoreGamma(goodness\$gof.statistic, shape=goodness\$df/2, scale=2)
-  pdf("edgeR_GoodnessofFit.pdf")
-  qq = qqnorm(z, panel.first=grid(), main="tagwise dispersion")
-  abline(0,1,lwd=3)
-  points(qq\$x[goodness\$outlier],qq\$y[goodness\$outlier], pch=16, col="maroon")
-  dev.off()
-  estpriorn = getPriorN(DGEList)
-  print(paste("Common Dispersion =",comdisp,"CV = ",sqrt(comdisp),"getPriorN = ",estpriorn),quote=F)
-  efflib = DGEList\$samples\$lib.size*DGEList\$samples\$norm.factors
-  normData = (1e+06*DGEList\$counts/efflib)
-  uniqueg = unique(group)
-  #### Plot MDS
-  sample_colors =  match(group,levels(group))
-  sampleTypes = levels(factor(group))
-  print.noquote(sampleTypes)
-  pdf("edgeR_MDSplot.pdf")
-  plotMDS.DGEList(DGEList,main=paste("edgeR MDS for",myTitle),cex=0.5,col=sample_colors,pch=sample_colors)
-  legend(x="topleft", legend = sampleTypes,col=c(1:length(sampleTypes)), pch=19)
-  grid(col="blue")
-  dev.off()
-  colnames(normData) = paste( colnames(normData),'N',sep="_")
-  print(paste('Raw sample read totals',paste(colSums(nonzerod,na.rm=T),collapse=',')))
-  nzd = data.frame(log(nonzerod + 1e-2,10))
-  try( boxPlot(rawrs=nzd,cleanrs=log(normData,10),maint='TMM Normalisation',myTitle=myTitle,pdfname="edgeR_raw_norm_counts_box.pdf") )
-  write.table(soutput,file=out_edgeR, quote=FALSE, sep="\t",row.names=F)
-  tt = cbind( 
-    Name=as.character(rownames(DGEList\$counts)),
-    DE\$table,
-    adj.p.value=p.adjust(DE\$table\$PValue, method=fdrtype),
-    Dispersion=DGEList\$tagwise.dispersion,totreads=cmrowsums
-  )
-  print.noquote("# edgeR Top tags\n")
-  tt = cbind(tt,URL=contigurls) # add to end so table isn't laid out strangely
-  tt = tt[order(DE\$table\$PValue),] 
-  print.noquote(tt[1:50,])
-  deTags = rownames(uoutput[uoutput\$adj.p.value < fdrthresh,])
-  nsig = length(deTags)
-  print(paste('#',nsig,'tags significant at adj p=',fdrthresh),quote=F)
-  deColours = ifelse(deTags,'red','black')
-  pdf("edgeR_BCV_vs_abundance.pdf")
-  plotBCV(DGEList, cex=0.3, main="Biological CV vs abundance")
-  dev.off()
-  dg = DGEList[order(DE\$table\$PValue),]
-  #normData = (1e+06 * dg\$counts/expandAsMatrix(dg\$samples\$lib.size, dim(dg)))
-  efflib = dg\$samples\$lib.size*dg\$samples\$norm.factors
-  normData = (1e+06*dg\$counts/efflib)
-  outpdfname="edgeR_top_100_heatmap.pdf"
-  hmap2(normData,nsamp=100,TName=TName,group=group,outpdfname=outpdfname,myTitle=paste('edgeR Heatmap',myTitle))
-  outSmear = "edgeR_smearplot.pdf"
-  outMain = paste("Smear Plot for ",TName,' Vs ',CName,' (FDR@',fdrthresh,' N = ',nsig,')',sep='')
-  smearPlot(DGEList=DGEList,deTags=deTags, outSmear=outSmear, outMain = outMain)
-  qqPlot(descr=paste(myTitle,'edgeR adj p QQ plot'),pvector=tt\$adj.p.value,outpdf='edgeR_qqplot.pdf')
-  norm.factor = DGEList\$samples\$norm.factors
-  topresults.edgeR = soutput[which(soutput\$adj.p.value < fdrthresh), ]
-  edgeRcountsindex = which(allgenes %in% rownames(topresults.edgeR))
-  edgeRcounts = rep(0, length(allgenes))
-  edgeRcounts[edgeRcountsindex] = 1  # Create venn diagram of hits
-  sink()
-  } ### doedgeR
-  if (doDESeq2 == T)
-  {
-    sink("DESeq2.log")
-    # DESeq2
-    require('DESeq2')
-    library('RColorBrewer')
-    if (length(subjects) == 0)
-        {
-        pdata = data.frame(Name=colnames(workCM),Rx=group,row.names=colnames(workCM))
-        deSEQds = DESeqDataSetFromMatrix(countData = workCM,  colData = pdata, design = formula(~ Rx))
-        } else {
-        pdata = data.frame(Name=colnames(workCM),Rx=group,subjects=subjects,row.names=colnames(workCM))
-        deSEQds = DESeqDataSetFromMatrix(countData = workCM,  colData = pdata, design = formula(~ subjects + Rx))
-        }
-    #DESeq2 = DESeq(deSEQds,fitType='local',pAdjustMethod=fdrtype)
-    #rDESeq = results(DESeq2)
-    #newCountDataSet(workCM, group)
-    deSeqDatsizefac = estimateSizeFactors(deSEQds)
-    deSeqDatdisp = estimateDispersions(deSeqDatsizefac,fitType=DESeq_fitType)
-    resDESeq = nbinomWaldTest(deSeqDatdisp, pAdjustMethod=fdrtype)
-    rDESeq = as.data.frame(results(resDESeq))
-    rDESeq = cbind(Contig=rownames(workCM),rDESeq,NReads=cmrowsums,URL=contigurls)
-    srDESeq = rDESeq[order(rDESeq\$pvalue),]
-    qqPlot(descr=paste(myTitle,'DESeq2 adj p qq plot'),pvector=rDESeq\$padj,outpdf='DESeq2_qqplot.pdf')
-    cat("# DESeq top 50\n")
-    print.noquote(srDESeq[1:50,])
-    write.table(srDESeq,file=out_DESeq2, quote=FALSE, sep="\t",row.names=F)
-    topresults.DESeq = rDESeq[which(rDESeq\$padj < fdrthresh), ]
-    DESeqcountsindex = which(allgenes %in% rownames(topresults.DESeq))
-    DESeqcounts = rep(0, length(allgenes))
-    DESeqcounts[DESeqcountsindex] = 1
-    pdf("DESeq2_dispersion_estimates.pdf")
-    plotDispEsts(resDESeq)
-    dev.off()
-    ysmall = abs(min(rDESeq\$log2FoldChange))
-    ybig = abs(max(rDESeq\$log2FoldChange))
-    ylimit = min(4,ysmall,ybig)
-    pdf("DESeq2_MA_plot.pdf")
-    plotMA(resDESeq,main=paste(myTitle,"DESeq2 MA plot"),ylim=c(-ylimit,ylimit))
-    dev.off()
-    rlogres = rlogTransformation(resDESeq)
-    sampledists = dist( t( assay(rlogres) ) )
-    sdmat = as.matrix(sampledists)
-    pdf("DESeq2_sample_distance_plot.pdf")
-    heatmap.2(sdmat,trace="none",main=paste(myTitle,"DESeq2 sample distances"),
-         col = colorRampPalette( rev(brewer.pal(9, "RdBu")) )(255))
-    dev.off()
-    ###outpdfname="DESeq2_top50_heatmap.pdf"
-    ###hmap2(sresDESeq,nsamp=50,TName=TName,group=group,outpdfname=outpdfname,myTitle=paste('DESeq2 vst rlog Heatmap',myTitle))
-    sink()
-    result = try( (ppca = plotPCA( varianceStabilizingTransformation(deSeqDatdisp,blind=T), intgroup=c("Rx","Name")) ) )
-    if ("try-error" %in% class(result)) {
-         print.noquote('DESeq2 plotPCA failed.')
-         } else {
-         pdf("DESeq2_PCA_plot.pdf")
-         #### wtf - print? Seems needed to get this to work
-         print(ppca)
-         dev.off()
-        }
-  }
-
-  if (doVoom == T) {
-      sink('VOOM.log')
-      if (doedgeR == F) {
-         #### Setup DGEList object
-         DGEList = DGEList(counts=workCM, group = group)
-         DGEList = calcNormFactors(DGEList)
-         DGEList = estimateGLMCommonDisp(DGEList,mydesign)
-         DGEList = estimateGLMTrendedDisp(DGEList,mydesign)
-         DGEList = estimateGLMTagwiseDisp(DGEList,mydesign)
-         DGEList = estimateGLMTagwiseDisp(DGEList,mydesign)
-         norm.factor = DGEList\$samples\$norm.factors
-         }
-      pdf("VOOM_mean_variance_plot.pdf")
-      dat.voomed = voom(DGEList, mydesign, plot = TRUE, lib.size = colSums(workCM) * norm.factor)
-      dev.off()
-      # Use limma to fit data
-      fit = lmFit(dat.voomed, mydesign)
-      fit = eBayes(fit)
-      rvoom = topTable(fit, coef = length(colnames(mydesign)), adj = fdrtype, n = Inf, sort="none")
-      qqPlot(descr=paste(myTitle,'VOOM-limma adj p QQ plot'),pvector=rvoom\$adj.P.Val,outpdf='VOOM_qqplot.pdf')
-      rownames(rvoom) = rownames(workCM)
-      rvoom = cbind(rvoom,NReads=cmrowsums,URL=contigurls)
-      srvoom = rvoom[order(rvoom\$P.Value),]
-      cat("# VOOM top 50\n")
-      print(srvoom[1:50,])
-      write.table(srvoom,file=out_VOOM, quote=FALSE, sep="\t",row.names=F)
-      # Use an FDR cutoff to find interesting samples for edgeR, DESeq and voom/limma
-      topresults.voom = rvoom[which(rvoom\$adj.P.Val < fdrthresh), ]
-      voomcountsindex = which(allgenes %in% topresults.voom\$ID)
-      voomcounts = rep(0, length(allgenes))
-      voomcounts[voomcountsindex] = 1
-      sink()
-  }
-
-  if (doCamera) {
-  doGSEA(y=DGEList,design=mydesign,histgmt=histgmt,bigmt=bigmt,ntest=20,myTitle=myTitle,
-    outfname=paste(mt,"GSEA.xls",sep="_"),fdrthresh=fdrthresh,fdrtype=fdrtype)
-  }
-
-  if ((doDESeq2==T) || (doVoom==T) || (doedgeR==T)) {
-    if ((doVoom==T) && (doDESeq2==T) && (doedgeR==T)) {
-        vennmain = paste(mt,'Voom,edgeR and DESeq2 overlap at FDR=',fdrthresh)
-        counts.dataframe = data.frame(edgeR = edgeRcounts, DESeq2 = DESeqcounts, 
-                                       VOOM_limma = voomcounts, row.names = allgenes)
-       } else if ((doDESeq2==T) && (doedgeR==T))  {
-         vennmain = paste(mt,'DESeq2 and edgeR overlap at FDR=',fdrthresh)
-         counts.dataframe = data.frame(edgeR = edgeRcounts, DESeq2 = DESeqcounts, row.names = allgenes)
-       } else if ((doVoom==T) && (doedgeR==T)) {
-        vennmain = paste(mt,'Voom and edgeR overlap at FDR=',fdrthresh)
-        counts.dataframe = data.frame(edgeR = edgeRcounts, VOOM_limma = voomcounts, row.names = allgenes)
-       }
-    
-    if (nrow(counts.dataframe > 1)) {
-      counts.venn = vennCounts(counts.dataframe)
-      vennf = "Venn_significant_genes_overlap.pdf" 
-      pdf(vennf)
-      vennDiagram(counts.venn,main=vennmain,col="maroon")
-      dev.off()
-    }
-  } #### doDESeq2 or doVoom
-  
-}
-#### Done
-
-###sink(stdout(),append=T,type="message")
-builtin_gmt = ""
-history_gmt = ""
-history_gmt_name = ""
-out_edgeR = F
-out_DESeq2 = F
-out_VOOM = "$out_VOOM"
-doDESeq2 = $DESeq2.doDESeq2 # make these T or F
-doVoom = $doVoom
-doCamera = F
-doedgeR = $edgeR.doedgeR
-edgeR_priordf = 0
-
-
-#if $doVoom == "T":
-  out_VOOM = "$out_VOOM"
-#end if
-
-#if $DESeq2.doDESeq2 == "T":
-  out_DESeq2 = "$out_DESeq2"
-  DESeq_fitType = "$DESeq2.DESeq_fitType"
-#end if
-
-#if $edgeR.doedgeR == "T":
-  out_edgeR = "$out_edgeR"
-  edgeR_priordf = $edgeR.edgeR_priordf  
-#end if
-
-<!--
-#if $camera.doCamera == 'T'
- doCamera = $camera.doCamera
- #if $camera.gmtSource.refgmtSource == "indexed" or $camera.gmtSource.refgmtSource == "both":
-  builtin_gmt = "${camera.gmtSource.builtinGMT.fields.path}"
- #end if
- #if $camera.gmtSource.refgmtSource == "history" or $camera.gmtSource.refgmtSource == "both":
-    history_gmt = "${camera.gmtSource.ownGMT}"
-    history_gmt_name = "${camera.gmtSource.ownGMT.name}"
-  #end if
-#end if
--->
-
-if (sum(c(doedgeR,doVoom,doDESeq2)) == 0)
-{
-write("No methods chosen - nothing to do! Please try again after choosing one or more methods", stderr())
-quit(save="no",status=2)
-}
-
-Out_Dir = "$html_file.files_path"
-Input =  "$input1"
-TreatmentName = "$treatment_name"
-TreatmentCols = "$Treat_cols"
-ControlName = "$control_name"
-ControlCols= "$Control_cols"
-org = "$input1.dbkey"
-if (org == "") { org = "hg19"}
-fdrtype = "$fdrtype"
-fdrthresh = $fdrthresh
-useNDF = $useNDF
-fQ = $fQ # non-differential centile cutoff
-myTitle = "$title"
-sids = strsplit("$subjectids",',')
-subjects = unlist(sids)
-nsubj = length(subjects)
-TCols = as.numeric(strsplit(TreatmentCols,",")[[1]])-1
-CCols = as.numeric(strsplit(ControlCols,",")[[1]])-1 
-cat('Got TCols=')
-cat(TCols)
-cat('; CCols=')
-cat(CCols)
-cat('\n')
-useCols = c(TCols,CCols)
-if (file.exists(Out_Dir) == F) dir.create(Out_Dir)
-Count_Matrix = read.table(Input,header=T,row.names=1,sep='\t') #Load tab file assume header
-snames = colnames(Count_Matrix)
-nsamples = length(snames)
-if (nsubj >  0 & nsubj != nsamples) {
-options("show.error.messages"=T)
-mess = paste('Fatal error: Supplied subject id list',paste(subjects,collapse=','),
-   'has length',nsubj,'but there are',nsamples,'samples',paste(snames,collapse=','))
-write(mess, stderr())
-quit(save="no",status=4)
-}
-if (length(subjects) != 0) {subjects = subjects[useCols]}
-Count_Matrix = Count_Matrix[,useCols] ### reorder columns
-rn = rownames(Count_Matrix)
-islib = rn %in% c('librarySize','NotInBedRegions')
-LibSizes = Count_Matrix[subset(rn,islib),][1] # take first
-Count_Matrix = Count_Matrix[subset(rn,! islib),]
-group = c(rep(TreatmentName,length(TCols)), rep(ControlName,length(CCols)) )             #Build a group descriptor
-group = factor(group, levels=c(ControlName,TreatmentName))
-colnames(Count_Matrix) = paste(group,colnames(Count_Matrix),sep="_")                   #Relable columns
-results = edgeIt(Count_Matrix=Count_Matrix,group=group, out_edgeR=out_edgeR, out_VOOM=out_VOOM, out_DESeq2=out_DESeq2,
-                 fdrtype='BH',mydesign=NULL,priordf=edgeR_priordf,fdrthresh=fdrthresh,outputdir='.',
-                 myTitle=myTitle,useNDF=F,libSize=c(),filterquantile=fQ,subjects=subjects,
-                 doDESeq2=doDESeq2,doVoom=doVoom,doCamera=doCamera,doedgeR=doedgeR,org=org,
-                 histgmt=history_gmt,bigmt=builtin_gmt,DESeq_fitType=DESeq_fitType)
-sessionInfo()
-]]>
-</configfile>
-</configfiles>
-<help>
-
-**What it does**
-
-Allows short read sequence counts from controlled experiments to be analysed for differentially expressed genes.
-Optionally adds a term for subject if not all samples are independent or if some other factor needs to be blocked in the design.
-
-**Input**
-
-Requires a count matrix as a tabular file. These are best made using the companion HTSeq_ based counter Galaxy wrapper
-and your fave gene model to generate inputs. Each row is a genomic feature (gene or exon eg) and each column the 
-non-negative integer count of reads from one sample overlapping the feature. 
-The matrix must have a header row uniquely identifying the source samples, and unique row names in 
-the first column. Typically the row names are gene symbols or probe ids for downstream use in GSEA and other methods.
-
-**Specifying comparisons**
-
-This is basically dumbed down for two factors - case vs control.
-
-More complex interfaces are possible but painful at present. 
-Probably need to specify a phenotype file to do this better.
-Work in progress. Send code.
-
-If you have (eg) paired samples and wish to include a term in the GLM to account for some other factor (subject in the case of paired samples),
-put a comma separated list of indicators for every sample (whether modelled or not!) indicating (eg) the subject number or 
-A list of integers, one for each subject or an empty string if samples are all independent.
-If not empty, there must be exactly as many integers in the supplied integer list as there are columns (samples) in the count matrix.
-Integers for samples that are not in the analysis *must* be present in the string as filler even if not used.
-
-So if you have 2 pairs out of 6 samples, you need to put in unique integers for the unpaired ones
-eg if you had 6 samples with the first two independent but the second and third pairs each being from independent subjects. you might use
-8,9,1,1,2,2 
-as subject IDs to indicate two paired samples from the same subject in columns 3/4 and 5/6
-
-**Methods available**
-
-You can run 3 popular Bioconductor packages available for count data.
-
-edgeR - see edgeR_ for details
-
-VOOM/limma - see limma_VOOM_ for details
-
-DESeq2 - see DESeq2_ for details
-
-and optionally camera in edgeR which works better if MSigDB is installed.
-
-**Outputs**
-
-Some helpful plots and analysis results. Note that most of these are produced using R code 
-suggested by the excellent documentation and vignettes for the Bioconductor
-packages invoked. The Tool Factory is used to automatically lay these out for you to enjoy.
-
-**Note on Voom**
-
-The voom from limma version 3.16.6 help in R includes this from the authors - but you should read the paper to interpret this method.
-
-This function is intended to process RNA-Seq or ChIP-Seq data prior to linear modelling in limma.
-
-voom is an acronym for mean-variance modelling at the observational level.
-The key concern is to estimate the mean-variance relationship in the data, then use this to compute appropriate weights for each observation.
-Count data almost show non-trivial mean-variance relationships. Raw counts show increasing variance with increasing count size, while log-counts typically show a decreasing mean-variance trend.
-This function estimates the mean-variance trend for log-counts, then assigns a weight to each observation based on its predicted variance.
-The weights are then used in the linear modelling process to adjust for heteroscedasticity.
-
-In an experiment, a count value is observed for each tag in each sample. A tag-wise mean-variance trend is computed using lowess.
-The tag-wise mean is the mean log2 count with an offset of 0.5, across samples for a given tag.
-The tag-wise variance is the quarter-root-variance of normalized log2 counts per million values with an offset of 0.5, across samples for a given tag.
-Tags with zero counts across all samples are not included in the lowess fit. Optional normalization is performed using normalizeBetweenArrays.
-Using fitted values of log2 counts from a linear model fit by lmFit, variances from the mean-variance trend were interpolated for each observation.
-This was carried out by approxfun. Inverse variance weights can be used to correct for mean-variance trend in the count data.
-
-
-Author(s)
-
-Charity Law and Gordon Smyth
-
-References
-
-Law, CW (2013). Precision weights for gene expression analysis. PhD Thesis. University of Melbourne, Australia.
-
-Law, CW, Chen, Y, Shi, W, Smyth, GK (2013). Voom! Precision weights unlock linear model analysis tools for RNA-seq read counts.
-Technical Report 1 May 2013, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Reseach, Melbourne, Australia.
-http://www.statsci.org/smyth/pubs/VoomPreprint.pdf
-
-See Also
-
-A voom case study is given in the edgeR User's Guide.
-
-vooma is a similar function but for microarrays instead of RNA-seq.
-
-
-***old rant on changes to Bioconductor package variable names between versions***
-
-The edgeR authors made a small cosmetic change in the name of one important variable (from p.value to PValue) 
-breaking this and all other code that assumed the old name for this variable, 
-between edgeR2.4.4 and 2.4.6 (the version for R 2.14 as at the time of writing). 
-This means that all code using edgeR is sensitive to the version. I think this was a very unwise thing 
-to do because it wasted hours of my time to track down and will similarly cost other edgeR users dearly
-when their old scripts break. This tool currently now works with 2.4.6.
-
-**Note on prior.N**
-
-http://seqanswers.com/forums/showthread.php?t=5591 says:
-
-*prior.n*
-
-The value for prior.n determines the amount of smoothing of tagwise dispersions towards the common dispersion. 
-You can think of it as like a "weight" for the common value. (It is actually the weight for the common likelihood 
-in the weighted likelihood equation). The larger the value for prior.n, the more smoothing, i.e. the closer your 
-tagwise dispersion estimates will be to the common dispersion. If you use a prior.n of 1, then that gives the 
-common likelihood the weight of one observation.
-
-In answer to your question, it is a good thing to squeeze the tagwise dispersions towards a common value, 
-or else you will be using very unreliable estimates of the dispersion. I would not recommend using the value that 
-you obtained from estimateSmoothing()---this is far too small and would result in virtually no moderation 
-(squeezing) of the tagwise dispersions. How many samples do you have in your experiment? 
-What is the experimental design? If you have few samples (less than 6) then I would suggest a prior.n of at least 10. 
-If you have more samples, then the tagwise dispersion estimates will be more reliable, 
-so you could consider using a smaller prior.n, although I would hesitate to use a prior.n less than 5. 
-
-
-From Bioconductor Digest, Vol 118, Issue 5, Gordon writes:
-
-Dear Dorota,
-
-The important settings are prior.df and trend.
-
-prior.n and prior.df are related through prior.df = prior.n * residual.df,
-and your experiment has residual.df = 36 - 12 = 24.  So the old setting of
-prior.n=10 is equivalent for your data to prior.df = 240, a very large
-value.  Going the other way, the new setting of prior.df=10 is equivalent
-to prior.n=10/24.
-
-To recover old results with the current software you would use
-
-  estimateTagwiseDisp(object, prior.df=240, trend="none")
-
-To get the new default from old software you would use
-
-  estimateTagwiseDisp(object, prior.n=10/24, trend=TRUE)
-
-Actually the old trend method is equivalent to trend="loess" in the new
-software. You should use plotBCV(object) to see whether a trend is
-required.
-
-Note you could also use
-
-  prior.n = getPriorN(object, prior.df=10)
-
-to map between prior.df and prior.n.
-
-----
-
-**Attributions**
-
-edgeR - edgeR_ 
-
-VOOM/limma - limma_VOOM_ 
-
-DESeq2 - DESeq2_ for details
-
-See above for Bioconductor package documentation for packages exposed in Galaxy by this tool and app store package.
-
-Galaxy_ (that's what you are using right now!) for gluing everything together 
-
-Otherwise, all code and documentation comprising this tool was written by Ross Lazarus and is 
-licensed to you under the LGPL_ like other rgenetics artefacts
-
-.. _LGPL: http://www.gnu.org/copyleft/lesser.html
-.. _HTSeq: http://www-huber.embl.de/users/anders/HTSeq/doc/index.html
-.. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
-.. _DESeq2: http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
-.. _limma_VOOM: http://www.bioconductor.org/packages/release/bioc/html/limma.html
-.. _Galaxy: http://getgalaxy.org
-</help>
-
-</tool>
-
-

--- a/rgedgeRpaired_nocamera.xml	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1085 +0,0 @@
-<tool id="rgDifferentialCount" name="Differential_Count" version="0.24">
-  <description>models using BioConductor packages</description>
-  <requirements>
-      <requirement type="package" version="2.14">biocbasics</requirement>
-      <requirement type="package" version="3.0.3">r303</requirement>
-      <requirement type="package" version="1.3.18">graphicsmagick</requirement>
-      <requirement type="package" version="9.07">ghostscript</requirement>
-  </requirements>
-  
-  <command interpreter="python">
-     rgToolFactory.py --script_path "$runme" --interpreter "Rscript" --tool_name "DifferentialCounts" 
-    --output_dir "$html_file.files_path" --output_html "$html_file" --make_HTML "yes"
-  </command>
-  <inputs>
-    <param name="input1"  type="data" format="tabular" label="Select an input matrix - rows are contigs, columns are counts for each sample"
-       help="Use the HTSeq based count matrix preparation tool to create these matrices from BAM/SAM files and a GTF file of genomic features"/>
-    <param name="title" type="text" value="Differential Counts" size="80" label="Title for job outputs" 
-           help="Supply a meaningful name here to remind you what the outputs contain">
-      <sanitizer invalid_char="">
-        <valid initial="string.letters,string.digits"><add value="_" /> </valid>
-      </sanitizer>
-    </param>
-    <param name="treatment_name" type="text" value="Treatment" size="50" label="Treatment Name"/>
-    <param name="Treat_cols" label="Select columns containing treatment." type="data_column" data_ref="input1" numerical="True" 
-         multiple="true" use_header_names="true" size="120" display="checkboxes">
-        <validator type="no_options" message="Please select at least one column."/>
-    </param>
-    <param name="control_name" type="text" value="Control" size="50" label="Control Name"/>
-    <param name="Control_cols" label="Select columns containing control." type="data_column" data_ref="input1" numerical="True" 
-         multiple="true" use_header_names="true" size="120" display="checkboxes" optional="true">
-    </param>
-    <param name="subjectids" type="text" optional="true" size="120" value = ""
-       label="IF SUBJECTS NOT ALL INDEPENDENT! Enter comma separated strings to indicate sample labels for (eg) pairing - must be one for every column in input"
-       help="Leave blank if no pairing, but eg if data from sample id A99 is in columns 2,4 and id C21 is in 3,5 then enter 'A99,C21,A99,C21'">
-      <sanitizer>
-        <valid initial="string.letters,string.digits"><add value="," /> </valid>
-      </sanitizer>
-    </param>
-    <param name="fQ" type="float" value="0.3" size="5" label="Non-differential contig count quantile threshold - zero to analyze all non-zero read count contigs"
-     help="May be a good or a bad idea depending on the biology and the question. EG 0.3 = sparsest 30% of contigs with at least one read are removed before analysis"/>
-    <param name="useNDF" type="boolean" truevalue="T" falsevalue="F" checked="false" size="1" 
-              label="Non differential filter - remove contigs below a threshold (1 per million) for half or more samples"
-     help="May be a good or a bad idea depending on the biology and the question. This was the old default. Quantile based is available as an alternative"/>
-
-    <conditional name="edgeR">
-        <param name="doedgeR" type="select" 
-           label="Run this model using edgeR"
-           help="edgeR uses a negative binomial model and seems to be powerful, even with few replicates">
-          <option value="F">Do not run edgeR</option>
-          <option value="T" selected="true">Run edgeR</option>
-         </param>
-         <when value="T">
-          <param name="edgeR_priordf" type="integer" value="10" size="3" 
-           label="prior.df for tagwise dispersion - larger value = more squeezing of tag dispersions to common dispersion. Replaces prior.n  and prior.df = prior.n * residual.df"
-           help="10 = edgeR default. Use a larger value to 'smooth' small samples. See edgeR docs and note below"/>
-          <param name="edgeR_robust_method" type="select" value="20" size="3" 
-           label="Use robust dispersion method"
-           help="Use ordinary, anscombe or deviance robust deviance estimates">
-             <option value="ordinary" selected="true">Use ordinary deviance estimates</option>
-             <option value="deviance">Use robust deviance estimates</option>
-             <option value="anscombe">use Anscombe robust deviance estimates</option>
-          </param>
-         </when>
-         <when value="F"></when>
-    </conditional>
-    <conditional name="DESeq2">
-    <param name="doDESeq2" type="select" 
-       label="Run the same model with DESeq2 and compare findings"
-       help="DESeq2 is an update to the DESeq package. It uses different assumptions and methods to edgeR">
-      <option value="F" selected="true">Do not run DESeq2</option>
-      <option value="T">Run DESeq2</option>
-     </param>
-     <when value="T">
-         <param name="DESeq_fitType" type="select">
-            <option value="parametric" selected="true">Parametric (default) fit for dispersions</option>
-            <option value="local">Local fit - this will automagically be used if parametric fit fails</option>
-            <option value="mean">Mean dispersion fit- use this if you really understand what you're doing - read the fine manual linked below in the documentation</option>
-         </param> 
-     </when>
-     <when value="F"> </when>
-    </conditional>
-    <param name="doVoom" type="select" 
-       label="Run the same model with Voom/limma and compare findings"
-       help="Voom uses counts per million and a precise transformation of variance so count data can be analysed using limma">
-      <option value="F" selected="true">Do not run VOOM</option>
-      <option value="T">Run VOOM</option>
-     </param>
-    <!--
-    <conditional name="camera">
-        <param name="doCamera" type="select" label="Run the edgeR implementation of Camera GSEA for up/down gene sets" 
-            help="If yes, you can choose a set of genesets to test and/or supply a gmt format geneset collection from your history">
-        <option value="F" selected="true">Do not run GSEA tests with the Camera algorithm</option>
-        <option value="T">Run GSEA tests with the Camera algorithm</option>
-        </param>
-         <when value="T">
-         <conditional name="gmtSource">
-          <param name="refgmtSource" type="select" 
-             label="Use a gene set (.gmt) from your history and/or use a built-in (MSigDB etc) gene set">
-            <option value="indexed" selected="true">Use a built-in gene set</option>
-            <option value="history">Use a gene set from my history</option>
-            <option value="both">Add a gene set from my history to a built in gene set</option>
-          </param>
-          <when value="indexed">
-            <param name="builtinGMT" type="select" label="Select a gene set matrix (.gmt) file to use for the analysis">
-              <options from_data_table="gseaGMT_3.1">
-                <filter type="sort_by" column="2" />
-                <validator type="no_options" message="No GMT v3.1 files are available - please install them"/>
-              </options>
-            </param>
-          </when>
-          <when value="history">
-            <param name="ownGMT" type="data" format="gmt" label="Select a Gene Set from your history" />
-          </when>
-          <when value="both">
-            <param name="ownGMT" type="data" format="gseagmt" label="Select a Gene Set from your history" />
-            <param name="builtinGMT" type="select" label="Select a gene set matrix (.gmt) file to use for the analysis">
-              <options from_data_table="gseaGMT_4">
-                <filter type="sort_by" column="2" />
-                <validator type="no_options" message="No GMT v4 files are available - please fix tool_data_table and loc files"/>
-              </options>
-            </param>
-           </when>
-         </conditional>
-         </when>
-         <when value="F"> 
-         </when>
-    </conditional>
-    -->
-    <param name="fdrthresh" type="float" value="0.05" size="5" label="P value threshold for FDR filtering for amily wise error rate control"
-     help="Conventional default value of 0.05 recommended"/>
-    <param name="fdrtype" type="select" label="FDR (Type II error) control method" 
-         help="Use fdr or bh typically to control for the number of tests in a reliable way">
-            <option value="fdr" selected="true">fdr</option>
-            <option value="BH">Benjamini Hochberg</option>
-            <option value="BY">Benjamini Yukateli</option>
-            <option value="bonferroni">Bonferroni</option>
-            <option value="hochberg">Hochberg</option>
-            <option value="holm">Holm</option>
-            <option value="hommel">Hommel</option>
-            <option value="none">no control for multiple tests</option>
-    </param>
-  </inputs>
-  <outputs>
-    <data format="tabular" name="out_edgeR" label="${title}_topTable_edgeR.xls">
-         <filter>edgeR['doedgeR'] == "T"</filter>
-    </data>
-    <data format="tabular" name="out_DESeq2" label="${title}_topTable_DESeq2.xls">
-         <filter>DESeq2['doDESeq2'] == "T"</filter>
-    </data>
-    <data format="tabular" name="out_VOOM" label="${title}_topTable_VOOM.xls">
-         <filter>doVoom == "T"</filter>
-    </data>
-    <data format="html" name="html_file" label="${title}.html"/>
-  </outputs>
- <stdio>
-     <exit_code range="4"   level="fatal"   description="Number of subject ids must match total number of samples in the input matrix" />
- </stdio>
- <tests>
-<test>
-<param name='input1' value='test_bams2mx.xls' ftype='tabular' />
- <param name='treatment_name' value='liver' />
- <param name='title' value='edgeRtest' />
- <param name='useNDF' value='' />
- <param name='doedgeR' value='T' />
- <param name='doVoom' value='T' />
- <param name='doDESeq2' value='T' />
- <param name='fdrtype' value='fdr' />
- <param name='edgeR_priordf' value="8" />
- <param name='edgeR_robust' value="ordinary" />
- <param name='fdrthresh' value="0.05" />
- <param name='control_name' value='heart' />
- <param name='subjectids' value='' />
- <param name='Control_cols' value='3,4,5,9' />
- <param name='Treat_cols' value='2,6,7,8' />
- <output name='out_edgeR' file='edgeRtest1out.xls' compare='diff' />
- <output name='html_file' file='edgeRtest1out.html'  compare='diff' lines_diff='20' />
-</test>
-</tests>
-
-<configfiles>
-<configfile name="runme">
-<![CDATA[
-# 
-# edgeR.Rscript
-# updated feb 2014 adding outlier-robust deviance estimate options by ross for R 3.0.2/bioc 2.13
-# updated npv 2011 for R 2.14.0 and edgeR 2.4.0 by ross
-# Performs DGE on a count table containing n replicates of two conditions
-#
-# Parameters
-#
-# 1 - Output Dir
-
-# Original edgeR code by: S.Lunke and A.Kaspi
-reallybig = log10(.Machine\$double.xmax)
-reallysmall = log10(.Machine\$double.xmin)
-library('stringr')
-library('gplots')
-library('edgeR')
-hmap2 = function(cmat,nsamp=100,outpdfname='heatmap2.pdf', TName='Treatment',group=NA,myTitle='title goes here')
-{
-# Perform clustering for significant pvalues after controlling FWER
-    samples = colnames(cmat)
-    gu = unique(group)
-    gn = rownames(cmat)
-    if (length(gu) == 2) {
-        col.map = function(g) {if (g==gu[1]) "#FF0000" else "#0000FF"}
-        pcols = unlist(lapply(group,col.map))        
-        } else {
-        colours = rainbow(length(gu),start=0,end=4/6)
-        pcols = colours[match(group,gu)]        }
-    dm = cmat[(! is.na(gn)),] 
-    # remove unlabelled hm rows
-    nprobes = nrow(dm)
-    # sub = paste('Showing',nprobes,'contigs ranked for evidence of differential abundance')
-    if (nprobes > nsamp) {
-      dm =dm[1:nsamp,]
-      #sub = paste('Showing',nsamp,'contigs ranked for evidence for differential abundance out of',nprobes,'total')
-    }
-    newcolnames = substr(colnames(dm),1,20)
-    colnames(dm) = newcolnames
-    pdf(outpdfname)
-    heatmap.2(dm,main=myTitle,ColSideColors=pcols,col=topo.colors(100),dendrogram="col",key=T,density.info='none',
-         Rowv=F,scale='row',trace='none',margins=c(8,8),cexRow=0.4,cexCol=0.5)
-    dev.off()
-}
-
-hmap = function(cmat,nmeans=4,outpdfname="heatMap.pdf",nsamp=250,TName='Treatment',group=NA,myTitle="Title goes here")
-{
-    # for 2 groups only was
-    #col.map = function(g) {if (g==TName) "#FF0000" else "#0000FF"}
-    #pcols = unlist(lapply(group,col.map))
-    gu = unique(group)
-    colours = rainbow(length(gu),start=0.3,end=0.6)
-    pcols = colours[match(group,gu)]
-    nrows = nrow(cmat)
-    mtitle = paste(myTitle,'Heatmap: n contigs =',nrows)
-    if (nrows > nsamp)  {
-               cmat = cmat[c(1:nsamp),]
-               mtitle = paste('Heatmap: Top ',nsamp,' DE contigs (of ',nrows,')',sep='')
-          }
-    newcolnames = substr(colnames(cmat),1,20)
-    colnames(cmat) = newcolnames
-    pdf(outpdfname)
-    heatmap(cmat,scale='row',main=mtitle,cexRow=0.3,cexCol=0.4,Rowv=NA,ColSideColors=pcols)
-    dev.off()
-}
-
-qqPlot = function(descr='qqplot',pvector, outpdf='qqplot.pdf',...)
-# stolen from https://gist.github.com/703512
-{
-    o = -log10(sort(pvector,decreasing=F))
-    e = -log10( 1:length(o)/length(o) )
-    o[o==-Inf] = reallysmall
-    o[o==Inf] = reallybig
-    maint = descr
-    pdf(outpdf)
-    plot(e,o,pch=19,cex=1, main=maint, ...,
-        xlab=expression(Expected~~-log[10](italic(p))),
-        ylab=expression(Observed~~-log[10](italic(p))),
-        xlim=c(0,max(e)), ylim=c(0,max(o)))
-    lines(e,e,col="red")
-    grid(col = "lightgray", lty = "dotted")
-    dev.off()
-}
-
-smearPlot = function(DGEList,deTags, outSmear, outMain)
-        {
-        pdf(outSmear)
-        plotSmear(DGEList,de.tags=deTags,main=outMain)
-        grid(col="lightgray", lty="dotted")
-        dev.off()
-        }
-        
-boxPlot = function(rawrs,cleanrs,maint,myTitle,pdfname)
-{   # 
-        nc = ncol(rawrs)
-        for (i in c(1:nc)) {rawrs[(rawrs[,i] < 0),i] = NA}
-        fullnames = colnames(rawrs)
-        newcolnames = substr(colnames(rawrs),1,20)
-        colnames(rawrs) = newcolnames
-        newcolnames = substr(colnames(cleanrs),1,20)
-        colnames(cleanrs) = newcolnames
-        defpar = par(no.readonly=T)
-        print.noquote('raw contig counts by sample:')
-        print.noquote(summary(rawrs))
-        print.noquote('normalised contig counts by sample:')
-        print.noquote(summary(cleanrs))
-        pdf(pdfname)
-        par(mfrow=c(1,2))
-        boxplot(rawrs,varwidth=T,notch=T,ylab='log contig count',col="maroon",las=3,cex.axis=0.35,main=paste('Raw:',maint))
-        grid(col="lightgray",lty="dotted")
-        boxplot(cleanrs,varwidth=T,notch=T,ylab='log contig count',col="maroon",las=3,cex.axis=0.35,main=paste('After ',maint))
-        grid(col="lightgray",lty="dotted")
-        dev.off()
-        pdfname = "sample_counts_histogram.pdf" 
-        nc = ncol(rawrs)
-        print.noquote(paste('Using ncol rawrs=',nc))
-        ncroot = round(sqrt(nc))
-        if (ncroot*ncroot < nc) { ncroot = ncroot + 1 }
-        m = c()
-        for (i in c(1:nc)) {
-              rhist = hist(rawrs[,i],breaks=100,plot=F)
-              m = append(m,max(rhist\$counts))
-             }
-        ymax = max(m)
-        ncols = length(fullnames)
-        if (ncols > 20) 
-        {
-           scale = 7*ncols/20
-           pdf(pdfname,width=scale,height=scale)
-        } else { 
-           pdf(pdfname)
-        }
-        par(mfrow=c(ncroot,ncroot))
-        for (i in c(1:nc)) {
-                 hist(rawrs[,i], main=paste("Contig logcount",i), xlab='log raw count', col="maroon", 
-                 breaks=100,sub=fullnames[i],cex=0.8,ylim=c(0,ymax))
-             }
-        dev.off()
-        par(defpar)
-      
-}
-
-cumPlot = function(rawrs,cleanrs,maint,myTitle)
-{   # updated to use ecdf
-        pdfname = "Filtering_rowsum_bar_charts.pdf"
-        defpar = par(no.readonly=T)
-        lrs = log(rawrs,10) 
-        lim = max(lrs)
-        pdf(pdfname)
-        par(mfrow=c(2,1))
-        hist(lrs,breaks=100,main=paste('Before:',maint),xlab="# Reads (log)",
-             ylab="Count",col="maroon",sub=myTitle, xlim=c(0,lim),las=1)
-        grid(col="lightgray", lty="dotted")
-        lrs = log(cleanrs,10) 
-        hist(lrs,breaks=100,main=paste('After:',maint),xlab="# Reads (log)",
-             ylab="Count",col="maroon",sub=myTitle,xlim=c(0,lim),las=1)
-        grid(col="lightgray", lty="dotted")
-        dev.off()
-        par(defpar)
-}
-
-cumPlot1 = function(rawrs,cleanrs,maint,myTitle)
-{   # updated to use ecdf
-        pdfname = paste(gsub(" ","", myTitle , fixed=TRUE),"RowsumCum.pdf",sep='_')
-        pdf(pdfname)
-        par(mfrow=c(2,1))
-        lastx = max(rawrs)
-        rawe = knots(ecdf(rawrs))
-        cleane = knots(ecdf(cleanrs))
-        cy = 1:length(cleane)/length(cleane)
-        ry = 1:length(rawe)/length(rawe)
-        plot(rawe,ry,type='l',main=paste('Before',maint),xlab="Log Contig Total Reads",
-             ylab="Cumulative proportion",col="maroon",log='x',xlim=c(1,lastx),sub=myTitle)
-        grid(col="blue")
-        plot(cleane,cy,type='l',main=paste('After',maint),xlab="Log Contig Total Reads",
-             ylab="Cumulative proportion",col="maroon",log='x',xlim=c(1,lastx),sub=myTitle)
-        grid(col="blue")
-        dev.off()
-}
-
-
-
-doGSEAold = function(y=NULL,design=NULL,histgmt="",
-                  bigmt="/data/genomes/gsea/3.1/Abetterchoice_nocgp_c2_c3_c5_symbols_all.gmt",
-                  ntest=0, myTitle="myTitle", outfname="GSEA.xls", minnin=5, maxnin=2000,fdrthresh=0.05,fdrtype="BH")
-{
-  sink('Camera.log')
-  genesets = c()
-  if (bigmt > "")
-  {
-    bigenesets = readLines(bigmt)
-    genesets = bigenesets
-  }
-  if (histgmt > "")
-  {
-    hgenesets = readLines(histgmt)
-    if (bigmt > "") {
-      genesets = rbind(genesets,hgenesets)
-    } else {
-      genesets = hgenesets
-    } # use only history if no bi
-  }
-  print.noquote(paste("@@@read",length(genesets), 'genesets from',histgmt,bigmt))
-  genesets = strsplit(genesets,'\t') # tabular. genesetid\tURLorwhatever\tgene_1\t..\tgene_n
-  outf = outfname
-  head=paste(myTitle,'edgeR GSEA')
-  write(head,file=outfname,append=F)
-  ntest=length(genesets)
-  urownames = toupper(rownames(y))
-  upcam = c()
-  downcam = c()
-  for (i in 1:ntest) {
-    gs = unlist(genesets[i])
-    g = gs[1] # geneset_id
-    u = gs[2]
-    if (u > "") { u = paste("<a href=\'",u,"\'>",u,"</a>",sep="") }
-    glist = gs[3:length(gs)] # member gene symbols
-    glist = toupper(glist)
-    inglist = urownames %in% glist
-    nin = sum(inglist)
-    if ((nin > minnin) && (nin < maxnin)) {
-      ### print(paste('@@found',sum(inglist),'genes in glist'))
-      camres = camera(y=y,index=inglist,design=design)
-      if (! is.null(camres)) {
-      rownames(camres) = g # gene set name
-      camres = cbind(GeneSet=g,URL=u,camres)
-      if (camres\$Direction == "Up") 
-        {
-        upcam = rbind(upcam,camres) } else {
-          downcam = rbind(downcam,camres)
-        }
-      }
-   }
-  }
-  uscam = upcam[order(upcam\$PValue),]
-  unadjp = uscam\$PValue
-  uscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  nup = max(10,sum((uscam\$adjPValue < fdrthresh)))
-  dscam = downcam[order(downcam\$PValue),]
-  unadjp = dscam\$PValue
-  dscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  ndown = max(10,sum((dscam\$adjPValue < fdrthresh)))
-  write.table(uscam,file=paste('camera_up',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  write.table(dscam,file=paste('camera_down',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera up top',nup,'gene sets:'))
-  write.table(head(uscam,nup),file="",quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera down top',ndown,'gene sets:'))
-  write.table(head(dscam,ndown),file="",quote=F,sep='\t',row.names=F)
-  sink()
-}
-
-
-
-
-doGSEA = function(y=NULL,design=NULL,histgmt="",
-                  bigmt="/data/genomes/gsea/3.1/Abetterchoice_nocgp_c2_c3_c5_symbols_all.gmt",
-                  ntest=0, myTitle="myTitle", outfname="GSEA.xls", minnin=5, maxnin=2000,fdrthresh=0.05,fdrtype="BH")
-{
-  sink('Camera.log')
-  genesets = c()
-  if (bigmt > "")
-  {
-    bigenesets = readLines(bigmt)
-    genesets = bigenesets
-  }
-  if (histgmt > "")
-  {
-    hgenesets = readLines(histgmt)
-    if (bigmt > "") {
-      genesets = rbind(genesets,hgenesets)
-    } else {
-      genesets = hgenesets
-    } # use only history if no bi
-  }
-  print.noquote(paste("@@@read",length(genesets), 'genesets from',histgmt,bigmt))
-  genesets = strsplit(genesets,'\t') # tabular. genesetid\tURLorwhatever\tgene_1\t..\tgene_n
-  outf = outfname
-  head=paste(myTitle,'edgeR GSEA')
-  write(head,file=outfname,append=F)
-  ntest=length(genesets)
-  urownames = toupper(rownames(y))
-  upcam = c()
-  downcam = c()
-  incam = c()
-  urls = c()
-  gsids = c()
-  for (i in 1:ntest) {
-    gs = unlist(genesets[i])
-    gsid = gs[1] # geneset_id
-    url = gs[2]
-    if (url > "") { url = paste("<a href=\'",url,"\'>",url,"</a>",sep="") }
-    glist = gs[3:length(gs)] # member gene symbols
-    glist = toupper(glist)
-    inglist = urownames %in% glist
-    nin = sum(inglist)
-    if ((nin > minnin) && (nin < maxnin)) {
-      incam = c(incam,inglist)
-      gsids = c(gsids,gsid)
-      urls = c(urls,url)
-    }
-  }
-  incam = as.list(incam)
-  names(incam) = gsids
-  allcam = camera(y=y,index=incam,design=design)
-  allcamres = cbind(geneset=gsids,allcam,URL=urls)
-  for (i in 1:ntest) {
-    camres = allcamres[i]
-    res = try(test = (camres\$Direction == "Up"))
-    if ("try-error" %in% class(res)) {
-      cat("test failed, camres = :")
-      print.noquote(camres)
-    } else  { if (camres\$Direction == "Up")
-    {  upcam = rbind(upcam,camres)
-    } else { downcam = rbind(downcam,camres)
-    }
-              
-    }
-  }
-  uscam = upcam[order(upcam\$PValue),]
-  unadjp = uscam\$PValue
-  uscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  nup = max(10,sum((uscam\$adjPValue < fdrthresh)))
-  dscam = downcam[order(downcam\$PValue),]
-  unadjp = dscam\$PValue
-  dscam\$adjPValue = p.adjust(unadjp,method=fdrtype)
-  ndown = max(10,sum((dscam\$adjPValue < fdrthresh)))
-  write.table(uscam,file=paste('camera_up',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  write.table(dscam,file=paste('camera_down',outfname,sep='_'),quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera up top',nup,'gene sets:'))
-  write.table(head(uscam,nup),file="",quote=F,sep='\t',row.names=F)
-  print.noquote(paste('@@@@@ Camera down top',ndown,'gene sets:'))
-  write.table(head(dscam,ndown),file="",quote=F,sep='\t',row.names=F)
-  sink()
-  }
- 
-
-edgeIt = function (Count_Matrix=c(),group=c(),out_edgeR=F,out_VOOM=F,out_DESeq2=F,fdrtype='fdr',priordf=5, 
-        fdrthresh=0.05,outputdir='.', myTitle='Differential Counts',libSize=c(),useNDF=F,
-        filterquantile=0.2, subjects=c(),mydesign=NULL,
-        doDESeq2=T,doVoom=T,doCamera=T,doedgeR=T,org='hg19',
-        histgmt="", bigmt="/data/genomes/gsea/3.1/Abetterchoice_nocgp_c2_c3_c5_symbols_all.gmt",
-        doCook=F,DESeq_fitType="parameteric",robust_meth='ordinary') 
-{
-  # Error handling
-  if (length(unique(group))!=2){
-    print("Number of conditions identified in experiment does not equal 2")
-    q()
-    }
-  require(edgeR)
-  options(width = 512) 
-  mt = paste(unlist(strsplit(myTitle,'_')),collapse=" ")
-  allN = nrow(Count_Matrix)
-  nscut = round(ncol(Count_Matrix)/2)
-  colTotmillionreads = colSums(Count_Matrix)/1e6
-  counts.dataframe = as.data.frame(c()) 
-  rawrs = rowSums(Count_Matrix)
-  nonzerod = Count_Matrix[(rawrs > 0),] # remove all zero count genes
-  nzN = nrow(nonzerod)
-  nzrs = rowSums(nonzerod)
-  zN = allN - nzN
-  print('# Quantiles for non-zero row counts:',quote=F)
-  print(quantile(nzrs,probs=seq(0,1,0.1)),quote=F)
-  if (useNDF == T)
-  {
-    gt1rpin3 = rowSums(Count_Matrix/expandAsMatrix(colTotmillionreads,dim(Count_Matrix)) >= 1) >= nscut
-    lo = colSums(Count_Matrix[!gt1rpin3,])
-    workCM = Count_Matrix[gt1rpin3,]
-    cleanrs = rowSums(workCM)
-    cleanN = length(cleanrs)
-    meth = paste( "After removing",length(lo),"contigs with fewer than ",nscut," sample read counts >= 1 per million, there are",sep="")
-    print(paste("Read",allN,"contigs. Removed",zN,"contigs with no reads.",meth,cleanN,"contigs"),quote=F)
-    maint = paste('Filter >=1/million reads in >=',nscut,'samples')
-  }   else {        
-    useme = (nzrs > quantile(nzrs,filterquantile))
-    workCM = nonzerod[useme,]
-    lo = colSums(nonzerod[!useme,])
-    cleanrs = rowSums(workCM)
-    cleanN = length(cleanrs)
-    meth = paste("After filtering at count quantile =",filterquantile,", there are",sep="")
-    print(paste('Read',allN,"contigs. Removed",zN,"with no reads.",meth,cleanN,"contigs"),quote=F)
-    maint = paste('Filter below',filterquantile,'quantile')
-  }
-  cumPlot(rawrs=rawrs,cleanrs=cleanrs,maint=maint,myTitle=myTitle)
-  allgenes = rownames(workCM)
-  reg = "^chr([0-9]+):([0-9]+)-([0-9]+)"
-  genecards="<a href=\'http://www.genecards.org/index.php?path=/Search/keyword/"
-  ucsc = paste("<a href=\'http://genome.ucsc.edu/cgi-bin/hgTracks?db=",org,sep='')
-  testreg = str_match(allgenes,reg)
-  if (sum(!is.na(testreg[,1]))/length(testreg[,1]) > 0.8) # is ucsc style string
-  {
-    print("@@ using ucsc substitution for urls")
-    contigurls = paste0(ucsc,"&amp;position=chr",testreg[,2],":",testreg[,3],"-",testreg[,4],"\'>",allgenes,"</a>")
-  } else {
-    print("@@ using genecards substitution for urls")
-    contigurls = paste0(genecards,allgenes,"\'>",allgenes,"</a>")
-  }
-  print.noquote("# urls")
-  print.noquote(head(contigurls))
-  print(paste("# Total low count contigs per sample = ",paste(lo,collapse=',')),quote=F) 
-  cmrowsums = rowSums(workCM)
-  TName=unique(group)[1]
-  CName=unique(group)[2]
-  if (is.null(mydesign)) {
-    if (length(subjects) == 0) 
-    {
-      mydesign = model.matrix(~group)
-    } 
-    else { 
-      subjf = factor(subjects)
-      mydesign = model.matrix(~subjf+group) # we block on subject so make group last to simplify finding it
-    }
-  } 
-  print.noquote(paste('Using samples:',paste(colnames(workCM),collapse=',')))
-  print.noquote('Using design matrix:')
-  print.noquote(mydesign)
-  if (doedgeR == T) {
-  sink('edgeR.log')
-  #### Setup DGEList object
-  DGEList = DGEList(counts=workCM, group = group)
-  DGEList = calcNormFactors(DGEList)
-  if (robust_meth == 'ordinary') {
-       DGEList = estimateGLMCommonDisp(DGEList,mydesign)
-       DGEList = estimateGLMTrendedDisp(DGEList,mydesign)
-       DGEList = estimateGLMTagwiseDisp(DGEList,mydesign,prior.df = edgeR_priordf)
-
-       comdisp = DGEList\$common.dispersion
-       estpriorn = getPriorN(DGEList)
-       print(paste("Common Dispersion =",comdisp,"CV = ",sqrt(comdisp),"getPriorN = ",estpriorn),quote=F)
-     } else { 
-       DGEList = estimateGLMRobustDisp(DGEList,design=mydesign, prior.df = edgeR_priordf, maxit = 6, residual.type = robust_meth)
-          }
-    
-  
-  DGLM = glmFit(DGEList,design=mydesign)
-  DE = glmLRT(DGLM,coef=ncol(DGLM\$design)) # always last one - subject is first if needed
-  efflib = DGEList\$samples\$lib.size*DGEList\$samples\$norm.factors
-  normData = (1e+06*DGEList\$counts/efflib)
-  uoutput = cbind( 
-    Name=as.character(rownames(DGEList\$counts)),
-    DE\$table,
-    adj.p.value=p.adjust(DE\$table\$PValue, method=fdrtype),
-    Dispersion=DGEList\$tagwise.dispersion,totreads=cmrowsums,normData,
-    DGEList\$counts
-  )
-  soutput = uoutput[order(DE\$table\$PValue),] # sorted into p value order - for quick toptable
-  goodness = gof(DGLM, pcutoff=fdrthresh)
-  if (sum(goodness\$outlier) > 0) {
-    print.noquote('GLM outliers:')
-    print(paste(rownames(DGLM)[(goodness\$outlier)],collapse=','),quote=F)
-    } else { 
-      print('No GLM fit outlier genes found\n')
-    }
-  z = limma::zscoreGamma(goodness\$gof.statistic, shape=goodness\$df/2, scale=2)
-  pdf("edgeR_GoodnessofFit.pdf")
-  qq = qqnorm(z, panel.first=grid(), main="tagwise dispersion")
-  abline(0,1,lwd=3)
-  points(qq\$x[goodness\$outlier],qq\$y[goodness\$outlier], pch=16, col="maroon")
-  dev.off()
-  efflib = DGEList\$samples\$lib.size*DGEList\$samples\$norm.factors
-  normData = (1e+06*DGEList\$counts/efflib)
-  uniqueg = unique(group)
-  #### Plot MDS
-  sample_colors =  match(group,levels(group))
-  sampleTypes = levels(factor(group))
-  print.noquote(sampleTypes)
-  pdf("edgeR_MDSplot.pdf")
-  plotMDS.DGEList(DGEList,main=paste("edgeR MDS for",myTitle),cex=0.5,col=sample_colors,pch=sample_colors)
-  legend(x="topleft", legend = sampleTypes,col=c(1:length(sampleTypes)), pch=19)
-  grid(col="blue")
-  dev.off()
-  colnames(normData) = paste( colnames(normData),'N',sep="_")
-  print(paste('Raw sample read totals',paste(colSums(nonzerod,na.rm=T),collapse=',')))
-  nzd = data.frame(log(nonzerod + 1e-2,10))
-  try( boxPlot(rawrs=nzd,cleanrs=log(normData,10),maint='TMM Normalisation',myTitle=myTitle,pdfname="edgeR_raw_norm_counts_box.pdf") )
-  write.table(soutput,file=out_edgeR, quote=FALSE, sep="\t",row.names=F)
-  tt = cbind( 
-    Name=as.character(rownames(DGEList\$counts)),
-    DE\$table,
-    adj.p.value=p.adjust(DE\$table\$PValue, method=fdrtype),
-    Dispersion=DGEList\$tagwise.dispersion,totreads=cmrowsums
-  )
-  print.noquote("# edgeR Top tags\n")
-  tt = cbind(tt,URL=contigurls) # add to end so table isn't laid out strangely
-  tt = tt[order(DE\$table\$PValue),] 
-  print.noquote(tt[1:50,])
-  deTags = rownames(uoutput[uoutput\$adj.p.value < fdrthresh,])
-  nsig = length(deTags)
-  print(paste('#',nsig,'tags significant at adj p=',fdrthresh),quote=F)
-  deColours = ifelse(deTags,'red','black')
-  pdf("edgeR_BCV_vs_abundance.pdf")
-  plotBCV(DGEList, cex=0.3, main="Biological CV vs abundance")
-  dev.off()
-  dg = DGEList[order(DE\$table\$PValue),]
-  #normData = (1e+06 * dg\$counts/expandAsMatrix(dg\$samples\$lib.size, dim(dg)))
-  efflib = dg\$samples\$lib.size*dg\$samples\$norm.factors
-  normData = (1e+06*dg\$counts/efflib)
-  outpdfname="edgeR_top_100_heatmap.pdf"
-  hmap2(normData,nsamp=100,TName=TName,group=group,outpdfname=outpdfname,myTitle=paste('edgeR Heatmap',myTitle))
-  outSmear = "edgeR_smearplot.pdf"
-  outMain = paste("Smear Plot for ",TName,' Vs ',CName,' (FDR@',fdrthresh,' N = ',nsig,')',sep='')
-  smearPlot(DGEList=DGEList,deTags=deTags, outSmear=outSmear, outMain = outMain)
-  qqPlot(descr=paste(myTitle,'edgeR adj p QQ plot'),pvector=tt\$adj.p.value,outpdf='edgeR_qqplot.pdf')
-  norm.factor = DGEList\$samples\$norm.factors
-  topresults.edgeR = soutput[which(soutput\$adj.p.value < fdrthresh), ]
-  edgeRcountsindex = which(allgenes %in% rownames(topresults.edgeR))
-  edgeRcounts = rep(0, length(allgenes))
-  edgeRcounts[edgeRcountsindex] = 1  # Create venn diagram of hits
-  sink()
-  } ### doedgeR
-  if (doDESeq2 == T)
-  {
-    sink("DESeq2.log")
-    # DESeq2
-    require('DESeq2')
-    library('RColorBrewer')
-    if (length(subjects) == 0)
-        {
-        pdata = data.frame(Name=colnames(workCM),Rx=group,row.names=colnames(workCM))
-        deSEQds = DESeqDataSetFromMatrix(countData = workCM,  colData = pdata, design = formula(~ Rx))
-        } else {
-        pdata = data.frame(Name=colnames(workCM),Rx=group,subjects=subjects,row.names=colnames(workCM))
-        deSEQds = DESeqDataSetFromMatrix(countData = workCM,  colData = pdata, design = formula(~ subjects + Rx))
-        }
-    #DESeq2 = DESeq(deSEQds,fitType='local',pAdjustMethod=fdrtype)
-    #rDESeq = results(DESeq2)
-    #newCountDataSet(workCM, group)
-    deSeqDatsizefac = estimateSizeFactors(deSEQds)
-    deSeqDatdisp = estimateDispersions(deSeqDatsizefac,fitType=DESeq_fitType)
-    resDESeq = nbinomWaldTest(deSeqDatdisp, pAdjustMethod=fdrtype)
-    rDESeq = as.data.frame(results(resDESeq))
-    rDESeq = cbind(Contig=rownames(workCM),rDESeq,NReads=cmrowsums,URL=contigurls)
-    srDESeq = rDESeq[order(rDESeq\$pvalue),]
-    qqPlot(descr=paste(myTitle,'DESeq2 adj p qq plot'),pvector=rDESeq\$padj,outpdf='DESeq2_qqplot.pdf')
-    cat("# DESeq top 50\n")
-    print.noquote(srDESeq[1:50,])
-    write.table(srDESeq,file=out_DESeq2, quote=FALSE, sep="\t",row.names=F)
-    topresults.DESeq = rDESeq[which(rDESeq\$padj < fdrthresh), ]
-    DESeqcountsindex = which(allgenes %in% rownames(topresults.DESeq))
-    DESeqcounts = rep(0, length(allgenes))
-    DESeqcounts[DESeqcountsindex] = 1
-    pdf("DESeq2_dispersion_estimates.pdf")
-    plotDispEsts(resDESeq)
-    dev.off()
-    ysmall = abs(min(rDESeq\$log2FoldChange))
-    ybig = abs(max(rDESeq\$log2FoldChange))
-    ylimit = min(4,ysmall,ybig)
-    pdf("DESeq2_MA_plot.pdf")
-    plotMA(resDESeq,main=paste(myTitle,"DESeq2 MA plot"),ylim=c(-ylimit,ylimit))
-    dev.off()
-    rlogres = rlogTransformation(resDESeq)
-    sampledists = dist( t( assay(rlogres) ) )
-    sdmat = as.matrix(sampledists)
-    pdf("DESeq2_sample_distance_plot.pdf")
-    heatmap.2(sdmat,trace="none",main=paste(myTitle,"DESeq2 sample distances"),
-         col = colorRampPalette( rev(brewer.pal(9, "RdBu")) )(255))
-    dev.off()
-    ###outpdfname="DESeq2_top50_heatmap.pdf"
-    ###hmap2(sresDESeq,nsamp=50,TName=TName,group=group,outpdfname=outpdfname,myTitle=paste('DESeq2 vst rlog Heatmap',myTitle))
-    sink()
-    result = try( (ppca = plotPCA( varianceStabilizingTransformation(deSeqDatdisp,blind=T), intgroup=c("Rx","Name")) ) )
-    if ("try-error" %in% class(result)) {
-         print.noquote('DESeq2 plotPCA failed.')
-         } else {
-         pdf("DESeq2_PCA_plot.pdf")
-         #### wtf - print? Seems needed to get this to work
-         print(ppca)
-         dev.off()
-        }
-  }
-
-  if (doVoom == T) {
-      sink('VOOM.log')
-      if (doedgeR == F) {
-         #### Setup DGEList object
-         DGEList = DGEList(counts=workCM, group = group)
-         DGEList = estimateGLMCommonDisp(DGEList,mydesign)
-         DGEList = estimateGLMTrendedDisp(DGEList,mydesign)
-         DGEList = estimateGLMTagwiseDisp(DGEList,mydesign)
-         }
-      calcNormFactors(DGEList) 
-      ls = colSums(DGEList\$counts) * DGEList\$samples\$norm.factors
-      pdf("VOOM_mean_variance_plot.pdf")
-      dat.voomed = voom(DGEList, mydesign, plot = TRUE, lib.size = ls)
-      dev.off()
-      # Use limma to fit data
-      fit = lmFit(dat.voomed, mydesign)
-      fit = eBayes(fit)
-      rvoom = topTable(fit, coef = length(colnames(mydesign)), adj = fdrtype, n = Inf, sort="none")
-      qqPlot(descr=paste(myTitle,'VOOM-limma adj p QQ plot'),pvector=rvoom\$adj.P.Val,outpdf='VOOM_qqplot.pdf')
-      rownames(rvoom) = rownames(workCM)
-      rvoom = cbind(rvoom,NReads=cmrowsums,URL=contigurls)
-      srvoom = rvoom[order(rvoom\$P.Value),]
-      cat("# VOOM top 50\n")
-      print(srvoom[1:50,])
-      write.table(srvoom,file=out_VOOM, quote=FALSE, sep="\t",row.names=F)
-      # Use an FDR cutoff to find interesting samples for edgeR, DESeq and voom/limma
-      topresults.voom = rvoom[which(rvoom\$adj.P.Val < fdrthresh), ]
-      voomcountsindex = which(allgenes %in% topresults.voom\$ID)
-      voomcounts = rep(0, length(allgenes))
-      voomcounts[voomcountsindex] = 1
-      sink()
-  }
-
-  if (doCamera) {
-  doGSEA(y=DGEList,design=mydesign,histgmt=histgmt,bigmt=bigmt,ntest=20,myTitle=myTitle,
-    outfname=paste(mt,"GSEA.xls",sep="_"),fdrthresh=fdrthresh,fdrtype=fdrtype)
-  }
-  counts.dataframe = c()
-  vennmain = 'no venn'
-  if ((doDESeq2==T) || (doVoom==T) || (doedgeR==T)) {
-    if ((doVoom==T) && (doDESeq2==T) && (doedgeR==T)) {
-        vennmain = paste(mt,'Voom,edgeR and DESeq2 overlap at FDR=',fdrthresh)
-        counts.dataframe = data.frame(edgeR = edgeRcounts, DESeq2 = DESeqcounts, 
-                                       VOOM_limma = voomcounts, row.names = allgenes)
-       } else if ((doDESeq2==T) && (doedgeR==T))  {
-         vennmain = paste(mt,'DESeq2 and edgeR overlap at FDR=',fdrthresh)
-         counts.dataframe = data.frame(edgeR = edgeRcounts, DESeq2 = DESeqcounts, row.names = allgenes)
-       } else if ((doVoom==T) && (doedgeR==T)) {
-        vennmain = paste(mt,'Voom and edgeR overlap at FDR=',fdrthresh)
-        counts.dataframe = data.frame(edgeR = edgeRcounts, VOOM_limma = voomcounts, row.names = allgenes)
-       }
-    
-    if (nrow(counts.dataframe > 1)) {
-      counts.venn = vennCounts(counts.dataframe)
-      vennf = "Venn_significant_genes_overlap.pdf" 
-      pdf(vennf)
-      vennDiagram(counts.venn,main=vennmain,col="maroon")
-      dev.off()
-    }
-  } #### doDESeq2 or doVoom
-  
-}
-#### Done
-
-###sink(stdout(),append=T,type="message")
-builtin_gmt = ""
-history_gmt = ""
-history_gmt_name = ""
-out_edgeR = F
-out_DESeq2 = F
-out_VOOM = "$out_VOOM"
-edgeR_robust_meth = "ordinary" # control robust deviance options
-doDESeq2 = $DESeq2.doDESeq2
-doVoom = $doVoom
-doCamera = F
-doedgeR = $edgeR.doedgeR
-edgeR_priordf = 10
-
-
-#if $doVoom == "T":
-  out_VOOM = "$out_VOOM"
-#end if
-
-#if $DESeq2.doDESeq2 == "T":
-  out_DESeq2 = "$out_DESeq2"
-  doDESeq2 = T
-  DESeq_fitType = "$DESeq2.DESeq_fitType"
-#end if
-
-#if $edgeR.doedgeR == "T":
-  out_edgeR = "$out_edgeR"
-  edgeR_priordf = $edgeR.edgeR_priordf  
-  edgeR_robust_meth = "$edgeR.edgeR_robust_method"
-#end if
-
-
-if (sum(c(doedgeR,doVoom,doDESeq2)) == 0)
-{
-write("No methods chosen - nothing to do! Please try again after choosing one or more methods", stderr())
-quit(save="no",status=2)
-}
-
-Out_Dir = "$html_file.files_path"
-Input =  "$input1"
-TreatmentName = "$treatment_name"
-TreatmentCols = "$Treat_cols"
-ControlName = "$control_name"
-ControlCols= "$Control_cols"
-org = "$input1.dbkey"
-if (org == "") { org = "hg19"}
-fdrtype = "$fdrtype"
-fdrthresh = $fdrthresh
-useNDF = $useNDF
-fQ = $fQ # non-differential centile cutoff
-myTitle = "$title"
-sids = strsplit("$subjectids",',')
-subjects = unlist(sids)
-nsubj = length(subjects)
-TCols = as.numeric(strsplit(TreatmentCols,",")[[1]])-1
-CCols = as.numeric(strsplit(ControlCols,",")[[1]])-1 
-cat('Got TCols=')
-cat(TCols)
-cat('; CCols=')
-cat(CCols)
-cat('\n')
-useCols = c(TCols,CCols)
-if (file.exists(Out_Dir) == F) dir.create(Out_Dir)
-Count_Matrix = read.table(Input,header=T,row.names=1,sep='\t') #Load tab file assume header
-snames = colnames(Count_Matrix)
-nsamples = length(snames)
-if (nsubj >  0 & nsubj != nsamples) {
-options("show.error.messages"=T)
-mess = paste('Fatal error: Supplied subject id list',paste(subjects,collapse=','),
-   'has length',nsubj,'but there are',nsamples,'samples',paste(snames,collapse=','))
-write(mess, stderr())
-quit(save="no",status=4)
-}
-if (length(subjects) != 0) {subjects = subjects[useCols]}
-Count_Matrix = Count_Matrix[,useCols] ### reorder columns
-rn = rownames(Count_Matrix)
-islib = rn %in% c('librarySize','NotInBedRegions')
-LibSizes = Count_Matrix[subset(rn,islib),][1] # take first
-Count_Matrix = Count_Matrix[subset(rn,! islib),]
-group = c(rep(TreatmentName,length(TCols)), rep(ControlName,length(CCols)) )             #Build a group descriptor
-group = factor(group, levels=c(ControlName,TreatmentName))
-colnames(Count_Matrix) = paste(group,colnames(Count_Matrix),sep="_")                   #Relable columns
-results = edgeIt(Count_Matrix=Count_Matrix,group=group, out_edgeR=out_edgeR, out_VOOM=out_VOOM, out_DESeq2=out_DESeq2,
-                 fdrtype='BH',mydesign=NULL,priordf=edgeR_priordf,fdrthresh=fdrthresh,outputdir='.',
-                 myTitle=myTitle,useNDF=F,libSize=c(),filterquantile=fQ,subjects=subjects,
-                 doDESeq2=doDESeq2,doVoom=doVoom,doCamera=doCamera,doedgeR=doedgeR,org=org,
-                 histgmt=history_gmt,bigmt=builtin_gmt,DESeq_fitType=DESeq_fitType,robust_meth=edgeR_robust_meth)
-sessionInfo()
-]]>
-</configfile>
-</configfiles>
-<help>
-
-**What it does**
-
-Allows short read sequence counts from controlled experiments to be analysed for differentially expressed genes.
-Optionally adds a term for subject if not all samples are independent or if some other factor needs to be blocked in the design.
-
-**Input**
-
-Requires a count matrix as a tabular file. These are best made using the companion HTSeq_ based counter Galaxy wrapper
-and your fave gene model to generate inputs. Each row is a genomic feature (gene or exon eg) and each column the 
-non-negative integer count of reads from one sample overlapping the feature. 
-The matrix must have a header row uniquely identifying the source samples, and unique row names in 
-the first column. Typically the row names are gene symbols or probe ids for downstream use in GSEA and other methods.
-
-**Specifying comparisons**
-
-This is basically dumbed down for two factors - case vs control.
-
-More complex interfaces are possible but painful at present. 
-Probably need to specify a phenotype file to do this better.
-Work in progress. Send code.
-
-If you have (eg) paired samples and wish to include a term in the GLM to account for some other factor (subject in the case of paired samples),
-put a comma separated list of indicators for every sample (whether modelled or not!) indicating (eg) the subject number or 
-A list of integers, one for each subject or an empty string if samples are all independent.
-If not empty, there must be exactly as many integers in the supplied integer list as there are columns (samples) in the count matrix.
-Integers for samples that are not in the analysis *must* be present in the string as filler even if not used.
-
-So if you have 2 pairs out of 6 samples, you need to put in unique integers for the unpaired ones
-eg if you had 6 samples with the first two independent but the second and third pairs each being from independent subjects. you might use
-8,9,1,1,2,2 
-as subject IDs to indicate two paired samples from the same subject in columns 3/4 and 5/6
-
-**Methods available**
-
-You can run 3 popular Bioconductor packages available for count data.
-
-edgeR - see edgeR_ for details
-
-VOOM/limma - see limma_VOOM_ for details
-
-DESeq2 - see DESeq2_ for details
-
-and optionally camera in edgeR which works better if MSigDB is installed.
-
-**Outputs**
-
-Some helpful plots and analysis results. Note that most of these are produced using R code 
-suggested by the excellent documentation and vignettes for the Bioconductor
-packages invoked. The Tool Factory is used to automatically lay these out for you to enjoy.
-
-**Note on Voom**
-
-The voom from limma version 3.16.6 help in R includes this from the authors - but you should read the paper to interpret this method.
-
-This function is intended to process RNA-Seq or ChIP-Seq data prior to linear modelling in limma.
-
-voom is an acronym for mean-variance modelling at the observational level.
-The key concern is to estimate the mean-variance relationship in the data, then use this to compute appropriate weights for each observation.
-Count data almost show non-trivial mean-variance relationships. Raw counts show increasing variance with increasing count size, while log-counts typically show a decreasing mean-variance trend.
-This function estimates the mean-variance trend for log-counts, then assigns a weight to each observation based on its predicted variance.
-The weights are then used in the linear modelling process to adjust for heteroscedasticity.
-
-In an experiment, a count value is observed for each tag in each sample. A tag-wise mean-variance trend is computed using lowess.
-The tag-wise mean is the mean log2 count with an offset of 0.5, across samples for a given tag.
-The tag-wise variance is the quarter-root-variance of normalized log2 counts per million values with an offset of 0.5, across samples for a given tag.
-Tags with zero counts across all samples are not included in the lowess fit. Optional normalization is performed using normalizeBetweenArrays.
-Using fitted values of log2 counts from a linear model fit by lmFit, variances from the mean-variance trend were interpolated for each observation.
-This was carried out by approxfun. Inverse variance weights can be used to correct for mean-variance trend in the count data.
-
-
-Author(s)
-
-Charity Law and Gordon Smyth
-
-References
-
-Law, CW (2013). Precision weights for gene expression analysis. PhD Thesis. University of Melbourne, Australia.
-
-Law, CW, Chen, Y, Shi, W, Smyth, GK (2013). Voom! Precision weights unlock linear model analysis tools for RNA-seq read counts.
-Technical Report 1 May 2013, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Reseach, Melbourne, Australia.
-http://www.statsci.org/smyth/pubs/VoomPreprint.pdf
-
-See Also
-
-A voom case study is given in the edgeR User's Guide.
-
-vooma is a similar function but for microarrays instead of RNA-seq.
-
-
-***old rant on changes to Bioconductor package variable names between versions***
-
-The edgeR authors made a small cosmetic change in the name of one important variable (from p.value to PValue) 
-breaking this and all other code that assumed the old name for this variable, 
-between edgeR2.4.4 and 2.4.6 (the version for R 2.14 as at the time of writing). 
-This means that all code using edgeR is sensitive to the version. I think this was a very unwise thing 
-to do because it wasted hours of my time to track down and will similarly cost other edgeR users dearly
-when their old scripts break. This tool currently now works with 2.4.6.
-
-**Note on prior.N**
-
-http://seqanswers.com/forums/showthread.php?t=5591 says:
-
-*prior.n*
-
-The value for prior.n determines the amount of smoothing of tagwise dispersions towards the common dispersion. 
-You can think of it as like a "weight" for the common value. (It is actually the weight for the common likelihood 
-in the weighted likelihood equation). The larger the value for prior.n, the more smoothing, i.e. the closer your 
-tagwise dispersion estimates will be to the common dispersion. If you use a prior.n of 1, then that gives the 
-common likelihood the weight of one observation.
-
-In answer to your question, it is a good thing to squeeze the tagwise dispersions towards a common value, 
-or else you will be using very unreliable estimates of the dispersion. I would not recommend using the value that 
-you obtained from estimateSmoothing()---this is far too small and would result in virtually no moderation 
-(squeezing) of the tagwise dispersions. How many samples do you have in your experiment? 
-What is the experimental design? If you have few samples (less than 6) then I would suggest a prior.n of at least 10. 
-If you have more samples, then the tagwise dispersion estimates will be more reliable, 
-so you could consider using a smaller prior.n, although I would hesitate to use a prior.n less than 5. 
-
-
-From Bioconductor Digest, Vol 118, Issue 5, Gordon writes:
-
-Dear Dorota,
-
-The important settings are prior.df and trend.
-
-prior.n and prior.df are related through prior.df = prior.n * residual.df,
-and your experiment has residual.df = 36 - 12 = 24.  So the old setting of
-prior.n=10 is equivalent for your data to prior.df = 240, a very large
-value.  Going the other way, the new setting of prior.df=10 is equivalent
-to prior.n=10/24.
-
-To recover old results with the current software you would use
-
-  estimateTagwiseDisp(object, prior.df=240, trend="none")
-
-To get the new default from old software you would use
-
-  estimateTagwiseDisp(object, prior.n=10/24, trend=TRUE)
-
-Actually the old trend method is equivalent to trend="loess" in the new
-software. You should use plotBCV(object) to see whether a trend is
-required.
-
-Note you could also use
-
-  prior.n = getPriorN(object, prior.df=10)
-
-to map between prior.df and prior.n.
-
-----
-
-**Attributions**
-
-edgeR - edgeR_ 
-
-VOOM/limma - limma_VOOM_ 
-
-DESeq2 - DESeq2_ for details
-
-See above for Bioconductor package documentation for packages exposed in Galaxy by this tool and app store package.
-
-Galaxy_ (that's what you are using right now!) for gluing everything together 
-
-Otherwise, all code and documentation comprising this tool was written by Ross Lazarus and is 
-licensed to you under the LGPL_ like other rgenetics artefacts
-
-.. _LGPL: http://www.gnu.org/copyleft/lesser.html
-.. _HTSeq: http://www-huber.embl.de/users/anders/HTSeq/doc/index.html
-.. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
-.. _DESeq2: http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
-.. _limma_VOOM: http://www.bioconductor.org/packages/release/bioc/html/limma.html
-.. _Galaxy: http://getgalaxy.org
-</help>
-
-</tool>
-
-

--- a/runme.R	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-bioclite = "http://bioconductor.org/biocLite.R"
-install.packages(c("stringr","gplots"),dependencies=T,repos=http://cran.us.r-project.org)
-source(bioclite)
-installme=c(edgeR,limma,DESeq,DESeq2)
-biocLite()
-biocLite(installme)
-quit(save="no")

--- a/test-data/edgeRtest1out.html	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,733 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> 
-        <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> 
-        <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> 
-        <meta name="generator" content="Galaxy rgToolFactory.py tool output - see http://g2.trac.bx.psu.edu/" /> 
-        <title></title> 
-        <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> 
-        </head> 
-        <body> 
-        <div class="toolFormBody"> 
-        
-<div class="infomessage">Galaxy Tool "DifferentialCounts" run at 07/08/2013 15:46:55</div><br/>
-<div class="toolFormTitle">DESeq2 images and outputs</div>
-(Click on a thumbnail image to download the corresponding original PDF image)<br/>
-<div><table class="simple" cellpadding="2" cellspacing="2">
-<tr>
-<td><a href="DESeq2_MA_plot.pdf"><img src="DESeq2_MA_plot.png" title="Click to download a PDF of DESeq2_MA_plot.pdf" hspace="5" width="400" 
-                           alt="Image called DESeq2_MA_plot.pdf"/></a></td>
-
-<td><a href="DESeq2_PCA_plot.pdf"><img src="DESeq2_PCA_plot.png" title="Click to download a PDF of DESeq2_PCA_plot.pdf" hspace="5" width="400" 
-                           alt="Image called DESeq2_PCA_plot.pdf"/></a></td>
-
-<td><a href="DESeq2_dispersion_estimates.pdf"><img src="DESeq2_dispersion_estimates.png" title="Click to download a PDF of DESeq2_dispersion_estimates.pdf" hspace="5" width="400" 
-                           alt="Image called DESeq2_dispersion_estimates.pdf"/></a></td>
-</tr>
-<tr>
-<td><a href="DESeq2_qqplot.pdf"><img src="DESeq2_qqplot.png" title="Click to download a PDF of DESeq2_qqplot.pdf" hspace="5" width="400" 
-                           alt="Image called DESeq2_qqplot.pdf"/></a></td>
-
-<td><a href="DESeq2_sample_distance_plot.pdf"><img src="DESeq2_sample_distance_plot.png" title="Click to download a PDF of DESeq2_sample_distance_plot.pdf" hspace="5" width="400" 
-                           alt="Image called DESeq2_sample_distance_plot.pdf"/></a></td>
-
-<td>&nbsp;</td>
-</tr></table></div>
-
-<div class="toolFormTitle">DESeq2 log output</div>
-
-<pre>
-
-# DESeq top 50
-
-                     Contig     baseMean log2FoldChange     lfcSE        pvalue          padj  NReads                                                                                               URL
-
-Mir192               Mir192 271352.97636       6.965264 0.2150593 4.096936e-230 4.576278e-227 2325567               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir192'>Mir192</a>
-
-Mir122a             Mir122a  10112.31117      10.312083 0.3292695 2.649323e-215 1.479647e-212   90428             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir122a'>Mir122a</a>
-
-Mir149               Mir149    810.35429      -6.911118 0.2341392 1.735537e-191 6.461982e-189    6164               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir149'>Mir149</a>
-
-Mir23a               Mir23a   1289.18043      -3.104086 0.1191688 1.424246e-149 3.977206e-147   10118               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23a'>Mir23a</a>
-
-Mir181d             Mir181d    275.22797      -3.581172 0.1778187  3.329371e-90  7.437816e-88    2139             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181d'>Mir181d</a>
-
-Mir204               Mir204    347.57397      -7.284200 0.3771119  3.959336e-83  7.370965e-81    2601               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir204'>Mir204</a>
-
-Mir23b               Mir23b   2028.55377      -2.065110 0.1085802  1.182361e-80  1.886711e-78   16387               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23b'>Mir23b</a>
-
-Mir27a               Mir27a   2788.72629      -3.016676 0.1688167  2.036708e-71  2.843754e-69   21886               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27a'>Mir27a</a>
-
-Mir195               Mir195    519.86200      -3.152795 0.1784796  7.838123e-70  9.727982e-68    3962               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir195'>Mir195</a>
-
-Mir194-2           Mir194-2    391.65678       5.222911 0.3099275  1.013490e-63  1.132068e-61    3570           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir194-2'>Mir194-2</a>
-
-Mir208b             Mir208b   1649.77924     -11.396172 0.6771238  1.464479e-63  1.487112e-61   14756             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208b'>Mir208b</a>
-
-Mir10b               Mir10b  27820.40551      -5.071453 0.3044889  2.754493e-62  2.563974e-60  197340               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir10b'>Mir10b</a>
-
-Mir181c             Mir181c   2765.96510      -3.660964 0.2275711  3.141153e-58  2.698975e-56   23605             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181c'>Mir181c</a>
-
-Mir208a             Mir208a    616.76981     -10.356524 0.6559217  3.688385e-56  2.942804e-54    4638             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208a'>Mir208a</a>
-
-Mir490               Mir490    220.99790      -8.059660 0.5142876  2.369067e-55  1.764165e-53    1741               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir490'>Mir490</a>
-
-Mir203               Mir203    772.92882       1.990849 0.1274099  4.877239e-55  3.404923e-53    6739               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir203'>Mir203</a>
-
-Mir215               Mir215    152.78082      -3.004380 0.1939090  3.822339e-54  2.511502e-52    1182               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir215'>Mir215</a>
-
-Dnm3os               Dnm3os    179.61643      -3.278392 0.2166491  9.922020e-52  6.157165e-50    1401               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnm3os'>Dnm3os</a>
-
-Mir214               Mir214    134.69038      -3.216444 0.2154916  2.230148e-50  1.311093e-48    1048               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir214'>Mir214</a>
-
-Mir21                 Mir21  26121.31011       2.963903 0.2008617  2.817434e-49  1.573537e-47  229120                 <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir21'>Mir21</a>
-
-Mir1948             Mir1948    263.89527       7.074045 0.4867225  7.374030e-48  3.922282e-46    2404             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1948'>Mir1948</a>
-
-Mir27b               Mir27b  76478.05753      -1.904653 0.1312889  1.088626e-47  5.527251e-46  625308               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27b'>Mir27b</a>
-
-Rabggtb             Rabggtb   2257.19195       1.988368 0.1401741  1.134862e-45  5.511484e-44   19535             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Rabggtb'>Rabggtb</a>
-
-Mir499               Mir499    712.45950     -10.577061 0.7528467  7.766408e-45  3.614616e-43    6527               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir499'>Mir499</a>
-
-Mir101b             Mir101b   6846.19683       3.791681 0.2809666  1.670548e-41  7.464007e-40   59019             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir101b'>Mir101b</a>
-
-Mir132               Mir132    106.46062      -2.797928 0.2083376  4.046163e-41  1.738294e-39     857               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir132'>Mir132</a>
-
-Mir143hg           Mir143hg 180217.77425      -2.169143 0.1685614  6.764675e-38  2.798571e-36 1407364           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir143hg'>Mir143hg</a>
-
-Mir143               Mir143 179219.35960      -2.170303 0.1696199  1.746403e-37  6.966899e-36 1399819               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir143'>Mir143</a>
-
-Mir155               Mir155     57.66182      -3.788079 0.3056585  2.845488e-35  1.096004e-33     463               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir155'>Mir155</a>
-
-Mir322               Mir322    899.53469      -3.126011 0.2622595  9.363374e-33  3.486296e-31    7074               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir322'>Mir322</a>
-
-Mir378               Mir378    483.21548      -2.994300 0.2577321  3.343457e-31  1.204723e-29    4075               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir378'>Mir378</a>
-
-Mir24-2             Mir24-2    424.48288      -2.712674 0.2361028  1.491830e-30  5.049617e-29    3470             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir24-2'>Mir24-2</a>
-
-Mir3074-2         Mir3074-2    424.48288      -2.712674 0.2361028  1.491830e-30  5.049617e-29    3470         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3074-2'>Mir3074-2</a>
-
-Mir199b             Mir199b     47.84725      -5.294373 0.4644474  4.215162e-30  1.384805e-28     370             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199b'>Mir199b</a>
-
-Mir802               Mir802    166.83414       8.816580 0.7782636  9.478527e-30  3.025004e-28    1514               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir802'>Mir802</a>
-
-Mir125b-2         Mir125b-2    493.08516      -2.919341 0.2631193  1.324797e-28  4.110551e-27    3837         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125b-2'>Mir125b-2</a>
-
-Mir301               Mir301    260.53406      -1.676984 0.1526772  4.570133e-28  1.379686e-26    2119               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir301'>Mir301</a>
-
-Snord104           Snord104   3851.90119       2.386573 0.2173857  4.847914e-28  1.425032e-26   33458           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord104'>Snord104</a>
-
-Mir150               Mir150    553.20599      -2.836881 0.2595088  8.127991e-28  2.327940e-26    4229               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir150'>Mir150</a>
-
-Mir148a             Mir148a 118994.46955       2.678852 0.2481801  3.675045e-27  1.026256e-25 1002397             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir148a'>Mir148a</a>
-
-5430416N02Rik 5430416N02Rik     62.15966       3.089960 0.2941123  8.101331e-26  2.207119e-24     564 <a href='http://www.genecards.org/index.php?path=/Search/keyword/5430416N02Rik'>5430416N02Rik</a>
-
-Mir193               Mir193     45.70861       4.991530 0.4814098  3.446492e-25  9.166027e-24     421               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir193'>Mir193</a>
-
-Mir3073             Mir3073     98.93199       8.208709 0.7944742  5.036320e-25  1.308272e-23     904             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3073'>Mir3073</a>
-
-Mir125b-1         Mir125b-1     79.01988      -3.020660 0.2937360  8.355633e-25  2.121191e-23     609         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125b-1'>Mir125b-1</a>
-
-2610203C20Rik 2610203C20Rik     79.17666      -3.023491 0.2948614  1.136165e-24  2.820214e-23     610 <a href='http://www.genecards.org/index.php?path=/Search/keyword/2610203C20Rik'>2610203C20Rik</a>
-
-Mir181a-1         Mir181a-1     59.53826      -3.151487 0.3211628  9.923707e-23  2.409735e-21     506         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181a-1'>Mir181a-1</a>
-
-Mir184               Mir184     32.23796      -4.865023 0.4962776  1.092606e-22  2.596683e-21     247               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir184'>Mir184</a>
-
-Mir199a-2         Mir199a-2     44.84878      -3.422216 0.3545647  4.826269e-22  1.123113e-20     352         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199a-2'>Mir199a-2</a>
-
-Snord91a           Snord91a    168.95251       2.700421 0.2835464  1.670595e-21  3.808275e-20    1437           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord91a'>Snord91a</a>
-
-Mir200b             Mir200b     87.13638       5.940702 0.6338554  7.094881e-21  1.584996e-19     888             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200b'>Mir200b</a>
-
-
-</pre>
-
-<div class="toolFormTitle">DifferentialCounts log output</div>
-
-<pre>
-
-Loading required package: gtools
-
-Loading required package: gdata
-
-gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
-
-gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
-
-Attaching package: ‘gdata’
-
-The following object is masked from ‘package:stats’:
-
-    nobs
-
-The following object is masked from ‘package:utils’:
-
-    object.size
-
-Loading required package: caTools
-
-Loading required package: grid
-
-Loading required package: KernSmooth
-
-KernSmooth 2.23 loaded
-
-Copyright M. P. Wand 1997-2009
-
-Loading required package: MASS
-
-Attaching package: ‘gplots’
-
-The following object is masked from ‘package:stats’:
-
-    lowess
-
-Loading required package: methods
-
-Loading required package: limma
-
-Loading required package: splines
-
-Loading required package: DESeq2
-
-Loading required package: GenomicRanges
-
-Loading required package: BiocGenerics
-
-Loading required package: parallel
-
-Attaching package: ‘BiocGenerics’
-
-The following object is masked from ‘package:parallel’:
-
-    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB
-
-The following object is masked from ‘package:gdata’:
-
-    combine
-
-The following object is masked from ‘package:stats’:
-
-    xtabs
-
-The following object is masked from ‘package:base’:
-
-    anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, sapply, setdiff, sort, table, tapply, union, unique, unlist
-
-Loading required package: IRanges
-
-Attaching package: ‘IRanges’
-
-The following object is masked from ‘package:gplots’:
-
-    space
-
-The following object is masked from ‘package:caTools’:
-
-    runmean
-
-The following object is masked from ‘package:gdata’:
-
-    trim
-
-Loading required package: Biobase
-
-Welcome to Bioconductor
-
-    Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
-
-Loading required package: lattice
-
-Loading required package: Rcpp
-
-Loading required package: RcppArmadillo
-
-Attaching package: ‘DESeq2’
-
-The following object is masked from ‘package:limma’:
-
-    plotMA
-
-gene-wise dispersion estimates
-
-mean-dispersion relationship
-
-final dispersion estimates
-
-you had estimated dispersions, replacing these
-
-gene-wise dispersion estimates
-
-mean-dispersion relationship
-
-final dispersion estimates
-
-you had estimated dispersions, replacing these
-
-gene-wise dispersion estimates
-
-mean-dispersion relationship
-
-final dispersion estimates
-
-Warning messages:
-
-1: In bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
-
-  Outlier (-Inf) in boxplot 1 is not drawn
-
-2: In bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
-
-  Outlier (-Inf) in boxplot 3 is not drawn
-
-3: In bxp(list(stats = c(-0.430723026286372, -0.127900608036896, 0.474159383291067,  :
-
-  some notches went outside hinges ('box'): maybe set notch=FALSE
-
-4: In par(defpar) : calling par(new=TRUE) with no plot
-
-
-</pre>
-
-<div class="toolFormTitle">VOOM images and outputs</div>
-(Click on a thumbnail image to download the corresponding original PDF image)<br/>
-<div><table class="simple" cellpadding="2" cellspacing="2">
-<tr>
-<td><a href="VOOM_mean_variance_plot.pdf"><img src="VOOM_mean_variance_plot.png" title="Click to download a PDF of VOOM_mean_variance_plot.pdf" hspace="5" width="400" 
-                           alt="Image called VOOM_mean_variance_plot.pdf"/></a></td>
-
-<td><a href="VOOM_qqplot.pdf"><img src="VOOM_qqplot.png" title="Click to download a PDF of VOOM_qqplot.pdf" hspace="5" width="400" 
-                           alt="Image called VOOM_qqplot.pdf"/></a></td>
-</tr>
-
-</table></div>
-
-<div class="toolFormTitle">VOOM log output</div>
-
-<pre>
-
-# VOOM top 50
-
-                         ID      logFC    AveExpr          t      P.Value    adj.P.Val         B  NReads                                                                                               URL
-
-Mir192               Mir192   6.948883 14.6763803  42.722954 2.301199e-16 2.625668e-13 27.266471 2325567               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir192'>Mir192</a>
-
-Mir208a             Mir208a -11.015018  3.9395538 -23.252407 1.118938e-12 6.383542e-10 17.208662    4638             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208a'>Mir208a</a>
-
-Mir122a             Mir122a  10.426125  8.1698641  21.722912 2.859682e-12 1.087633e-09 17.760171   90428             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir122a'>Mir122a</a>
-
-Mir149               Mir149  -7.030463  6.3160807 -20.883835 4.915491e-12 1.402144e-09 17.277609    6164               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir149'>Mir149</a>
-
-Mir208b             Mir208b -12.433228  4.6076218 -19.592458 1.179199e-11 2.690931e-09 15.683666   14756             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208b'>Mir208b</a>
-
-Mir10b               Mir10b  -5.130915 12.2628672 -18.242023 3.124991e-11 4.963978e-09 16.221503  197340               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir10b'>Mir10b</a>
-
-Mir143hg           Mir143hg  -2.249221 16.2444825 -18.082481 3.521739e-11 4.963978e-09 16.026695 1407364           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir143hg'>Mir143hg</a>
-
-Mir143               Mir143  -2.251067 16.2358599 -18.081481 3.524391e-11 4.963978e-09 16.026084 1399819               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir143'>Mir143</a>
-
-Mir499               Mir499 -11.567529  3.7874598 -17.942086 3.915496e-11 4.963978e-09 14.821741    6527               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir499'>Mir499</a>
-
-Mir802               Mir802   9.158434  2.9157675  17.316522 6.338616e-11 7.232360e-09 14.381577    1514               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir802'>Mir802</a>
-
-Mir3073             Mir3073   8.420542  2.5457189  16.702657 1.033066e-10 1.036045e-08 13.985845     904             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3073'>Mir3073</a>
-
-Mir148a             Mir148a   2.638213 15.4435820  16.548188 1.171186e-10 1.036045e-08 14.814792 1002397             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir148a'>Mir148a</a>
-
-Mir101b             Mir101b   3.765722 10.8508440  16.538566 1.180419e-10 1.036045e-08 14.900027   59019             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir101b'>Mir101b</a>
-
-Mir490               Mir490  -8.474378  3.7506957 -16.259650 1.484816e-10 1.210125e-08 13.424617    1741               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir490'>Mir490</a>
-
-Mir21                 Mir21   2.938537 13.1642917  15.375404 3.148335e-10 2.394833e-08 13.867698  229120                 <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir21'>Mir21</a>
-
-Mir181c             Mir181c  -3.742560  9.6295577 -15.242361 3.537063e-10 2.522368e-08 13.810405   23605             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181c'>Mir181c</a>
-
-Mir204               Mir204  -7.684425  4.7751735 -15.033484 4.254268e-10 2.855364e-08 12.822427    2601               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir204'>Mir204</a>
-
-Mir23a               Mir23a  -3.165768  8.7896592 -14.631179 6.110682e-10 3.873493e-08 13.269174   10118               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23a'>Mir23a</a>
-
-Mir181d             Mir181d  -3.636211  6.3713218 -14.317073 8.157508e-10 4.898798e-08 12.956333    2139             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181d'>Mir181d</a>
-
-Mir133b             Mir133b  -6.493549  1.2544862 -13.969968 1.129934e-09 6.446275e-08 11.982684     159             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir133b'>Mir133b</a>
-
-Mir27a               Mir27a  -3.106935  9.9255796 -13.838251 1.281011e-09 6.960160e-08 12.513086   21886               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27a'>Mir27a</a>
-
-Mir194-2           Mir194-2   5.264136  6.0897615  13.044012 2.792884e-09 1.448491e-07 11.715753    3570           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir194-2'>Mir194-2</a>
-
-Mir195               Mir195  -3.216595  7.4509350 -12.869478 3.332788e-09 1.653353e-07 11.587523    3962               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir195'>Mir195</a>
-
-Mir27b               Mir27b  -1.976376 15.0957731 -11.756036 1.082197e-08 5.144946e-07 10.127719  625308               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27b'>Mir27b</a>
-
-Mir378               Mir378  -3.097393  7.3832049 -11.684163 1.171371e-08 5.346138e-07 10.329692    4075               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir378'>Mir378</a>
-
-Snord104           Snord104   2.337374 10.6109024  11.495675 1.444482e-08 6.339052e-07 10.023395   33458           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord104'>Snord104</a>
-
-Mir1983             Mir1983  -5.895500  0.9931851 -11.445812 1.527548e-08 6.441605e-07  9.749260     101             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1983'>Mir1983</a>
-
-Mir322               Mir322  -3.296618  8.2153415 -11.415362 1.580762e-08 6.441605e-07 10.008472    7074               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir322'>Mir322</a>
-
-Mir200a             Mir200a   6.191561  1.7981309  11.322172 1.756229e-08 6.909853e-07  9.662295     264             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200a'>Mir200a</a>
-
-Mir215               Mir215  -3.045873  5.7544234 -11.148134 2.141822e-08 8.082459e-07  9.753268    1182               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir215'>Mir215</a>
-
-Dnm3os               Dnm3os  -3.363344  5.8607432 -11.092261 2.283960e-08 8.082459e-07  9.689496    1401               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnm3os'>Dnm3os</a>
-
-Mir182               Mir182   4.903995  7.1511683  11.074468 2.331304e-08 8.082459e-07  9.658842    7189               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir182'>Mir182</a>
-
-Mir181a-2         Mir181a-2  -3.048298  6.9414651 -11.072128 2.337609e-08 8.082459e-07  9.644017    2817         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181a-2'>Mir181a-2</a>
-
-Mir1948             Mir1948   7.195525  4.5513493  11.005492 2.524936e-08 8.473388e-07  9.341794    2404             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1948'>Mir1948</a>
-
-Mir214               Mir214  -3.280874  5.4784451 -10.768257 3.332555e-08 1.086413e-06  9.318504    1048               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir214'>Mir214</a>
-
-Mir153               Mir153  -5.963803  1.4386315 -10.727082 3.498742e-08 1.093990e-06  9.035569     140               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir153'>Mir153</a>
-
-Cyp3a25             Cyp3a25   6.318200  1.4888933  10.698226 3.620443e-08 1.093990e-06  9.024973     226             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Cyp3a25'>Cyp3a25</a>
-
-Gm5441               Gm5441  -5.982176  1.4484953 -10.692891 3.643436e-08 1.093990e-06  9.000362     142               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5441'>Gm5441</a>
-
-Mir125b-2         Mir125b-2  -3.077678  7.4316058 -10.446668 4.893073e-08 1.431538e-06  8.884250    3837         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125b-2'>Mir125b-2</a>
-
-Mir133a-1         Mir133a-1  -5.144671  0.5903264 -10.358205 5.447229e-08 1.553822e-06  8.575535      60         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir133a-1'>Mir133a-1</a>
-
-1110038B12Rik 1110038B12Rik   2.226702 10.8487089  10.194609 6.655312e-08 1.852125e-06  8.439308   37066 <a href='http://www.genecards.org/index.php?path=/Search/keyword/1110038B12Rik'>1110038B12Rik</a>
-
-Mir132               Mir132  -2.847559  5.3211839 -10.110952 7.380297e-08 2.004981e-06  8.531491     857               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir132'>Mir132</a>
-
-Rabggtb             Rabggtb   1.935779  9.9874171   9.928995 9.262821e-08 2.457879e-06  8.133384   19535             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Rabggtb'>Rabggtb</a>
-
-Mir504               Mir504  -5.256127  0.6221088  -9.892894 9.693595e-08 2.513725e-06  8.068853      69               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir504'>Mir504</a>
-
-Mir150               Mir150  -2.938531  7.6297870  -9.842102 1.033602e-07 2.620755e-06  8.116464    4229               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir150'>Mir150</a>
-
-Mir199b             Mir199b  -5.752816  2.8805143  -9.823920 1.057683e-07 2.623514e-06  7.979387     370             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199b'>Mir199b</a>
-
-Mir23b               Mir23b  -2.124129  9.8141190  -9.806316 1.081569e-07 2.625681e-06  7.979464   16387               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23b'>Mir23b</a>
-
-Mir24-2             Mir24-2  -2.833979  7.3083691  -9.767192 1.136724e-07 2.646944e-06  8.030550    3470             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir24-2'>Mir24-2</a>
-
-Mir3074-2         Mir3074-2  -2.833979  7.3083691  -9.767192 1.136724e-07 2.646944e-06  8.030550    3470         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3074-2'>Mir3074-2</a>
-
-Mir155               Mir155  -3.906600  3.9899000  -9.732173 1.188627e-07 2.712448e-06  8.046518     463               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir155'>Mir155</a>
-
-
-</pre>
-
-<div class="toolFormTitle">edgeR images and outputs</div>
-(Click on a thumbnail image to download the corresponding original PDF image)<br/>
-<div><table class="simple" cellpadding="2" cellspacing="2">
-<tr>
-<td><a href="edgeR_BCV_vs_abundance.pdf"><img src="edgeR_BCV_vs_abundance.png" title="Click to download a PDF of edgeR_BCV_vs_abundance.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_BCV_vs_abundance.pdf"/></a></td>
-
-<td><a href="edgeR_GoodnessofFit.pdf"><img src="edgeR_GoodnessofFit.png" title="Click to download a PDF of edgeR_GoodnessofFit.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_GoodnessofFit.pdf"/></a></td>
-
-<td><a href="edgeR_MDSplot.pdf"><img src="edgeR_MDSplot.png" title="Click to download a PDF of edgeR_MDSplot.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_MDSplot.pdf"/></a></td>
-</tr>
-<tr>
-<td><a href="edgeR_qqplot.pdf"><img src="edgeR_qqplot.png" title="Click to download a PDF of edgeR_qqplot.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_qqplot.pdf"/></a></td>
-
-<td><a href="edgeR_raw_norm_counts_box.pdf"><img src="edgeR_raw_norm_counts_box.png" title="Click to download a PDF of edgeR_raw_norm_counts_box.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_raw_norm_counts_box.pdf"/></a></td>
-
-<td><a href="edgeR_smearplot.pdf"><img src="edgeR_smearplot.png" title="Click to download a PDF of edgeR_smearplot.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_smearplot.pdf"/></a></td>
-</tr>
-<tr>
-<td><a href="edgeR_top_100_heatmap.pdf"><img src="edgeR_top_100_heatmap.png" title="Click to download a PDF of edgeR_top_100_heatmap.pdf" hspace="5" width="400" 
-                           alt="Image called edgeR_top_100_heatmap.pdf"/></a></td>
-
-<td>&nbsp;</td><td>&nbsp;</td>
-</tr></table></div>
-
-<div class="toolFormTitle">edgeR log output</div>
-
-<pre>
-
-[1] prior.df = 8
-
-[1] "No GLM fit outlier genes found\n"
-
-[1] Common Dispersion = 0.228651460998105 CV =  0.478175136323613 getPriorN =  3.33333333333333
-
-[1] heart liver
-
-[1] "Raw sample read totals 2443751,1644652,1682104,1806045,1440960,1341813,2888924,1428365"
-
-[1] raw contig counts by sample:
-
- liver_X11706Liv_CAAA liver_X11700Liv_ATTC liver_X11698Liv_ACTG liver_X11699Liv_ATGA heart_X11706He_AGTTC heart_X11699He_GGCTA heart_X11698He_TAGCT heart_X11700He_CTTGT
-
- Min.   :0.0043       Min.   :0.0043       Min.   :0.0043       Min.   :0.0043       Min.   :0.0043       Min.   :0.0043       Min.   :0.0043       Min.   :0.0043      
-
- 1st Qu.:0.3032       1st Qu.:0.0043       1st Qu.:0.3032       1st Qu.:0.0043       1st Qu.:0.0043       1st Qu.:0.0043       1st Qu.:0.0043       1st Qu.:0.0043      
-
- Median :0.7789       Median :0.6031       Median :0.6998       Median :0.6031       Median :0.4786       Median :0.4786       Median :0.4786       Median :0.4786      
-
- Mean   :1.0519       Mean   :1.0343       Mean   :0.9855       Mean   :0.9966       Mean   :0.9210       Mean   :0.9428       Mean   :1.0205       Mean   :0.9753      
-
- 3rd Qu.:1.5410       3rd Qu.:1.6335       3rd Qu.:1.4473       3rd Qu.:1.5534       3rd Qu.:1.5770       3rd Qu.:1.5855       3rd Qu.:1.7161       3rd Qu.:1.6022      
-
- Max.   :5.8209       Max.   :5.6905       Max.   :5.7999       Max.   :5.7215       Max.   :5.3609       Max.   :5.3589       Max.   :5.6967       Max.   :5.3702      
-
- NA's   :650          NA's   :969          NA's   :664          NA's   :886          NA's   :902          NA's   :957          NA's   :821          NA's   :950         
-
-[1] normalised contig counts by sample:
-
- liver_X11706Liv_CAAA liver_X11700Liv_ATTC liver_X11698Liv_ACTG liver_X11699Liv_ATGA heart_X11706He_AGTTC heart_X11699He_GGCTA heart_X11698He_TAGCT heart_X11700He_CTTGT
-
- Min.   :-Inf         Min.   :-Inf         Min.   :-Inf         Min.   :-Inf         Min.   :-Inf         Min.   :-Inf         Min.   :-Inf         Min.   :-Inf        
-
- 1st Qu.:   0         1st Qu.:-Inf         1st Qu.:   0         1st Qu.:-Inf         1st Qu.:-Inf         1st Qu.:-Inf         1st Qu.:-Inf         1st Qu.:-Inf        
-
- Median :   0         Median :   0         Median :   0         Median :   0         Median :   0         Median :   0         Median :   0         Median :   0        
-
- Mean   :-Inf         Mean   :-Inf         Mean   :-Inf         Mean   :-Inf         Mean   :-Inf         Mean   :-Inf         Mean   :-Inf         Mean   :-Inf        
-
- 3rd Qu.:   1         3rd Qu.:   1         3rd Qu.:   1         3rd Qu.:   1         3rd Qu.:   1         3rd Qu.:   1         3rd Qu.:   1         3rd Qu.:   1        
-
- Max.   :   6         Max.   :   6         Max.   :   6         Max.   :   5         Max.   :   5         Max.   :   5         Max.   :   6         Max.   :   5        
-
-[1] Using ncol rawrs= 8
-
-[1] # edgeR Top tags\n
-
-                       Name      logFC    logCPM        LR        PValue   adj.p.value Dispersion totreads                                                                                               URL
-
-Mir208a             Mir208a -11.840751  8.465017 594.16946 3.104543e-131 3.542284e-128 0.05171220     4638             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208a'>Mir208a</a>
-
-Mir149               Mir149  -7.008984  8.861767 484.30321 2.473909e-107 1.411365e-104 0.04959937     6164               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir149'>Mir149</a>
-
-Mir208b             Mir208b -13.291635  9.905945 417.69758  7.737463e-93  2.942815e-90 0.10508096    14756             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208b'>Mir208b</a>
-
-Mir122a             Mir122a  10.514683 12.478088 415.17429  2.740525e-92  7.817349e-90 0.10803882    90428             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir122a'>Mir122a</a>
-
-Mir204               Mir204  -7.498162  7.634507 341.30678  3.313430e-76  7.561247e-74 0.06907958     2601               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir204'>Mir204</a>
-
-Mir499               Mir499 -13.577454  8.700078 325.79199  7.930755e-73  1.508165e-70 0.12042284     6527               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir499'>Mir499</a>
-
-Mir490               Mir490  -8.534394  6.991023 303.17184  6.710366e-68  1.093790e-65 0.07949711     1741               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir490'>Mir490</a>
-
-Mir192               Mir192   6.953853 17.169364 217.22867  3.638307e-49  5.189135e-47 0.12700995  2325567               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir192'>Mir192</a>
-
-Mir802               Mir802  11.440805  6.593380 212.88059  3.231644e-48  4.097007e-46 0.12273671     1514               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir802'>Mir802</a>
-
-Mir1948             Mir1948   7.418142  7.252734 195.66958  1.840248e-44  2.099723e-42 0.12060221     2404             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1948'>Mir1948</a>
-
-Mir194-2           Mir194-2   5.298950  7.811522 191.85588  1.250960e-43  1.297587e-41 0.08670751     3570           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir194-2'>Mir194-2</a>
-
-Mir23a               Mir23a  -3.153807  9.529402 177.53185  1.676248e-40  1.593833e-38 0.04442763    10118               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23a'>Mir23a</a>
-
-Mir181c             Mir181c  -3.767686 10.639598 169.87390  7.883295e-39  6.919107e-37 0.06368883    23605             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181c'>Mir181c</a>
-
-Mir3073             Mir3073  10.686337  5.859950 164.86740  9.778593e-38  7.969554e-36 0.14069249      904             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3073'>Mir3073</a>
-
-Mir181d             Mir181d  -3.643963  7.300371 162.18591  3.767663e-37  2.865936e-35 0.05729574     2139             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181d'>Mir181d</a>
-
-Mir195               Mir195  -3.203683  8.215089 150.20548  1.563314e-34  1.114838e-32 0.05235020     3962               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir195'>Mir195</a>
-
-Mir10b               Mir10b  -5.182616 13.946466 147.24793  6.926819e-34  4.649118e-32 0.12268790   197340               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir10b'>Mir10b</a>
-
-Mir101b             Mir101b   3.759962 11.863187 136.31359  1.703812e-31  1.080028e-29 0.07961343    59019             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir101b'>Mir101b</a>
-
-Mir378               Mir378  -3.115599  8.119617 126.76408  2.092233e-29  1.256441e-27 0.05942391     4075               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir378'>Mir378</a>
-
-Mir27a               Mir27a  -3.064687 10.642480 124.98911  5.117477e-29  2.919520e-27 0.06113852    21886               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27a'>Mir27a</a>
-
-Mir182               Mir182   5.057509  8.846381 123.17765  1.275060e-28  6.927826e-27 0.13653707     7189               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir182'>Mir182</a>
-
-Mir322               Mir322  -3.194159  9.012888 107.34926  3.732413e-25  1.935765e-23 0.07536483     7074               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir322'>Mir322</a>
-
-Mir199b             Mir199b  -5.520119  4.792610 102.10724  5.259607e-24  2.609223e-22 0.13417024      370             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199b'>Mir199b</a>
-
-Mir181a-2         Mir181a-2  -3.000177  7.637692 101.38361  7.578821e-24  3.603098e-22 0.06896654     2817         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181a-2'>Mir181a-2</a>
-
-Mir125b-2         Mir125b-2  -2.987759  8.144514  91.72544  9.957640e-22  4.488356e-20 0.07737381     3837         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125b-2'>Mir125b-2</a>
-
-Dnm3os               Dnm3os  -3.331215  6.686950  91.67250  1.022763e-21  4.488356e-20 0.08810497     1401               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnm3os'>Dnm3os</a>
-
-Mir184               Mir184  -5.111350  4.234160  84.35542  4.133639e-20  1.686711e-18 0.13502324      247               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir184'>Mir184</a>
-
-Mir215               Mir215  -3.058208  6.447966  84.35278  4.139167e-20  1.686711e-18 0.08138517     1182               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir215'>Mir215</a>
-
-Mir133b             Mir133b  -8.383611  3.584760  83.96681  5.031517e-20  1.960318e-18 0.17482280      159             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir133b'>Mir133b</a>
-
-Mir150               Mir150  -2.883446  8.307765  83.91918  5.154210e-20  1.960318e-18 0.08008123     4229               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir150'>Mir150</a>
-
-Mir3074-2         Mir3074-2  -2.778308  7.935651  83.74839  5.619282e-20  2.040616e-18 0.07424646     3470         <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3074-2'>Mir3074-2</a>
-
-Mir24-2             Mir24-2  -2.778307  7.935651  83.71222  5.723024e-20  2.040616e-18 0.07427992     3470             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir24-2'>Mir24-2</a>
-
-Mir193               Mir193   5.176579  4.801090  83.19222  7.445011e-20  2.574169e-18 0.14794861      421               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir193'>Mir193</a>
-
-Scarna17           Scarna17   2.182159  9.244479  81.91330  1.421894e-19  4.771710e-18 0.04982909     9224           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna17'>Scarna17</a>
-
-Mir214               Mir214  -3.271172  6.271755  80.43948  2.997458e-19  9.771712e-18 0.09566584     1048               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir214'>Mir214</a>
-
-Snord104           Snord104   2.330488 11.053611  79.50529  4.809369e-19  1.524303e-17 0.05915990    33458           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord104'>Snord104</a>
-
-Mir200a             Mir200a   7.201555  4.139422  77.35503  1.428304e-18  4.365755e-17 0.19287764      264             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200a'>Mir200a</a>
-
-Mir200b             Mir200b   6.525423  5.752604  77.31985  1.453976e-18  4.365755e-17 0.26237966      888             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200b'>Mir200b</a>
-
-Mir21                 Mir21   2.923147 13.825255  75.51798  3.620938e-18  1.059357e-16 0.09395834   229120                 <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir21'>Mir21</a>
-
-Mir203               Mir203   1.956427  8.767610  75.17870  4.299815e-18  1.226522e-16 0.04381710     6739               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir203'>Mir203</a>
-
-Mir155               Mir155  -3.886731  5.068563  73.81316  8.587210e-18  2.389758e-16 0.12522673      463               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir155'>Mir155</a>
-
-Cyp3a25             Cyp3a25   8.681501  3.972085  72.29680  1.851471e-17  5.029829e-16 0.23125383      226             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Cyp3a25'>Cyp3a25</a>
-
-Rabggtb             Rabggtb   1.934093 10.298211  72.02043  2.129809e-17  5.651422e-16 0.04596646    19535             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Rabggtb'>Rabggtb</a>
-
-Mir23b               Mir23b  -2.100584 10.184110  71.44225  2.854935e-17  7.403367e-16 0.05416378    16387               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23b'>Mir23b</a>
-
-Snord52             Snord52   2.207491 10.217554  71.27974  3.100027e-17  7.860292e-16 0.05941483    18059             <a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord52'>Snord52</a>
-
-Gm5441               Gm5441  -6.881248  3.538457  70.05615  5.764004e-17  1.429724e-15 0.20097284      142               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5441'>Gm5441</a>
-
-Mir153               Mir153  -6.857671  3.517446  69.37600  8.137282e-17  1.975455e-15 0.20158808      140               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir153'>Mir153</a>
-
-Mir132               Mir132  -2.858294  5.938312  64.52507  9.531204e-16  2.265647e-14 0.09274248      857               <a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir132'>Mir132</a>
-
-1110038B12Rik 1110038B12Rik   2.195962 11.253090  62.92015  2.152583e-15  5.012443e-14 0.06712174    37066 <a href='http://www.genecards.org/index.php?path=/Search/keyword/1110038B12Rik'>1110038B12Rik</a>
-
-Snord91a           Snord91a   2.654072  6.557504  62.40549  2.795431e-15  6.379174e-14 0.08637410     1437           <a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord91a'>Snord91a</a>
-
-[1] # 416 tags significant at adj p= 0.05
-
-
-</pre>
-
-<div class="toolFormTitle">Other images and outputs</div>
-(Click on a thumbnail image to download the corresponding original PDF image)<br/>
-<div><table class="simple" cellpadding="2" cellspacing="2">
-<tr>
-<td><a href="Filtering_rowsum_bar_charts.pdf"><img src="Filtering_rowsum_bar_charts.png" title="Click to download a PDF of Filtering_rowsum_bar_charts.pdf" hspace="5" width="400" 
-                           alt="Image called Filtering_rowsum_bar_charts.pdf"/></a></td>
-
-<td><a href="Venn_significant_genes_overlap.pdf"><img src="Venn_significant_genes_overlap.png" title="Click to download a PDF of Venn_significant_genes_overlap.pdf" hspace="5" width="400" 
-                           alt="Image called Venn_significant_genes_overlap.pdf"/></a></td>
-</tr>
-<tr>
-<td><a href="sample_counts_histogram.pdf"><img src="sample_counts_histogram.png" title="Click to download a PDF of sample_counts_histogram.pdf" hspace="5" width="400" 
-                           alt="Image called sample_counts_histogram.pdf"/></a></td>
-
-<td>&nbsp;</td>
-</tr></table></div>
-
-<div class="toolFormTitle">Other log output</div>
-
-<pre>
-
-## Toolfactory generated command line = Rscript - None None
-
-Got TCols=1 5 6 7; CCols=2 3 4 8
-
-[1] # Quantiles for non-zero row counts:
-
-       0%       10%       20%       30%       40%       50%       60%       70%       80%       90%      100% 
-
-      1.0       1.0       2.0       3.0       4.0       8.0      13.0      24.0      86.6     753.0 2325567.0 
-
-[1] Read 3242 contigs. Removed 1494 with no reads. After filtering at count quantile =0.3, there are 1141 contigs
-
-[1] "@@ using genecards substitution for urls"
-
-[1] # urls
-
-[1] <a href='http://www.genecards.org/index.php?path=/Search/keyword/0610005C13Rik'>0610005C13Rik</a> <a href='http://www.genecards.org/index.php?path=/Search/keyword/0610007N19Rik'>0610007N19Rik</a> <a href='http://www.genecards.org/index.php?path=/Search/keyword/0610008F07Rik'>0610008F07Rik</a> <a href='http://www.genecards.org/index.php?path=/Search/keyword/0610009L18Rik'>0610009L18Rik</a> <a href='http://www.genecards.org/index.php?path=/Search/keyword/0610012G03Rik'>0610012G03Rik</a>
-
-[6] <a href='http://www.genecards.org/index.php?path=/Search/keyword/0610031O16Rik'>0610031O16Rik</a>
-
-[1] # Total low count contigs per sample =  170,67,203,86,145,111,155,120
-
-[1] Using samples: liver_X11706Liv_CAAAAG_L003_R1_001_trimmed.fastq_bwa.sam.bam,liver_X11700Liv_ATTCCT_L003_R1_001_trimmed.fastq_bwa.sam.bam,liver_X11698Liv_ACTGAT_L003_R1_001_trimmed.fastq_bwa.sam.bam,liver_X11699Liv_ATGAGC_L003_R1_001_trimmed.fastq_bwa.sam.bam,heart_X11706He_AGTTCC_L001_R1_001_trimmed.fastq_bwa.sam.bam,heart_X11699He_GGCTAC_L001_R1_001_trimmed.fastq_bwa.sam.bam,heart_X11698He_TAGCTT_L001_R1_001_trimmed.fastq_bwa.sam.bam,heart_X11700He_CTTGTA_L001_R1_001_trimmed.fastq_bwa.sam.bam
-
-[1] Using design matrix:
-
-  (Intercept) groupliver
-
-1           1          1
-
-2           1          1
-
-3           1          1
-
-4           1          1
-
-5           1          0
-
-6           1          0
-
-7           1          0
-
-8           1          0
-
-attr(,"assign")
-
-[1] 0 1
-
-attr(,"contrasts")
-
-attr(,"contrasts")$group
-
-[1] contr.treatment
-
-R version 3.0.1 (2013-05-16)
-
-Platform: x86_64-unknown-linux-gnu (64-bit)
-
-locale:
-
- [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C               LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8     LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8    LC_PAPER=C                 LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       
-
-attached base packages:
-
- [1] parallel  splines   methods   grid      stats     graphics  grDevices utils     datasets  base     
-
-other attached packages:
-
- [1] RColorBrewer_1.0-5      DESeq2_1.0.18           RcppArmadillo_0.3.900.7 Rcpp_0.10.4             lattice_0.20-15         Biobase_2.20.1          GenomicRanges_1.12.4    IRanges_1.18.2          BiocGenerics_0.6.0      edgeR_3.2.4             limma_3.16.7            gplots_2.11.3           MASS_7.3-28             KernSmooth_2.23-10      caTools_1.14            gdata_2.13.2            gtools_3.0.0            stringr_0.6.2          
-
-loaded via a namespace (and not attached):
-
- [1] annotate_1.38.0      AnnotationDbi_1.22.6 bitops_1.0-5         DBI_0.2-7            genefilter_1.42.0    locfit_1.5-9.1       RSQLite_0.11.4       stats4_3.0.1         survival_2.37-4      XML_3.98-1.1         xtable_1.7-1        
-
-
-</pre>
-
-<div class="toolFormTitle">All output files available for downloading</div>
-
-<div><table class="colored" cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr>
-
-<tr><td><a href="DESeq2.log">DESeq2.log</a></td><td>10.0 KB</td></tr>
-<tr class="odd_row"><td><a href="DESeq2_MA_plot.pdf">DESeq2_MA_plot.pdf</a></td><td>14.7 KB</td></tr>
-<tr><td><a href="DESeq2_PCA_plot.pdf">DESeq2_PCA_plot.pdf</a></td><td>4.9 KB</td></tr>
-<tr class="odd_row"><td><a href="DESeq2_dispersion_estimates.pdf">DESeq2_dispersion_estimates.pdf</a></td><td>188.4 KB</td></tr>
-<tr><td><a href="DESeq2_qqplot.pdf">DESeq2_qqplot.pdf</a></td><td>14.4 KB</td></tr>
-<tr class="odd_row"><td><a href="DESeq2_sample_distance_plot.pdf">DESeq2_sample_distance_plot.pdf</a></td><td>9.5 KB</td></tr>
-<tr><td><a href="DifferentialCounts.Rscript">DifferentialCounts.Rscript</a></td><td>27.1 KB</td></tr>
-<tr class="odd_row"><td><a href="DifferentialCounts_error.log">DifferentialCounts_error.log</a></td><td>3.1 KB</td></tr>
-<tr><td><a href="DifferentialCounts_runner.log">DifferentialCounts_runner.log</a></td><td>3.2 KB</td></tr>
-<tr class="odd_row"><td><a href="Filtering_rowsum_bar_charts.pdf">Filtering_rowsum_bar_charts.pdf</a></td><td>6.3 KB</td></tr>
-<tr><td><a href="VOOM.log">VOOM.log</a></td><td>10.1 KB</td></tr>
-<tr class="odd_row"><td><a href="VOOM_mean_variance_plot.pdf">VOOM_mean_variance_plot.pdf</a></td><td>16.7 KB</td></tr>
-<tr><td><a href="VOOM_qqplot.pdf">VOOM_qqplot.pdf</a></td><td>17.6 KB</td></tr>
-<tr class="odd_row"><td><a href="Venn_significant_genes_overlap.pdf">Venn_significant_genes_overlap.pdf</a></td><td>9.7 KB</td></tr>
-<tr><td><a href="edgeR.log">edgeR.log</a></td><td>13.1 KB</td></tr>
-<tr class="odd_row"><td><a href="edgeR_BCV_vs_abundance.pdf">edgeR_BCV_vs_abundance.pdf</a></td><td>17.4 KB</td></tr>
-<tr><td><a href="edgeR_GoodnessofFit.pdf">edgeR_GoodnessofFit.pdf</a></td><td>13.1 KB</td></tr>
-<tr class="odd_row"><td><a href="edgeR_MDSplot.pdf">edgeR_MDSplot.pdf</a></td><td>4.9 KB</td></tr>
-<tr><td><a href="edgeR_qqplot.pdf">edgeR_qqplot.pdf</a></td><td>15.2 KB</td></tr>
-<tr class="odd_row"><td><a href="edgeR_raw_norm_counts_box.pdf">edgeR_raw_norm_counts_box.pdf</a></td><td>7.8 KB</td></tr>
-<tr><td><a href="edgeR_smearplot.pdf">edgeR_smearplot.pdf</a></td><td>16.6 KB</td></tr>
-<tr class="odd_row"><td><a href="edgeR_top_100_heatmap.pdf">edgeR_top_100_heatmap.pdf</a></td><td>11.3 KB</td></tr>
-<tr><td><a href="sample_counts_histogram.pdf">sample_counts_histogram.pdf</a></td><td>11.0 KB</td></tr>
-</table></div><br/>
-</div></body></html>
-

--- a/test-data/edgeRtest1out.xls	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1142 +0,0 @@
-ID	logFC	AveExpr	t	P.Value	adj.P.Val	B	NReads	URL
-Mir192	6.94888256843679	14.6763802609023	42.7229535356942	2.30119906424271e-16	2.62566813230094e-13	27.2664713266936	2325567	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir192'>Mir192</a>
-Mir208a	-11.0150177152075	3.93955375669227	-23.2524066836307	1.11893807599952e-12	6.38354172357727e-10	17.2086622097974	4638	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208a'>Mir208a</a>
-Mir122a	10.4261254701779	8.16986409392255	21.7229119192922	2.85968233611017e-12	1.08763251516723e-09	17.760171141852	90428	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir122a'>Mir122a</a>
-Mir149	-7.03046258655617	6.31608073609863	-20.8838348040628	4.91549082404237e-12	1.40214375755809e-09	17.2776088871455	6164	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir149'>Mir149</a>
-Mir208b	-12.4332279840446	4.60762179736006	-19.5924575126382	1.17919871718875e-11	2.69093147262473e-09	15.6836663826186	14756	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir208b'>Mir208b</a>
-Mir10b	-5.1309149063532	12.2628671946242	-18.2420234752943	3.12499057505143e-11	4.96397841614262e-09	16.2215027882858	197340	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir10b'>Mir10b</a>
-Mir143hg	-2.24922058313374	16.2444825488726	-18.0824813146443	3.52173903971276e-11	4.96397841614262e-09	16.0266951625541	1407364	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir143hg'>Mir143hg</a>
-Mir143	-2.25106712131643	16.235859869169	-18.0814805993441	3.524391092512e-11	4.96397841614262e-09	16.0260836456534	1399819	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir143'>Mir143</a>
-Mir499	-11.5675289490546	3.78745976580796	-17.9420857279689	3.91549568319751e-11	4.96397841614262e-09	14.8217405828874	6527	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir499'>Mir499</a>
-Mir802	9.15843445824816	2.91576747878654	17.3165224121399	6.33861560587965e-11	7.23236040630868e-09	14.381577240531	1514	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir802'>Mir802</a>
-Mir3073	8.42054159318439	2.54571889776166	16.7026571721381	1.03306635740721e-10	1.03604453339228e-08	13.9858447292853	904	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3073'>Mir3073</a>
-Mir148a	2.63821345578617	15.4435819751152	16.5481882215215	1.17118649515038e-10	1.03604453339228e-08	14.8147917664862	1002397	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir148a'>Mir148a</a>
-Mir101b	3.76572195114225	10.8508440499081	16.5385659719288	1.1804188373444e-10	1.03604453339228e-08	14.9000274171241	59019	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir101b'>Mir101b</a>
-Mir490	-8.47437764634465	3.75069567634692	-16.2596504905533	1.48481644820999e-10	1.21012540529114e-08	13.4246171016517	1741	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir490'>Mir490</a>
-Mir21	2.93853744034991	13.1642916950886	15.3754036511693	3.14833456057776e-10	2.39483315574615e-08	13.8676979022068	229120	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir21'>Mir21</a>
-Mir181c	-3.74256009957124	9.62955774646065	-15.2423608550805	3.53706264458683e-10	2.52236779842098e-08	13.8104046176901	23605	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181c'>Mir181c</a>
-Mir204	-7.68442507149438	4.77517348536933	-15.0334839919296	4.2542677795722e-10	2.85536443323052e-08	12.8224274879526	2601	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir204'>Mir204</a>
-Mir23a	-3.16576837850821	8.78965917558611	-14.6311785109623	6.11068192724496e-10	3.87349337721472e-08	13.2691736804205	10118	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23a'>Mir23a</a>
-Mir181d	-3.63621106402109	6.37132182424908	-14.3170733565449	8.15750840848868e-10	4.89879847057136e-08	12.9563328312209	2139	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181d'>Mir181d</a>
-Mir133b	-6.49354876170712	1.25448620431148	-13.969968060601	1.12993427319653e-09	6.44627502858619e-08	11.9826837063041	159	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir133b'>Mir133b</a>
-Mir27a	-3.10693537246128	9.92557960348829	-13.8382510839158	1.28101104196848e-09	6.96015999469543e-08	12.5130856443239	21886	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27a'>Mir27a</a>
-Mir194-2	5.26413595786074	6.08976151689046	13.0440120203829	2.79288399641768e-09	1.44849119996026e-07	11.7157527118771	3570	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir194-2'>Mir194-2</a>
-Mir195	-3.21659545049586	7.4509349905835	-12.869478368273	3.33278798407795e-09	1.65335264775345e-07	11.5875227405737	3962	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir195'>Mir195</a>
-Mir27b	-1.97637614533106	15.0957731023791	-11.75603589654	1.08219717999805e-08	5.14494575990741e-07	10.1277185662145	625308	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir27b'>Mir27b</a>
-Mir378	-3.09739319841142	7.38320489393809	-11.6841625470748	1.17137125863851e-08	5.34613842442616e-07	10.3296922348831	4075	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir378'>Mir378</a>
-Snord104	2.33737428989677	10.6109023861403	11.4956750870273	1.44448164322638e-08	6.33905213431269e-07	10.0233949189609	33458	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord104'>Snord104</a>
-Mir1983	-5.89550024150745	0.993185099223749	-11.4458119994178	1.52754786535047e-08	6.44160462853232e-07	9.74926029381244	101	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1983'>Mir1983</a>
-Mir322	-3.29661750880005	8.21534154356388	-11.4153616003567	1.58076187203247e-08	6.44160462853232e-07	10.0084716002011	7074	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir322'>Mir322</a>
-Mir200a	6.19156065085543	1.79813092499896	11.3221723123067	1.75622912046568e-08	6.9098531946598e-07	9.66229453831667	264	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200a'>Mir200a</a>
-Mir215	-3.04587333807051	5.75442336214621	-11.1481336257529	2.14182153707674e-08	8.08245865886245e-07	9.75326755116029	1182	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir215'>Mir215</a>
-Dnm3os	-3.36334357719079	5.86074322417943	-11.0922610835813	2.28395969947309e-08	8.08245865886245e-07	9.68949616901383	1401	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnm3os'>Dnm3os</a>
-Mir182	4.90399541739044	7.1511683493624	11.0744681203078	2.33130367310143e-08	8.08245865886245e-07	9.65884218207857	7189	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir182'>Mir182</a>
-Mir181a-2	-3.04829832099813	6.94146510070354	-11.0721276255975	2.33760855164295e-08	8.08245865886245e-07	9.64401697815694	2817	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181a-2'>Mir181a-2</a>
-Mir1948	7.19552540631629	4.5513492833967	11.0054920626234	2.52493600829575e-08	8.47338819254543e-07	9.34179361673467	2404	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1948'>Mir1948</a>
-Mir214	-3.28087400431203	5.47844506177362	-10.7682572190636	3.3325545851092e-08	1.0864127947456e-06	9.3185039394887	1048	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir214'>Mir214</a>
-Mir153	-5.9638030672045	1.43863148956561	-10.7270821099311	3.49874201497232e-08	1.09398957489501e-06	9.03556928822473	140	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir153'>Mir153</a>
-Cyp3a25	6.3181999278218	1.48889330889732	10.698226339624	3.62044305804168e-08	1.09398957489501e-06	9.02497280953977	226	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cyp3a25'>Cyp3a25</a>
-Gm5441	-5.98217559924296	1.44849534030207	-10.6928905219357	3.64343591989574e-08	1.09398957489501e-06	9.00036161342169	142	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5441'>Gm5441</a>
-Mir125b-2	-3.07767777869034	7.43160584496732	-10.4466676018996	4.89307304174606e-08	1.43153752323904e-06	8.88425047860251	3837	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125b-2'>Mir125b-2</a>
-Mir133a-1	-5.1446707114636	0.590326422018506	-10.3582048674166	5.44722862183524e-08	1.5538219643785e-06	8.57553468686339	60	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir133a-1'>Mir133a-1</a>
-1110038B12Rik	2.2267024913641	10.8487089345135	10.1946092089644	6.6553123680318e-08	1.85212473461568e-06	8.43930767784171	37066	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1110038B12Rik'>1110038B12Rik</a>
-Mir132	-2.84755882904953	5.32118389129247	-10.1109518209472	7.38029688527407e-08	2.00498065383279e-06	8.53149092529729	857	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir132'>Mir132</a>
-Rabggtb	1.93577875106629	9.98741711657765	9.92899544482161	9.26282059254969e-08	2.45787867351144e-06	8.13338404178509	19535	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rabggtb'>Rabggtb</a>
-Mir504	-5.25612736011945	0.622108812393712	-9.89289391617729	9.69359452558378e-08	2.51372530765707e-06	8.06885345567596	69	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir504'>Mir504</a>
-Mir150	-2.93853062743745	7.62978695478889	-9.84210172881295	1.0336018288322e-07	2.62075485932786e-06	8.11646444295523	4229	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir150'>Mir150</a>
-Mir199b	-5.75281586680568	2.88051428778536	-9.82392040215114	1.05768314120536e-07	2.62351405242461e-06	7.97938664656761	370	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199b'>Mir199b</a>
-Mir23b	-2.12412853458823	9.81411903779331	-9.80631552439508	1.08156895246613e-07	2.62568122290182e-06	7.97946421769546	16387	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir23b'>Mir23b</a>
-Mir24-2	-2.83397931671342	7.30836912335631	-9.76719188905173	1.13672435494913e-07	2.64694385509584e-06	8.03055035937719	3470	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir24-2'>Mir24-2</a>
-Mir3074-2	-2.83397931671342	7.30836912335631	-9.76719188905173	1.13672435494913e-07	2.64694385509584e-06	8.03055035937719	3470	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3074-2'>Mir3074-2</a>
-Mir155	-3.90660012470502	3.98990000150695	-9.73217278591154	1.18862734970705e-07	2.71244761203149e-06	8.04651834419983	463	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir155'>Mir155</a>
-Snord52	2.24297808473649	9.80695706696893	9.65508926768283	1.31194241930095e-07	2.93514960867135e-06	7.78317356265822	18059	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord52'>Snord52</a>
-Scarna17	2.22135685073443	8.84690751573681	9.60031550237377	1.4077767610154e-07	3.08898708522803e-06	7.75116302071276	9224	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna17'>Scarna17</a>
-Mir201	-5.13478218238105	0.574435171385817	-9.36375298852343	1.91556946938131e-07	4.12389578219637e-06	7.45101629313275	63	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir201'>Mir201</a>
-Mir184	-5.19740389169544	2.57741455998865	-9.28503096123923	2.12504578894189e-07	4.42570763295992e-06	7.34294491810118	247	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir184'>Mir184</a>
-Snord91a	2.64601724328653	5.9737770599439	9.28208610647144	2.1333384733812e-07	4.42570763295992e-06	7.45176303063652	1437	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord91a'>Snord91a</a>
-Mir193	4.93970055277848	3.14663535122407	9.21323530535893	2.33732739541295e-07	4.76230456815389e-06	7.28752724029761	421	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir193'>Mir193</a>
-Mir470	5.07947201153691	1.71052510073336	8.84181308472679	3.85901653714362e-07	7.72480327873838e-06	6.83971839651152	157	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir470'>Mir470</a>
-0610031O16Rik	4.84298796174609	0.739739561937192	8.8004727262221	4.08431072700958e-07	8.03482506813436e-06	6.77016207746292	78	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610031O16Rik'>0610031O16Rik</a>
-Mir203	1.9396775595845	8.44497102033975	8.70156015908293	4.6818189744087e-07	9.05416177932259e-06	6.53224466632053	6739	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir203'>Mir203</a>
-1810019D21Rik	5.37088028736873	1.02158093294187	8.63951664435106	5.10331246821015e-07	9.70479921037964e-06	6.58253399607689	117	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810019D21Rik'>1810019D21Rik</a>
-D7Ertd143e	4.74135480360802	0.690096187370941	8.59182875086527	5.45451616539556e-07	1.02026277782235e-05	6.49996146777963	73	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D7Ertd143e'>D7Ertd143e</a>
-Mir181a-1	-3.20886334319296	4.33388500974742	-8.528721562826	5.95908204570219e-07	1.09666332486229e-05	6.48742379588458	506	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181a-1'>Mir181a-1</a>
-Mir547	-4.64199116509563	0.384583900671288	-8.48569977551612	6.33121735643368e-07	1.14665381010966e-05	6.34288346197563	42	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir547'>Mir547</a>
-Mir3102	-4.82802034015575	1.26816340424779	-8.40617041640129	7.08539703084848e-07	1.26319343940595e-05	6.2533959548051	87	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3102'>Mir3102</a>
-Mir194-1	3.86792676846218	4.28030595336869	8.2361953191898	9.03449017918911e-07	1.5859005068392e-05	6.08687440143381	635	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir194-1'>Mir194-1</a>
-Mir199a-2	-3.62193724804755	3.76746624824118	-8.22528846947687	9.17754251311817e-07	1.58660242537391e-05	6.07294487982063	352	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199a-2'>Mir199a-2</a>
-Mir375	4.36561952992499	1.70304479419652	8.20239976081094	9.48559026077637e-07	1.61538186381281e-05	5.9804850351652	123	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir375'>Mir375</a>
-Mir128-1	-2.79500838795041	4.68404652058909	-8.16636754121193	9.99287948408945e-07	1.67674639578619e-05	5.95537435854342	527	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir128-1'>Mir128-1</a>
-Mir1a-1	-4.50930254765404	0.235845136893643	-8.15352480043541	1.01805558742015e-06	1.68348032644405e-05	5.89233114702952	42	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1a-1'>Mir1a-1</a>
-Mir17hg	1.26324530315481	13.08692945461	8.08792426896809	1.11990826888155e-06	1.80004069127122e-05	5.39248242771111	145451	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir17hg'>Mir17hg</a>
-Mir92-1	1.26323093975761	13.0869221993444	8.08780961117952	1.12009543453336e-06	1.80004069127122e-05	5.39230857078851	145450	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir92-1'>Mir92-1</a>
-Mir881	4.55329779507755	0.622217688176746	7.98090604480001	1.30985575977083e-06	2.06385233899717e-05	5.68307629847666	64	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir881'>Mir881</a>
-Mir125b-1	-3.19780406116102	4.7293501044755	-7.96524973476641	1.340381181277e-06	2.06385233899717e-05	5.66721192306587	609	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125b-1'>Mir125b-1</a>
-2610203C20Rik	-3.20042083590071	4.73071629949528	-7.96367997663051	1.3434829565975e-06	2.06385233899717e-05	5.66487879544241	610	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610203C20Rik'>2610203C20Rik</a>
-Scnn1b	-4.63822537309801	0.37290502628334	-7.9570799219013	1.35660758479218e-06	2.06385233899717e-05	5.63911983957	45	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scnn1b'>Scnn1b</a>
-Mir193b	-3.19095319216208	3.51292960275358	-7.90681185253976	1.46112366345347e-06	2.19360802631633e-05	5.62073482323402	260	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir193b'>Mir193b</a>
-Mir183	4.30421971951602	3.92737361468754	7.78136892736858	1.76081314682182e-06	2.60215226213659e-05	5.44000583749589	563	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir183'>Mir183</a>
-5430416N02Rik	3.07746071410873	4.3937689770433	7.77455061595853	1.77885956570249e-06	2.60215226213659e-05	5.40856341816749	564	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5430416N02Rik'>5430416N02Rik</a>
-Mir125a	-2.6112312467571	10.9299667279975	-7.67497504879118	2.06586606398761e-06	2.98373820127831e-05	4.87458713303236	37867	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir125a'>Mir125a</a>
-Mir200b	6.64163006978911	3.12821174098826	7.58298811849222	2.37461716273863e-06	3.38679772835598e-05	5.13195387121669	888	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200b'>Mir200b</a>
-C430049B03Rik	-1.92074554462898	10.5496297843175	-7.55549117760725	2.4760890707944e-06	3.48792299972396e-05	4.70418935748661	25716	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C430049B03Rik'>C430049B03Rik</a>
-Terc	4.24682289892723	0.87844372666952	7.3826580782883	3.2281439398588e-06	4.49184418948646e-05	4.83681905205792	66	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Terc'>Terc</a>
-Mir871	5.21513327520529	2.43957936484213	7.24439581531717	4.00226877508459e-06	5.50191406309821e-05	4.63418699567578	290	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir871'>Mir871</a>
-Mir30e	-1.90475431278526	13.2693114305891	-7.14894534136424	4.6492913699815e-06	6.28199839913465e-05	3.89856793405104	186796	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir30e'>Mir30e</a>
-Mir24-1	-3.10183666628555	3.10602318965769	-7.13671325687185	4.73984945200915e-06	6.28199839913465e-05	4.48008371426601	189	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir24-1'>Mir24-1</a>
-Mir3074-1	-3.10183666628555	3.10602318965769	-7.13671325687185	4.73984945200915e-06	6.28199839913465e-05	4.48008371426601	189	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3074-1'>Mir3074-1</a>
-Mir592	4.27837071128313	0.882966518707851	7.13005059451541	4.78995495814825e-06	6.28199839913465e-05	4.46386515426502	70	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir592'>Mir592</a>
-Serpina4-ps1	6.28609584979245	1.44994282762173	7.10887070838901	4.95297318411398e-06	6.42198000349325e-05	4.43976042902202	295	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Serpina4-ps1'>Serpina4-ps1</a>
-Mirlet7e	-1.98704484524714	6.38418687649397	-6.91936550313624	6.69984149789542e-06	8.58934735853783e-05	3.9044291222869	1576	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7e'>Mirlet7e</a>
-Mir3470b	4.76222273641772	1.545054677666	6.90067154705821	6.90430035193184e-06	8.75311855728247e-05	4.11927719036494	132	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3470b'>Mir3470b</a>
-Mir497	-2.37449282835512	5.72555109896591	-6.88407718002354	7.09129622786183e-06	8.89139450108829e-05	3.89837376299718	963	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir497'>Mir497</a>
-Mir30d	-1.6250750764544	13.1824457426439	-6.86162843142705	7.35278174335401e-06	9.11904779257275e-05	3.42562585807056	161730	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir30d'>Mir30d</a>
-Mir107	1.66807649183652	7.69910580818381	6.8393447582273	7.62239107335082e-06	9.35177227386374e-05	3.6976878474277	3843	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir107'>Mir107</a>
-Mir301	-1.74763355751926	6.9632575863254	-6.82958967456103	7.7436706688371e-06	9.39949812036503e-05	3.72033936484245	2119	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir301'>Mir301</a>
-Mir455	2.46320289727146	5.30404932290074	6.81532109954182	7.92473126605604e-06	9.51801934165257e-05	3.83331724079003	895	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir455'>Mir455</a>
-Mir429	4.86439995826456	3.23263249974835	6.78791698606005	8.28507245768243e-06	9.84715382730797e-05	3.94480735955982	499	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir429'>Mir429</a>
-1700003L19Rik	-3.76057540139707	-0.126261497218445	-6.63064169305684	1.07147990447279e-05	0.000126033542791258	3.68122560260964	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700003L19Rik'>1700003L19Rik</a>
-Mir99a	-2.28512022818228	9.92572736694444	-6.62442810768864	1.08249668655068e-05	0.000126033542791258	3.2109507357583	17575	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir99a'>Mir99a</a>
-Mir145	-1.97697703068737	8.78484403570673	-6.5439327901519	1.23647594606541e-05	0.000141146069525717	3.13555880659816	7539	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir145'>Mir145</a>
-Mir34b	-4.12275476924448	0.708468030075098	-6.54365850253687	1.23703829558034e-05	0.000141146069525717	3.55740492991767	54	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir34b'>Mir34b</a>
-Mir31	2.28911995870681	6.51541747970347	6.52931766820141	1.26681737242473e-05	0.000143112734845209	3.25621845009615	2078	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir31'>Mir31</a>
-Mir181b-1	-3.60801009779468	-0.132126628141882	-6.46494720684188	1.41005553764556e-05	0.000157732683181724	3.42410398459059	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181b-1'>Mir181b-1</a>
-Gm6307	-4.1578316997704	0.656018151435715	-6.45273564502753	1.43909587108892e-05	0.000159418290185675	3.41462429299529	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm6307'>Gm6307</a>
-Scarna6	1.69929242985022	7.02301841351445	6.42269285853436	1.51324405034754e-05	0.000166020332831399	3.03238527080513	2398	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna6'>Scarna6</a>
-Snord45b	1.94022355970573	6.80826479898751	6.39728013438808	1.57909283820436e-05	0.000171594755084873	3.00447879542696	2199	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord45b'>Snord45b</a>
-Mir212	-2.84645310030162	3.44913875490104	-6.35557690856707	1.6937466935156e-05	0.000182317450688802	3.21240862806012	232	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir212'>Mir212</a>
-Mir488	-4.10203604485773	1.24180834532503	-6.29103817686794	1.88870111723183e-05	0.000201402614463693	3.15543310741006	78	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir488'>Mir488</a>
-Mir1943	-2.71589064856915	3.44876720857909	-6.23580114025192	2.07423167962376e-05	0.000219138735782473	3.00834314558259	215	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1943'>Mir1943</a>
-Gas5	1.24087717560169	10.5129034284973	6.13133629490868	2.4792457454819e-05	0.000259524715192188	2.31915097100889	24887	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gas5'>Gas5</a>
-Mir1960	-3.55886465849503	0.603332307653829	-6.02805967736536	2.96173517543744e-05	0.000307212712288556	2.72737825973636	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1960'>Mir1960</a>
-Snord72	1.83422077226714	4.99202771858388	6.01300538064759	3.03988327484681e-05	0.000312478091585605	2.48059356064701	603	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord72'>Snord72</a>
-Mir126	-1.4123938474776	14.7113257499272	-5.9690966101592	3.28038341776394e-05	0.000334189060684701	1.77670178050375	420720	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir126'>Mir126</a>
-Mir181b-2	-3.5537298874584	2.37784481058975	-5.74465057345259	4.86143755138839e-05	0.000490876127976474	2.24688113349229	154	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir181b-2'>Mir181b-2</a>
-4930581F22Rik	3.25147651228939	0.329341147921603	5.72231806379132	5.05741508633493e-05	0.000506185141535803	2.2176701707354	33	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930581F22Rik'>4930581F22Rik</a>
-Taf1d	1.56967838004803	6.27598295057893	5.62971411199061	5.96235762303463e-05	0.000591569569381088	1.67884064404776	1421	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Taf1d'>Taf1d</a>
-Mir324	-2.38077905852261	3.65370681185719	-5.61738196066422	6.09504435595697e-05	0.000599521173288526	1.9104544791018	248	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir324'>Mir324</a>
-Mtmr2	-2.30493988089979	4.77764446891153	-5.57410629776523	6.58554908247018e-05	0.000642231752401579	1.7123130370103	580	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mtmr2'>Mtmr2</a>
-Mir137	3.41092416262533	0.0324356592441258	5.50287186084007	7.48455682327983e-05	0.000723718587742567	1.84456682895684	29	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir137'>Mir137</a>
-Snhg1	0.975366701589908	11.1969347059892	5.49575538415102	7.5811401213261e-05	0.000726897552809502	1.12394645028672	37837	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg1'>Snhg1</a>
-Mir34a	-2.05826883405221	3.36051649740781	-5.47484354411999	7.87253643157781e-05	0.000748547005702523	1.67723038143596	180	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir34a'>Mir34a</a>
-Mir298	-3.44904214184284	0.481437816526014	-5.39740371005322	9.05725273791661e-05	0.000854076477187012	1.66441956376117	37	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir298'>Mir298</a>
-Mir30b	-1.37954359870678	9.2115221848988	-5.37206514503938	9.4840390621554e-05	0.000886990866386828	1.00959570224732	10011	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir30b'>Mir30b</a>
-2310001H17Rik	3.60260656982356	0.877139295086231	5.35615735698035	9.76262576906534e-05	0.000902593356272145	1.57720822721783	54	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310001H17Rik'>2310001H17Rik</a>
-Pex16	3.10814004056272	0.242483417469106	5.35355087544425	9.80907766676126e-05	0.000902593356272145	1.58678494520955	30	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pex16'>Pex16</a>
-Mir741	3.33919133389387	0.432231427661093	5.2950378042311	0.000109146860855228	0.000996292545886519	1.47796989545021	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir741'>Mir741</a>
-Gm6313	-3.15860344908017	-0.430119305523511	-5.24231069726794	0.000120220067795944	0.00108865950281883	1.40353714409938	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm6313'>Gm6313</a>
-Mir328	-1.36488724959	7.2282210636054	-5.23221518519415	0.000122470141866871	0.00110030261315039	0.870852174596449	2362	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir328'>Mir328</a>
-Snord33	1.25647224562943	7.71222650703403	5.19862342341357	0.000130277220055511	0.00116129928190108	0.778490918357933	3442	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord33'>Snord33</a>
-Rpph1	1.87063945690961	4.43992987975591	5.19124070458341	0.000132061294296316	0.0011680770293961	1.05386997375291	430	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rpph1'>Rpph1</a>
-Mir291a	3.17904342101315	-0.0791999402663102	5.18540568400292	0.000133489301957871	0.00117026083393732	1.2956738181937	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir291a'>Mir291a</a>
-Mir186	-1.38629871411117	10.176089899221	-5.181881716386	0.000134359482248719	0.00117026083393732	0.594672202880173	18235	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir186'>Mir186</a>
-Gm16596	-3.02811906442667	-0.421976649282355	-5.15901843295933	0.000140150118907224	0.00121144913388744	1.25840752971795	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16596'>Gm16596</a>
-Mirlet7i	-1.21381140575271	10.6031742297066	-5.15326347701587	0.000141648110216644	0.00121519168238489	0.514620675402163	26242	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7i'>Mirlet7i</a>
-Sra1	2.97648314190951	-0.188256184051246	5.14486604509538	0.000143863812461334	0.00122498962700285	1.22868620554498	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sra1'>Sra1</a>
-Mir700	-3.05275751205424	3.03686027981893	-5.10658051111472	0.00015443097639702	0.00130522773384445	1.06937466394294	177	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir700'>Mir700</a>
-Mir30c-1	-1.44640830149114	5.51774362365196	-5.09058727395353	0.000159080836478697	0.0013266290585589	0.730639691134108	732	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir30c-1'>Mir30c-1</a>
-Mir674	-1.94702895981213	4.45877434664642	-5.08988436247691	0.000159288502210841	0.0013266290585589	0.846234772297753	392	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir674'>Mir674</a>
-Snord45c	1.44139263505882	6.31780757188042	5.0752407566119	0.000163679307853258	0.00135146340163194	0.643628779392595	1427	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord45c'>Snord45c</a>
-Ank1	-1.70157147221109	10.9929711198162	-5.07209350467361	0.000164639275045433	0.00135146340163194	0.337810380148678	33776	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ank1'>Ank1</a>
-Mirlet7b	-1.09478453248563	9.30463614623057	-5.06223764308063	0.000167683437276746	0.00136662001380548	0.418305977430397	10012	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7b'>Mirlet7b</a>
-0610008F07Rik	3.20935973501609	0.342617899865038	5.04843460516125	0.000172045196108449	0.00139222389191305	1.0441746904328	34	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610008F07Rik'>0610008F07Rik</a>
-Snord4a	1.57395983217788	5.94089477513251	5.00029990452424	0.000188198499627571	0.00151221470475393	0.535941755206456	1151	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord4a'>Snord4a</a>
-Mir3107	-1.70018651164628	9.99212523723331	-4.97672369154541	0.000196676176463643	0.00155838553711817	0.215189363582583	16873	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3107'>Mir3107</a>
-Mir486	-1.70018651164628	9.99212523723331	-4.97672369154541	0.000196676176463643	0.00155838553711817	0.215189363582583	16873	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir486'>Mir486</a>
-Mir100	-1.97076444192024	8.99815411447499	-4.96949043197095	0.000199355724522589	0.00156872332193292	0.262493038912075	8837	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir100'>Mir100</a>
-6430411K18Rik	-3.18910263916585	-0.373872894349982	-4.91488268129579	0.000220845557812913	0.00170486995980212	0.826251830470595	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/6430411K18Rik'>6430411K18Rik</a>
-Mir433	-3.18910263916585	-0.373872894349982	-4.91488268129579	0.000220845557812913	0.00170486995980212	0.826251830470595	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir433'>Mir433</a>
-Mir190	-2.07544392773473	3.1544454577673	-4.91417324518583	0.000221140012314386	0.00170486995980212	0.671557118650327	163	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir190'>Mir190</a>
-Mir668	-2.84374273013661	-0.157703843092941	-4.86996462339487	0.000240314465841743	0.00184026043976798	0.746753746471687	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir668'>Mir668</a>
-0610012G03Rik	2.84115361016785	-0.244188556172649	4.84933497977366	0.000249843031682205	0.00190047266099598	0.705829411755822	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610012G03Rik'>0610012G03Rik</a>
-Mirlet7d	-1.19906882560952	10.0080528514984	-4.83828196963314	0.000255108219097298	0.00192767203966899	-0.0535917366982233	16847	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7d'>Mirlet7d</a>
-Mir320	-1.40563797109219	6.563348272824	-4.77568906174122	0.000287168062262582	0.00215564973053688	0.0467165593444996	1651	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir320'>Mir320</a>
-Snord66	1.15430111322029	8.03351541888005	4.75658981303321	0.00029775850741536	0.00222053893438514	-0.0877963597335594	4212	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord66'>Snord66</a>
-Hgd	4.54425664237216	0.975547692617975	4.73952572490202	0.000307561641064749	0.00225560361403978	0.450492806487889	137	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Hgd'>Hgd</a>
-Aqp9	4.93135714830861	0.753510541775538	4.73814880056307	0.000308367063909922	0.00225560361403978	0.445426512401092	161	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Aqp9'>Aqp9</a>
-Mir221	-1.08377350661343	8.47402248983799	-4.73470478811828	0.000310391167513083	0.00225560361403978	-0.161171563827692	5659	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir221'>Mir221</a>
-Atf5	3.74327970750113	0.168725495917353	4.73192727585554	0.00031203354916423	0.00225560361403978	0.467422722695712	50	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Atf5'>Atf5</a>
-Ahsg	7.43012370228481	2.43819500653074	4.73140267365542	0.000312344759875797	0.00225560361403978	0.392509485594371	1524	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ahsg'>Ahsg</a>
-Cyp2d13	3.62058562658928	0.099076105394318	4.71784217799444	0.000320501474638856	0.00229995083372915	0.445950346991055	44	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cyp2d13'>Cyp2d13</a>
-Mir292	3.55331832828793	0.0808135496327816	4.67052458846538	0.000350727059524427	0.00250112234323357	0.360392052911509	41	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir292'>Mir292</a>
-Proc	4.16579682989808	0.376893953921531	4.63475223165321	0.000375520073648099	0.00266129443498435	0.275862327084029	83	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Proc'>Proc</a>
-2610019E17Rik	1.58277820027238	5.58959301890268	4.63093795449771	0.00037826821496869	0.00266422242764985	-0.140287526130874	892	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610019E17Rik'>2610019E17Rik</a>
-Mir379	-2.08294744907303	3.05372097245691	-4.61798165733268	0.000387758909131681	0.00271431236392177	0.128998572399559	153	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir379'>Mir379</a>
-Mir96	3.092187161072	-0.127577830654966	4.61264491367143	0.000391739223724717	0.00272545398945063	0.269031262574771	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir96'>Mir96</a>
-5033403H07Rik	3.03100334960097	-0.167104636116587	4.55138913141517	0.00044055961680218	0.00304390944849929	0.159657330767462	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5033403H07Rik'>5033403H07Rik</a>
-Mir582	-4.60557103590561	3.35812677089552	-4.5486926708253	0.00044284747454065	0.00304390944849929	0.0591283272554897	566	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir582'>Mir582</a>
-Mir335	-1.27174458468766	6.43063411797007	-4.54414079104836	0.000446737391037914	0.00305225965972611	-0.393123932477534	1318	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir335'>Mir335</a>
-Gm5424	4.79310957596335	1.09020146508355	4.53505892344961	0.000454603987554657	0.00308751874880871	0.0640172708933422	181	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5424'>Gm5424</a>
-Snord96a	1.64486304749729	4.67116544357615	4.51910388563813	0.0004687711663005	0.00316489882099923	-0.255892987917286	487	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord96a'>Snord96a</a>
-Fam120b	3.09294836244015	0.400892342309139	4.51279274228026	0.000474499826623265	0.00318473118927733	0.0711882890790463	39	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fam120b'>Fam120b</a>
-1810032O08Rik	1.41990709594509	5.47749401704587	4.44622801412284	0.000539494231805467	0.00359978314906455	-0.491596569959665	801	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810032O08Rik'>1810032O08Rik</a>
-D830005E20Rik	-2.66421484690988	-0.635454055345691	-4.43818702356919	0.00054794279494766	0.00363489958741442	-0.0273233727843643	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D830005E20Rik'>D830005E20Rik</a>
-Mir3057	-1.76308589999293	3.90842103747244	-4.39033832828025	0.000601107772422842	0.00396453160886973	-0.421971049333088	244	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3057'>Mir3057</a>
-Dcaf11	3.64616824902598	1.34504089418874	4.36305371925593	0.000633768357283662	0.00415591779115321	-0.228339632338981	105	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dcaf11'>Dcaf11</a>
-Mir141	2.71262314324362	4.77357067250837	4.34309768158673	0.000658805704226011	0.00429541319155359	-0.576407055554532	835	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir141'>Mir141</a>
-Clip4	-2.70686636040313	-0.590132795422603	-4.22339289420565	0.000831845216151027	0.00538076227850526	-0.424317219340228	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Clip4'>Clip4</a>
-Atp2a2	-3.03468731889576	3.9897529348455	-4.22163834350324	0.000834701948549895	0.00538076227850526	-0.712425757555907	394	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Atp2a2'>Atp2a2</a>
-Snord11	1.70196648813426	4.30076703857411	4.20393833047899	0.000864088763598198	0.00553890606328957	-0.81986210274439	399	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord11'>Snord11</a>
-Mir1a-2	-2.99188005456984	-0.157703843092941	-4.1964183364679	0.00087689254654494	0.0055585244200432	-0.484125725482271	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1a-2'>Mir1a-2</a>
-Mir1b	-2.99188005456984	-0.157703843092941	-4.1964183364679	0.00087689254654494	0.0055585244200432	-0.484125725482271	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1b'>Mir1b</a>
-Snord95	0.986915429703335	7.67764085008967	4.16122119437911	0.000939451338082392	0.00592217666713818	-1.23233286437982	3258	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord95'>Snord95</a>
-Tardbp	2.97062100907675	0.883541928525332	4.15354257136734	0.000953695266999763	0.00597893571234467	-0.601444869463529	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tardbp'>Tardbp</a>
-Mir34c	-4.34256582352703	3.19074386781529	-4.14603488500754	0.000967835650645262	0.00601077590779499	-0.705590893704782	715	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir34c'>Mir34c</a>
-Nagpa	2.44212396887249	0.350172381597785	4.14525853315587	0.000969310049986221	0.00601077590779499	-0.597611598821245	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nagpa'>Nagpa</a>
-Bmp1	2.83284622628297	0.517967853857585	4.09387916064743	0.00107217035218767	0.00661268309106014	-0.708641495529353	39	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Bmp1'>Bmp1</a>
-Crem	2.33712898304139	-0.121515515943567	4.0829392931282	0.00109547464985413	0.00672008911550302	-0.694023102630085	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Crem'>Crem</a>
-AI506816	2.42270659752045	-0.452690836228738	4.06592993902701	0.00113274010846169	0.00690883244123217	-0.71823549330855	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AI506816'>AI506816</a>
-Snhg12	1.2392736392255	8.22309194102909	4.06341770887408	0.0011383527598174	0.00690883244123217	-1.46153826275546	5403	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg12'>Snhg12</a>
-Snord99	1.60658132000619	7.61494864267921	4.05085172286681	0.00116685579559478	0.00702317443883207	-1.44229619547632	3970	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord99'>Snord99</a>
-Mir450b	-1.85261764183761	3.54483087111489	-4.0485135276699	0.00117223928473074	0.00702317443883207	-1.03659851317493	205	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir450b'>Mir450b</a>
-Mir218-1	-2.37943795492075	-0.788253108012747	-4.04703416313971	0.00117565847310861	0.00702317443883207	-0.747038393026922	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir218-1'>Mir218-1</a>
-Mir140	-0.901201558594089	9.41159056411459	-4.03552071597731	0.00120261909580773	0.00711569212542235	-1.59661829698077	10795	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir140'>Mir140</a>
-Mir483	-2.42347249247516	-0.756810762138252	-4.03017784461274	0.0012153437165189	0.00711569212542235	-0.779102255351839	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir483'>Mir483</a>
-Sqrdl	3.73159563362893	0.945260485192632	4.02973478085716	0.00121640506624817	0.00711569212542235	-0.861776345505721	102	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sqrdl'>Sqrdl</a>
-Mir144	-2.29129119700542	9.41554506116587	-4.02892270273821	0.00121835283652175	0.00711569212542235	-1.60506726133582	13709	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir144'>Mir144</a>
-Mir210	-1.50896749399836	4.99944311707418	-4.02726966499444	0.00122232748166764	0.00711569212542235	-1.27568646998696	592	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir210'>Mir210</a>
-Mir136	-1.91584100290298	5.18425364003902	-4.01919516322722	0.00124193308478254	0.0071567962107923	-1.30273093425232	753	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir136'>Mir136</a>
-Mir3071	-1.91584100290298	5.18425364003902	-4.01919516322722	0.00124193308478254	0.0071567962107923	-1.30273093425232	753	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3071'>Mir3071</a>
-Snord43	1.12653255459757	7.42275234629614	4.00820447995329	0.00126913582767258	0.00727680391645436	-1.51733899954002	2975	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord43'>Snord43</a>
-Nlrp5-ps	3.06966395518949	-0.135132312387713	3.98319245863032	0.00133332885542151	0.00760664112017971	-0.902428549559341	34	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nlrp5-ps'>Nlrp5-ps</a>
-4833418N02Rik	1.82386047796749	3.16360132579728	3.94914311648112	0.00142607040510993	0.00809525538423099	-1.16130756295351	170	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4833418N02Rik'>4833418N02Rik</a>
-Pknox1	2.58217103686749	-0.386376496641391	3.94009175499237	0.00145181139000837	0.00820057819801758	-0.95836656931183	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pknox1'>Pknox1</a>
-Mir1843	1.0607275776375	7.37281183848222	3.92128643575477	0.00150681377235572	0.008458947103908	-1.6871582740604	2782	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1843'>Mir1843</a>
-Scarna3b	1.05890367361984	7.37450114126396	3.91942250502631	0.00151237967501948	0.008458947103908	-1.69099763322655	2784	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna3b'>Scarna3b</a>
-Phyhd1	2.69871613662387	-0.324381809808589	3.91199503566496	0.00153476742516205	0.00850676625406398	-1.01680363882686	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Phyhd1'>Phyhd1</a>
-Gm14207	-2.37304409257741	-0.416502509079365	-3.91164184680055	0.00153584035787658	0.00850676625406398	-1.00193629125355	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm14207'>Gm14207</a>
-2700038G22Rik	-1.20941383309973	5.69714561045198	-3.89423392377302	0.00158967928624185	0.00876243509952633	-1.61494260853442	872	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2700038G22Rik'>2700038G22Rik</a>
-Mir1249	-1.57997335358757	3.92571996538164	-3.86749708921129	0.00167613304205796	0.00914790116608117	-1.45071018307216	240	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1249'>Mir1249</a>
-Mir680-2	2.69993600843854	2.33940488575521	3.86630244603638	0.00168010559076576	0.00914790116608117	-1.19260507987069	134	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir680-2'>Mir680-2</a>
-4732471J01Rik	2.47123788102083	1.83426864599497	3.86203852417355	0.00169436257731633	0.00914790116608117	-1.16621943210526	78	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4732471J01Rik'>4732471J01Rik</a>
-0610005C13Rik	3.75552246080227	1.36486301235638	3.86197876879019	0.00169456324819645	0.00914790116608117	-1.18181214765895	126	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610005C13Rik'>0610005C13Rik</a>
-Mir297a-3	-2.83038541581836	0.620898493219045	-3.86045228910567	0.00169969767502998	0.00914790116608117	-1.12583690632738	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir297a-3'>Mir297a-3</a>
-D830015G02Rik	-2.85288965105576	-0.0430116131169372	-3.8540007067199	0.00172157316996324	0.00918761905215916	-1.135758525707	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D830015G02Rik'>D830015G02Rik</a>
-Mir190b	-2.58480150088673	0.118920372323834	-3.85352956525721	0.00172318183800356	0.00918761905215916	-1.12342997930169	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir190b'>Mir190b</a>
-Cacnb2	-2.36615720731133	-0.788253108012747	-3.84657108578939	0.00174711947070295	0.00927192240033519	-1.12169301350773	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cacnb2'>Cacnb2</a>
-Mtfr1	2.77427419358368	0.492589466798896	3.83997888411189	0.001770108543009	0.00935043447950588	-1.18729669638225	40	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mtfr1'>Mtfr1</a>
-Snord1a	1.56162899910724	3.64400301591315	3.83681604346118	0.0017812471515648	0.00936313497745819	-1.45598973323054	230	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord1a'>Snord1a</a>
-Snord68	0.957663081634941	8.79334935483305	3.83464756418373	0.00178892500007527	0.00936313497745819	-1.95644313626433	7303	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord68'>Snord68</a>
-Mir878	2.41936085459412	-0.447944854953861	3.82652263259005	0.00181799260036803	0.00947182446127819	-1.16702401112308	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir878'>Mir878</a>
-Mir511	1.70981318188926	3.27929603694437	3.81643804724114	0.0018547387918105	0.00959956329857923	-1.44128807747474	183	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir511'>Mir511</a>
-Gm15787	2.48153800186339	-0.386376496641391	3.81519042194731	0.00185933697544786	0.00959956329857923	-1.19313192146596	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm15787'>Gm15787</a>
-Surf1	2.36126838851735	0.0872159088448913	3.80305260835126	0.00190467958178741	0.00978936667936682	-1.23097217655323	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Surf1'>Surf1</a>
-Mir1968	2.37800084613411	0.673754504632647	3.77926083620018	0.00199683807660974	0.0102052996591412	-1.28734965758831	33	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1968'>Mir1968</a>
-0610007N19Rik	-1.90120438734532	2.49555567542219	-3.77758577340756	0.00200349441161053	0.0102052996591412	-1.41487533930946	104	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610007N19Rik'>0610007N19Rik</a>
-Snhg8	1.59039445480745	3.20715500905903	3.75615085858512	0.00209068421652196	0.0106020919602291	-1.55245580151111	164	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg8'>Snhg8</a>
-Mir99b	-1.91682795135645	10.9172256229833	-3.75211079306552	0.0021075435523792	0.0106402973153304	-2.25375326353787	35086	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir99b'>Mir99b</a>
-Mir365-2	2.40700496454038	0.263026808334256	3.74756102414217	0.00212669484901157	0.0106896864437102	-1.33894003797924	25	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir365-2'>Mir365-2</a>
-A630019I02Rik	-2.46429396746277	-0.331334129436178	-3.72894212518103	0.00220692150206125	0.0110442869905785	-1.34913426897275	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A630019I02Rik'>A630019I02Rik</a>
-Snora24	1.55151202645698	3.18622291582758	3.72443395692917	0.00222680324291416	0.011095120088057	-1.61270421930364	160	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora24'>Snora24</a>
-Tmem205	3.35434252485109	1.34402776298411	3.71826658220279	0.00225429637910924	0.0111803962803989	-1.43852442151233	106	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tmem205'>Tmem205</a>
-Chka	2.66265038819564	-0.367431606769972	3.71621547263374	0.00226351581136911	0.0111803962803989	-1.38147433178837	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Chka'>Chka</a>
-Il15ra	3.0322333836799	1.34537734368953	3.69802409752219	0.00234697158113459	0.0115426490261835	-1.46743653610507	78	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Il15ra'>Il15ra</a>
-Mir340	1.08524047523296	8.40150339094243	3.68614126686871	0.00240316001921397	0.0117592747718197	-2.22640527546981	5906	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir340'>Mir340</a>
-Mir222	-0.989531454809674	6.83748363675873	-3.68437434098812	0.00241163040894463	0.0117592747718197	-2.12318215364121	1840	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir222'>Mir222</a>
-Snord16a	2.29129601947442	3.76378890459482	3.66271871458069	0.0025179297139219	0.0122253523556804	-1.78739319047154	368	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord16a'>Snord16a</a>
-Snora16a	1.52372874357926	4.55536943029929	3.65510898252504	0.0025563971250754	0.0123595301682671	-1.93830245300744	464	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora16a'>Snora16a</a>
-Meg3	-2.68467060880573	-0.63693223477029	-3.65193847372806	0.00257259886012651	0.0123853810101449	-1.49159048882037	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Meg3'>Meg3</a>
-Mir503	-1.62803161355467	2.50957996141068	-3.64484640281096	0.00260921685489431	0.0125088925690521	-1.68081269699905	88	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir503'>Mir503</a>
-Snord34	1.9527050627559	2.43578559807808	3.64115899694926	0.00262846334208935	0.0125484379636985	-1.64754683241552	110	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord34'>Snord34</a>
-Mir330	-1.20046349365495	3.89404790732931	-3.62347773804946	0.00272276191759244	0.0129444639498874	-1.93549975651123	231	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir330'>Mir330</a>
-Snord123	-1.85009039423829	2.46689582455698	-3.62068933774574	0.00273794187669866	0.012962621084287	-1.71578244093404	102	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord123'>Snord123</a>
-1700123M08Rik	-2.53907013725051	-0.265019789848831	-3.61128151512854	0.0027897908425338	0.0131535179807069	-1.57539508080877	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700123M08Rik'>1700123M08Rik</a>
-U05342	2.83058680402627	0.79675702914225	3.60519476819122	0.00282386325723748	0.0132525688403876	-1.63602002228639	54	<a href='http://www.genecards.org/index.php?path=/Search/keyword/U05342'>U05342</a>
-Mir331	-1.23366463697674	4.50384654608554	-3.60339313514846	0.00283402874413198	0.0132525688403876	-2.05839651689923	359	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir331'>Mir331</a>
-Snord47	1.75254142711948	3.676071658915	3.56574123782182	0.00305512804060726	0.014228167731971	-1.9866272780716	277	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord47'>Snord47</a>
-1810026B05Rik	2.40748340219702	-0.486051677644913	3.55958270725964	0.00309291230781102	0.014345581069969	-1.66670102684768	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810026B05Rik'>1810026B05Rik</a>
-Mir1933	-2.60309478178739	0.220871127749556	-3.55529124527092	0.00311951960536729	0.0144104124280327	-1.68059425943861	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1933'>Mir1933</a>
-Gm9899	-2.07308991765323	-0.941052160679803	-3.54532493149369	0.00318220422627889	0.0146407057346138	-1.68493975204853	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm9899'>Gm9899</a>
-Hspa13	2.27524541038784	-0.523818455835255	3.54060461550118	0.00321233452906321	0.0147199746894021	-1.69974419035356	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Hspa13'>Hspa13</a>
-Mir3096b	-1.20474634794453	4.70053095823646	-3.5153757202842	0.00337831126227612	0.0153571838655659	-2.25812559332021	435	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3096b'>Mir3096b</a>
-Snord93	-1.20474634794453	4.70053095823646	-3.5153757202842	0.00337831126227612	0.0153571838655659	-2.25812559332021	435	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord93'>Snord93</a>
-Adhfe1	2.52527478072387	0.179068747865736	3.50530102423767	0.00344697804598443	0.0156071505970962	-1.80634560509756	25	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Adhfe1'>Adhfe1</a>
-Gm10768	3.5358301921593	0.021906952859762	3.48225041539546	0.00360941220951063	0.0162780210713503	-1.87207612241023	59	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10768'>Gm10768</a>
-Snord85	1.10352244207212	9.7813263715169	3.47953980186612	0.00362901230761682	0.0163019804842157	-2.72788678002978	15092	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord85'>Snord85</a>
-AF357399	1.79554087095325	2.33898958600026	3.47297259387192	0.00367694357668826	0.0164098488394083	-1.96818697726206	89	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AF357399'>AF357399</a>
-Mir551b	2.15397612089142	-0.590132795422603	3.47231349486416	0.00368178904722922	0.0164098488394083	-1.82422890137775	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir551b'>Mir551b</a>
-Def8	2.41874321422316	-0.465993593620758	3.46859651584658	0.00370923535603452	0.0164678503550015	-1.83970905317218	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Def8'>Def8</a>
-Mir664	-1.01764634401405	5.37432688059702	-3.45211961435443	0.00383339754528852	0.0168755824717367	-2.46240607108039	632	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir664'>Mir664</a>
-Mir467c	2.31849317866793	0.658275206086465	3.45045370722881	0.00384618107849534	0.0168755824717367	-1.9100187677291	35	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir467c'>Mir467c</a>
-Mir345	-0.912671478268366	6.07047283018279	-3.44931934620133	0.00385491021641726	0.0168755824717367	-2.53238717399997	1042	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir345'>Mir345</a>
-Tysnd1	2.30243120612363	-0.498012096151827	3.44862877647117	0.0038602340272772	0.0168755824717367	-1.87482817968793	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tysnd1'>Tysnd1</a>
-Szrd1	3.00773623992391	1.76282092941222	3.43919964294803	0.00393366880940514	0.0171175138601232	-1.97326991386	108	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Szrd1'>Szrd1</a>
-Snord35a	1.64122011441228	2.9111550248254	3.43698444459166	0.00395112336041969	0.0171175138601232	-2.13032503281622	131	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord35a'>Snord35a</a>
-Snora36b	-1.01237028448432	5.37669976851797	-3.43578817017266	0.00396058164686462	0.0171175138601232	-2.49502841436006	633	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora36b'>Snora36b</a>
-Mir3471-1	-1.1190522551011	4.8388269488082	-3.42504935436875	0.00404651146785495	0.017401703908276	-2.45454758690256	469	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3471-1'>Mir3471-1</a>
-Snord42b	1.04806162755878	6.10341205402338	3.42377413826923	0.00405683894794165	0.017401703908276	-2.57887542149696	1095	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord42b'>Snord42b</a>
-Snord23	2.9296105505117	1.31458313757935	3.40028372003562	0.00425187802628573	0.0181700105917304	-2.02991542506104	83	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord23'>Snord23</a>
-Wac	2.7504919030552	0.283618002868323	3.39632013594792	0.00428570220488658	0.0182462172230433	-2.02643747960115	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wac'>Wac</a>
-Mir98	-0.933678340542421	7.94963852128455	-3.39430346367777	0.00430301532596754	0.0182518233714831	-2.78058118585178	4140	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir98'>Mir98</a>
-4930483K19Rik	2.52533407356931	-0.00211602021024845	3.38443072134124	0.00438878944604477	0.0185466991034707	-2.0252331979185	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930483K19Rik'>4930483K19Rik</a>
-9530036O11Rik	-2.18021083734	-0.880373807283523	-3.36944259471363	0.00452229090218708	0.0190403465660349	-2.01615459630653	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9530036O11Rik'>9530036O11Rik</a>
-Airn	-3.32728005388875	1.05242623359369	-3.36289553627823	0.00458187540512432	0.0192202935192899	-2.09508526477381	66	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Airn'>Airn</a>
-Mir542	-1.22316159239699	3.81531438686763	-3.32742457590211	0.00491862125207608	0.0205573144638052	-2.50522353523098	225	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir542'>Mir542</a>
-Mir350	-1.56832295120394	3.2654986223895	-3.31591379494715	0.00503313311490562	0.0209591419128004	-2.43484812644587	172	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir350'>Mir350</a>
-Mir467d	-2.52245592103549	0.453062661337275	-3.31293337335217	0.00506321480472689	0.0210077385170668	-2.14396740548906	27	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir467d'>Mir467d</a>
-Gm10069	5.68607477678649	3.08099524867498	3.3046846231052	0.00514741011835455	0.0212796918298643	-2.27892670543982	1309	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10069'>Gm10069</a>
-Wwp1	3.00070653341197	1.74135246228108	3.28733760371041	0.00532906211683886	0.0219415999009116	-2.26148023738523	118	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wwp1'>Wwp1</a>
-Mir431	-2.52814898361935	0.729842447535775	-3.28575204794379	0.0053459813956647	0.0219415999009116	-2.20212311657876	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir431'>Mir431</a>
-1810058I24Rik	2.62271409770273	0.785774819657178	3.27879786751028	0.00542082417887067	0.0221690336490732	-2.25054020283081	50	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810058I24Rik'>1810058I24Rik</a>
-Mir1950	2.90261468429164	1.12507136246027	3.27585207867393	0.00545284200159248	0.0222203311564894	-2.2663579061757	78	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1950'>Mir1950</a>
-1700045H11Rik	2.17220411664475	-0.157703843092941	3.2269553992009	0.00601270540485873	0.0244145795976648	-2.30225973272088	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700045H11Rik'>1700045H11Rik</a>
-Mir3098	1.50327989079112	3.77759040172564	3.22488371497116	0.00603765136079478	0.0244289368888895	-2.67812879077923	259	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3098'>Mir3098</a>
-Mir92b	-1.33550563727296	3.82392790661174	-3.21643129376509	0.00614050279704137	0.0247572921958452	-2.71829841094789	237	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir92b'>Mir92b</a>
-Gm16157	2.66162389621631	-0.365224948706732	3.20356821793981	0.00630038071552899	0.0253124450578119	-2.34859094591427	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16157'>Gm16157</a>
-Snord19	0.841113010089355	7.11055248976838	3.19415039125178	0.00642005717801694	0.0257027552284819	-3.11414489267883	2203	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord19'>Snord19</a>
-Schip1	-2.57567954952992	-0.153384190338395	-3.18549465102036	0.00653204236936578	0.0260045455633494	-2.38778174828683	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Schip1'>Schip1</a>
-Snord69	0.84304704580235	7.14897332827513	3.18307678347552	0.00656366958087888	0.0260045455633494	-3.13872359988574	2301	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord69'>Snord69</a>
-Mir3061	-1.52813229940924	2.87430787227175	-3.18306594661466	0.00656381167593746	0.0260045455633494	-2.63327753238114	119	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3061'>Mir3061</a>
-Mir29a	-0.877942320051101	11.0487374837586	-3.17676979444805	0.00664688724206556	0.0262425548207502	-3.41112827127731	33081	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir29a'>Mir29a</a>
-Gm10319	2.14644292502742	-0.590132795422603	3.17164218489659	0.00671531580422408	0.0264212942504127	-2.38832170685348	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10319'>Gm10319</a>
-Mir127	-1.25650791022161	9.78648771687729	-3.16887488380797	0.00675253616433696	0.0264764390498573	-3.34593460449095	14429	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir127'>Mir127</a>
-B330016D10Rik	-1.92161264416092	-0.63693223477029	-3.1657281651115	0.0067951088367248	0.0264822665438203	-2.39563418410943	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B330016D10Rik'>B330016D10Rik</a>
-Eci2	3.49526347553937	0.0311983516108461	3.16533536523053	0.00680044180310197	0.0264822665438203	-2.47536158350563	69	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Eci2'>Eci2</a>
-Mir128-2	-2.89379537629014	0.203236815749758	-3.14346309940017	0.00710405107482255	0.0275704839332399	-2.47229052342811	35	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir128-2'>Mir128-2</a>
-Snora65	1.80564358716833	2.25630817287283	3.13994836128033	0.00715407873897124	0.0276705214954786	-2.59842313949207	83	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora65'>Snora65</a>
-Snord38a	1.14948303605283	3.92210478649851	3.12106491021558	0.00742890451562957	0.0286364190957207	-2.90862714087175	255	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord38a'>Snord38a</a>
-Snord49b	1.06413907223879	6.40649794888962	3.10982427775322	0.0075974432295226	0.0291874839221727	-3.22360916919111	1485	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord49b'>Snord49b</a>
-G630025P09Rik	2.04699188377197	-0.244188556172649	3.10780445430196	0.00762812710513572	0.0292070235804022	-2.51605087870259	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/G630025P09Rik'>G630025P09Rik</a>
-Mir329	-2.25038749201629	0.143148280966294	-3.10219089596341	0.00771405119681339	0.0294372321590772	-2.52468319230879	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir329'>Mir329</a>
-Gm5105	-2.16408947287434	-0.894252721332116	-3.09357723434137	0.00784776462691287	0.029847664797692	-2.53204083131101	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5105'>Gm5105</a>
-1700001L05Rik	2.36321176153954	-0.504303555595595	3.08655241783997	0.00795851133538617	0.0301683104108825	-2.55344737484833	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700001L05Rik'>1700001L05Rik</a>
-Snord2	0.691526499495304	8.00175923757187	3.08142494474571	0.008040321980135	0.030265949526277	-3.40026204758547	3954	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord2'>Snord2</a>
-Mir22	-0.847615802202714	16.7326675324719	-3.08005897908952	0.00806225653232276	0.030265949526277	-3.96615097802407	1751447	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir22'>Mir22</a>
-Mir22hg	-0.847524583315551	16.7327250619969	-3.07996011844832	0.00806384632426661	0.030265949526277	-3.96634849509949	1751491	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir22hg'>Mir22hg</a>
-1700012B15Rik	2.2557460290944	-0.13987829366259	3.07437268195085	0.00815420485488848	0.0305047466866484	-2.59032088872728	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700012B15Rik'>1700012B15Rik</a>
-Mir185	-1.40702024721662	4.08694622913669	-3.05877067430607	0.008411855287644	0.0313657741281105	-3.06664608794292	331	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir185'>Mir185</a>
-Slc25a44	2.21491041672761	1.66497498687079	3.04421973608031	0.00865939699909311	0.032183622071548	-2.71149512021232	77	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Slc25a44'>Slc25a44</a>
-Mir495	-1.8776791373757	-0.650811148818883	-3.04203753845606	0.00869713645483206	0.0322189373213097	-2.62552265945633	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir495'>Mir495</a>
-Sec16b	3.05043595272399	0.157027195014887	3.02828873074633	0.00893867714364734	0.0330065715886784	-2.71905679017603	57	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sec16b'>Sec16b</a>
-Mir152	-0.718432101776587	7.28616446583531	-3.01300789436766	0.00921491113521454	0.0339168180815477	-3.48441058966127	2398	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir152'>Mir152</a>
-Snora3	2.07140605143005	1.76186432056615	3.0107219189642	0.00925695325975535	0.0339620053677841	-2.78114890188917	69	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora3'>Snora3</a>
-2010003O02Rik	1.94956844186534	-0.0201000379109987	2.97528778647613	0.00993335310087066	0.0362443709129751	-2.76683258555442	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2010003O02Rik'>2010003O02Rik</a>
-Mir704	1.80973957230357	-0.756810762138252	2.9728569191809	0.00998150161417436	0.0362443709129751	-2.75225460174575	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir704'>Mir704</a>
-D130020L05Rik	2.51176492481985	1.19972413900365	2.97271570851407	0.00998430564726682	0.0362443709129751	-2.82735067383733	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D130020L05Rik'>D130020L05Rik</a>
-Mir3076	-2.06400546664394	-0.027699510367659	-2.97161874120075	0.0100061146692262	0.0362443709129751	-2.75226107651724	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3076'>Mir3076</a>
-Mirlet7c-1	-0.837889959835657	5.12475158025001	-2.96511158812865	0.0101364526370322	0.0366002925913093	-3.39152169935695	536	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7c-1'>Mirlet7c-1</a>
-Mir540	-2.19546334412823	0.490670971257216	-2.96107695486126	0.0102181042879641	0.0367787286831769	-2.78918578498352	25	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir540'>Mir540</a>
-Mir1947	-1.28776936588478	3.27191581050928	-2.95683139992983	0.0103047236916254	0.0369738670822157	-3.13442994008256	146	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1947'>Mir1947</a>
-9130019P16Rik	2.19950155178161	0.0491090861538386	2.93627487051494	0.0107344511680762	0.0383950118582288	-2.85952778968786	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9130019P16Rik'>9130019P16Rik</a>
-Mir5121	1.92484055344077	0.963995516493567	2.91681375354519	0.0111574945019998	0.0397834413336931	-2.90528656811773	37	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5121'>Mir5121</a>
-B430319G15Rik	-1.98479980231837	-0.986373420602892	-2.90027155266244	0.0115299314828684	0.0408786538511516	-2.88966321680022	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B430319G15Rik'>B430319G15Rik</a>
-Mir351	-0.833417329407842	8.58289887759314	-2.89999295816495	0.0115363072217974	0.0408786538511516	-3.79447142137588	5692	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir351'>Mir351</a>
-D330050I16Rik	1.78527438588565	-0.392012482832458	2.89505348884379	0.0116499250396066	0.0411534503721088	-2.89805092182303	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D330050I16Rik'>D330050I16Rik</a>
-BC024386	2.76807972012068	-0.350592172752806	2.88853915590151	0.0118014481853742	0.0415600382083702	-2.93769383343029	35	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BC024386'>BC024386</a>
-Mir666	-2.07579086945099	-0.498012096151827	-2.87668024285998	0.0120822641583993	0.0424180412453341	-2.935960499869	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir666'>Mir666</a>
-Mir19a	1.09579604803789	3.73141492889975	2.86437745877971	0.0123805124227085	0.0433317934794797	-3.37709843179263	223	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir19a'>Mir19a</a>
-Numb	1.68732685590953	2.04652538144382	2.86121813573409	0.0124582585716259	0.0434705597254591	-3.09454193475081	80	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Numb'>Numb</a>
-Mir743b	1.75236219547595	-0.788253108012747	2.85924586889851	0.0125070353152586	0.043507705166799	-2.96109586080316	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir743b'>Mir743b</a>
-Mir466f-3	2.69172899990669	1.87893214035262	2.85764483454932	0.012546768496086	0.0435132609545109	-3.07809643101419	134	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir466f-3'>Mir466f-3</a>
-Snora64	2.4307644292688	0.761833001151837	2.85484959589604	0.0126164349935154	0.0435532556947262	-3.03394915069077	47	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora64'>Snora64</a>
-Trmt61b	2.31260437934785	-0.537538901613448	2.85283128922496	0.0126669731509781	0.0435532556947262	-2.98304494636545	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Trmt61b'>Trmt61b</a>
-C130080G10Rik	-1.86190650840199	-1.04705177399917	-2.85259853175366	0.0126728141022341	0.0435532556947262	-2.97869388313859	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C130080G10Rik'>C130080G10Rik</a>
-Mir146	-0.747535639173072	9.8698371568429	-2.82836188364647	0.0132956711142425	0.045554137729091	-4.01615829841473	13917	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir146'>Mir146</a>
-Mir449a	-1.79604146328396	-1.07849411987367	-2.8268741085019	0.0133348659084281	0.045554137729091	-3.02729704133418	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir449a'>Mir449a</a>
-Ncaph2	2.43172128495717	0.531053368370468	2.81514840260429	0.0136477529969634	0.0464838393120456	-3.10990472720523	39	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ncaph2'>Ncaph2</a>
-Tmem41a	2.13366400352273	-0.61462282166951	2.81019216927593	0.0137821511685655	0.0468018883432536	-3.05559526679725	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tmem41a'>Tmem41a</a>
-Mir337	-2.00512882554678	1.46245475734951	-2.790176090596	0.0143381997019222	0.0484912300051582	-3.15685281038144	50	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir337'>Mir337</a>
-E430016F16Rik	-1.97871005920294	-0.986373420602892	-2.78924386549867	0.0143646237876805	0.0484912300051582	-3.09307014868296	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E430016F16Rik'>E430016F16Rik</a>
-1700003F17Rik	-2.01422348895548	0.00986412853889808	-2.78534021594328	0.0144757903878217	0.0487223505383617	-3.09728477834654	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700003F17Rik'>1700003F17Rik</a>
-5730522E02Rik	1.77943144260577	-0.402623595030772	2.78153548351825	0.0145849474469889	0.0489453677559245	-3.10514832323792	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5730522E02Rik'>5730522E02Rik</a>
-Snord32a	0.731701165103898	7.36041411624865	2.77936808794083	0.0146474880967064	0.0490110965347272	-3.93874361373315	2646	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord32a'>Snord32a</a>
-Ccl25	1.82691173511948	-0.742931848089659	2.76634551467819	0.0150287990280197	0.0501399406168728	-3.13119236947949	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ccl25'>Ccl25</a>
-Bc1	1.4447966027473	5.60396756501899	2.76417137258444	0.015093394998458	0.0502086405050747	-3.80973281446833	1034	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Bc1'>Bc1</a>
-Mir92-2	0.841738777296982	7.67150490176917	2.75570725400377	0.015347458592434	0.0509053786452535	-4.00630959541651	3238	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir92-2'>Mir92-2</a>
-Gm16023	2.83755782890821	0.231660734523689	2.74997768567304	0.0155217992534112	0.051334414342441	-3.23123254571433	61	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16023'>Gm16023</a>
-Mir463	1.7496368661484	-0.788253108012747	2.74746508869923	0.0155988599062727	0.051440170962593	-3.16503205634054	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir463'>Mir463</a>
-1810008I18Rik	2.42034344843247	-0.486051677644913	2.74392263242908	0.0157081389909388	0.0516512581805798	-3.18685172400794	25	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810008I18Rik'>1810008I18Rik</a>
-Gm16119	2.15928464558089	0.141491903029062	2.7402336372813	0.0158227303686605	0.0517925809899256	-3.22270297555294	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16119'>Gm16119</a>
-2010308F09Rik	-1.83277349898908	-0.650811148818883	-2.73961897562678	0.0158419025113795	0.0517925809899256	-3.18111223859539	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2010308F09Rik'>2010308F09Rik</a>
-Gm8883	2.16409799450603	-0.590132795422603	2.72505563686563	0.0163028203034417	0.0529872269292577	-3.21224705829732	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm8883'>Gm8883</a>
-Zfp862	2.16409799450603	-0.590132795422603	2.72505563686563	0.0163028203034417	0.0529872269292577	-3.21224705829732	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp862'>Zfp862</a>
-Snhg7	1.72599658448324	2.92713305382255	2.72369233450925	0.0163466291666071	0.0529872269292577	-3.48946421579912	173	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg7'>Snhg7</a>
-B830017H08Rik	-2.23343112594958	-0.833574367935836	-2.72209538930301	0.016398091528245	0.0530034629850638	-3.21732724703038	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B830017H08Rik'>B830017H08Rik</a>
-1810064F22Rik	2.10429563053184	-0.628239618113655	2.71233407077621	0.0167160942777747	0.0537469782312529	-3.23263196069571	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810064F22Rik'>1810064F22Rik</a>
-Mir297c	-2.59766718982369	-0.523818455835255	-2.71214450340864	0.0167223288975414	0.0537469782312529	-3.25125579861584	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir297c'>Mir297c</a>
-Mir3065	-1.15841548117293	4.89782194523564	-2.69932982501886	0.0171490634567944	0.0546270939470388	-3.86797461891443	469	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3065'>Mir3065</a>
-Mir338	-1.15841548117293	4.89782194523564	-2.69932982501886	0.0171490634567944	0.0546270939470388	-3.86797461891443	469	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir338'>Mir338</a>
-Snord12	0.862355865323009	7.21183801132978	2.69866680699734	0.017171427527834	0.0546270939470388	-4.08039835847175	2566	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord12'>Snord12</a>
-Gm16551	1.95751791415313	-0.691386427467094	2.69401162790859	0.0173292489773132	0.0546270939470388	-3.26351851959596	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16551'>Gm16551</a>
-Mir1938	-1.6694250746775	-1.13917247326995	-2.69395153729379	0.0173312953626889	0.0546270939470388	-3.27380411394135	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1938'>Mir1938</a>
-Mir384	-1.6694250746775	-1.13917247326995	-2.69395153729379	0.0173312953626889	0.0546270939470388	-3.27380411394135	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir384'>Mir384</a>
-Sec14l1	-1.6694250746775	-1.13917247326995	-2.69395153729379	0.0173312953626889	0.0546270939470388	-3.27380411394135	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sec14l1'>Sec14l1</a>
-A530013C23Rik	2.10076433042777	-0.628239618113655	2.67776214138051	0.0178912486859939	0.056236679754047	-3.29508901202161	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A530013C23Rik'>A530013C23Rik</a>
-Gm9920	1.6285204207954	-0.848931461409027	2.67099225409632	0.0181305686626977	0.0566766543675016	-3.30261681920118	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm9920'>Gm9920</a>
-Mir3096	1.6285204207954	-0.848931461409027	2.67099225409632	0.0181305686626977	0.0566766543675016	-3.30261681920118	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3096'>Mir3096</a>
-Runx2	-2.05940172171601	0.19321552216426	-2.66798439607752	0.0182378909516821	0.0568298554460666	-3.31709929184916	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Runx2'>Runx2</a>
-Mir1199	-1.80452318263558	-0.286012869513089	-2.66623221676357	0.0183006932250553	0.0568298554460666	-3.30697738722689	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1199'>Mir1199</a>
-2810013P06Rik	1.73280899888147	-0.254570523638594	2.66544441649986	0.0183289980755061	0.0568298554460666	-3.31814833648003	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2810013P06Rik'>2810013P06Rik</a>
-Mir139	-0.71676951546528	5.60987527682552	-2.6551603087927	0.0187024067912338	0.0578304773680157	-4.03578216454232	751	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir139'>Mir139</a>
-Syce2	2.36455525863438	-0.504303555595595	2.65072370278831	0.0188657609520281	0.0581779276926056	-3.35376683182341	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Syce2'>Syce2</a>
-Hsf4	1.75853048276747	-0.027699510367659	2.63272367541842	0.0195427890611213	0.060103294659675	-3.38335065718976	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Hsf4'>Hsf4</a>
-9530026P05Rik	-2.07695780402641	0.308348068257344	-2.63023447836339	0.0196382434958373	0.0602345049159956	-3.38900744489907	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9530026P05Rik'>9530026P05Rik</a>
-F730035M05Rik	1.78278284441709	0.0460524556882713	2.60073804597223	0.0208042043193282	0.0636396705853981	-3.45006336955945	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/F730035M05Rik'>F730035M05Rik</a>
-4931440P22Rik	1.81357503948527	-0.34669122290937	2.59692706678062	0.0209596355730796	0.0639437010397962	-3.44244562957201	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4931440P22Rik'>4931440P22Rik</a>
-Mir300	-1.68375330243594	3.41000156536173	-2.5819475209075	0.0215814969001033	0.0656653012347144	-3.85223959755949	222	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir300'>Mir300</a>
-Gm9961	1.6141478502722	-0.484133182103234	2.57010065554055	0.0220858578259184	0.0668716722449952	-3.48214581462349	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm9961'>Gm9961</a>
-2900060B14Rik	-1.19518787351076	3.46457469939205	-2.56923876538494	0.0221229909127292	0.0668716722449952	-3.89704508052604	185	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2900060B14Rik'>2900060B14Rik</a>
-Mir411	-1.00605950591069	6.99892994877789	-2.56852458872886	0.0221538055290168	0.0668716722449952	-4.310335894974	2196	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir411'>Mir411</a>
-Mir673	-1.3090170207406	1.82295295242957	-2.56480697753964	0.0223148777778054	0.0671801465553455	-3.62107180274171	51	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir673'>Mir673</a>
-Gm5088	-1.68701668543175	-1.13917247326995	-2.55941235619776	0.0225506148115993	0.0677111881579862	-3.51525248418991	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5088'>Gm5088</a>
-Tor2a	2.07995668744553	-0.61904848868591	2.55252291882178	0.0228551574897157	0.0684454978891487	-3.51995132920037	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tor2a'>Tor2a</a>
-Mir1929	-1.69214227634269	-1.13917247326995	-2.5510179798629	0.0229222065165283	0.0684665906684784	-3.53018502209241	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1929'>Mir1929</a>
-Gm12295	-1.69666721026032	-1.13917247326995	-2.54771186173241	0.0230701674123488	0.0687286188446215	-3.53606163444577	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12295'>Gm12295</a>
-Wdr13	-1.72526707110706	-0.147092730894626	-2.53924168587016	0.0234534382441355	0.0696884714493714	-3.52799276824936	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wdr13'>Wdr13</a>
-St7l	1.62230300798708	0.897522708635819	2.52666370286734	0.0240338880626592	0.0712277046220627	-3.60118587779941	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/St7l'>St7l</a>
-Snord88c	0.793290174312999	4.47693446317466	2.50505317099491	0.0250634970146661	0.0740866582739222	-4.17079027962479	341	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord88c'>Snord88c</a>
-9330175M20Rik	-1.65022439160042	-0.360570136957963	-2.50294066783667	0.0251663831454311	0.0741985611600436	-3.59490203212403	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330175M20Rik'>9330175M20Rik</a>
-Snora52	1.11047151370588	2.69319347264049	2.50050576985066	0.0252854729408082	0.0742992649502222	-3.88083546486857	105	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora52'>Snora52</a>
-4933405D12Rik	2.28373557503359	-0.125999379613997	2.49952793100309	0.0253334503629621	0.0742992649502222	-3.64207314883416	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933405D12Rik'>4933405D12Rik</a>
-Mir188	-1.84047092737597	1.30222680574037	-2.49825793655251	0.0253958924895589	0.0742992649502222	-3.67062190136747	41	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir188'>Mir188</a>
-Mir205	1.92476770177287	-0.714181147408868	2.49436665703146	0.0255881349007889	0.0746702350941181	-3.61910043615221	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir205'>Mir205</a>
-Mir29b-2	-1.76343390631061	1.19462262736195	-2.491486533954	0.0257313191461785	0.0747071028176607	-3.66952491758492	41	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir29b-2'>Mir29b-2</a>
-Snord100	0.630343774928686	6.02538660524635	2.49147851197563	0.0257317190248384	0.0747071028176607	-4.3727044437044	1006	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord100'>Snord100</a>
-Mir103-1	1.66401353804538	-0.178535076769122	2.48869237583317	0.0258709623692558	0.0749123841663655	-3.63209662533681	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir103-1'>Mir103-1</a>
-Snord67	1.44797500570103	2.44125660341038	2.48744103910754	0.0259337350970328	0.0749123841663655	-3.84438090974652	108	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord67'>Snord67</a>
-Mir378b	-1.87217458287095	-1.04230579272429	-2.48543799390718	0.0260345203956202	0.07501360548334	-3.63953394774132	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir378b'>Mir378b</a>
-Stap2	1.82543646576299	0.360783493796099	2.47215410233116	0.0267124555123547	0.0766751025232241	-3.68285167340431	25	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Stap2'>Stap2</a>
-Abhd1	1.9251911184693	-0.706743520940286	2.47151360035917	0.0267455659984603	0.0766751025232241	-3.65951891456996	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Abhd1'>Abhd1</a>
-Crebzf	2.18345173240976	1.01056858325673	2.46941691788336	0.0268542277090025	0.0766788467965674	-3.72491986207361	48	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Crebzf'>Crebzf</a>
-AW495222	3.12693001673928	0.217900170575655	2.46889622052332	0.0268812784562901	0.0766788467965674	-3.7522647303971	101	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AW495222'>AW495222</a>
-Lrrc28	2.42525008262091	0.708273211214943	2.46119616740811	0.0272843555867779	0.077634537966368	-3.75212597460025	60	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Lrrc28'>Lrrc28</a>
-Mir3086	-1.56502610075238	0.163979514642475	-2.45070863513763	0.0278426426188866	0.079026008030223	-3.67658416235536	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3086'>Mir3086</a>
-Gm16548	1.56554530187766	-0.880373807283523	2.43719245534725	0.028578244472197	0.0809125978728953	-3.7171315266521	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16548'>Gm16548</a>
-Vsig8	0.720909981822672	5.46827442991139	2.4297652846464	0.0289903098093856	0.081876097753735	-4.42992368125479	711	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Vsig8'>Vsig8</a>
-Mllt10	1.64313940342435	2.00106077397987	2.42643449288836	0.0291769377903763	0.0821624443172407	-3.88522168534726	76	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mllt10'>Mllt10</a>
-Snord37	0.718235154642642	5.26607014192141	2.42421441307507	0.0293019662978149	0.0821624443172407	-4.41840621005442	605	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord37'>Snord37</a>
-2310044G17Rik	1.83521282323275	0.25478388047673	2.42411236612262	0.0293077255364741	0.0821624443172407	-3.77290246486377	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310044G17Rik'>2310044G17Rik</a>
-Mir5109	1.91674990639075	5.26141207092908	2.4205606649453	0.0295088463344336	0.0825235138911489	-4.39344655492679	1282	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5109'>Mir5109</a>
-1700028E10Rik	1.54839823984953	-0.345213043484771	2.41736388881311	0.0296909918731214	0.0828298819736711	-3.7511992998099	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700028E10Rik'>1700028E10Rik</a>
-Mea1	1.54661886587012	-0.101771470971538	2.4138331460667	0.0298934095831866	0.0831911715473558	-3.76260805956638	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mea1'>Mea1</a>
-Snora74a	-1.73489546483347	1.01966577101052	-2.40803895916142	0.0302284388032876	0.0839188532227522	-3.80206412811815	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora74a'>Snora74a</a>
-Mir191	-0.655767170712639	13.5617906330993	-2.39884764518688	0.0307672305375651	0.0851401619055862	-5.06132700567092	174890	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir191'>Mir191</a>
-Mir1949	-1.81819327722704	-1.07849411987367	-2.39799614454486	0.0308176046161324	0.0851401619055862	-3.79424293296871	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1949'>Mir1949</a>
-Mir1198	1.58891563084634	1.17557415725746	2.39059542110177	0.0312587378593833	0.086150289607624	-3.8609699445768	43	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1198'>Mir1198</a>
-Cldn25	1.85104613563129	-0.734239231433024	2.38535835022853	0.0315745192814028	0.0868109072291099	-3.80901008552036	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cldn25'>Cldn25</a>
-3110045C21Rik	1.65443039841412	0.203826634362574	2.38155453756473	0.0318057752099395	0.0872365132561082	-3.82495974541955	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/3110045C21Rik'>3110045C21Rik</a>
-A330009N23Rik	-1.65876461460145	-1.13917247326995	-2.36252069958505	0.0329872919163081	0.0902246398210002	-3.86075992930999	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A330009N23Rik'>A330009N23Rik</a>
-4930412C18Rik	-1.71539919467515	-1.13917247326995	-2.36022700442918	0.0331324488036802	0.0902246398210002	-3.86472183787187	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930412C18Rik'>4930412C18Rik</a>
-Gm17769	-1.71539919467515	-1.13917247326995	-2.36022700442918	0.0331324488036802	0.0902246398210002	-3.86472183787187	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm17769'>Gm17769</a>
-Fth1	2.86103494155137	3.45595627169968	2.35821583980086	0.033260223411433	0.0903569402677262	-4.19586341531867	625	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fth1'>Fth1</a>
-4833417C18Rik	1.47974694653215	-0.544811535499514	2.35068477635695	0.0337428496416542	0.0914503359646734	-3.86474671238307	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4833417C18Rik'>4833417C18Rik</a>
-Snora61	0.958904821800182	3.29767563160608	2.349125503029	0.0338436003101147	0.0915060378053102	-4.26190631619714	164	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora61'>Snora61</a>
-Mirlet7f-2	0.650708366569944	9.71888537299185	2.34186730999564	0.0343163384594052	0.0925648751351804	-4.91362837250212	14033	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7f-2'>Mirlet7f-2</a>
-Mir484	-0.729527631490827	7.08906245513894	-2.3224356166388	0.0356128817086712	0.095835608560363	-4.76719481541216	2052	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir484'>Mir484</a>
-A630066F11Rik	1.44515529589515	-0.941052160679803	2.31716732167662	0.0359722924599672	0.0963708221549233	-3.92438209949561	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A630066F11Rik'>A630066F11Rik</a>
-A730017L22Rik	2.05481659238372	-0.239213430165402	2.31696857375682	0.0359859181283499	0.0963708221549233	-3.9446476842384	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A730017L22Rik'>A730017L22Rik</a>
-Ankrd10	1.8458518819756	-0.032400500918623	2.31581421766513	0.0360651543033762	0.0963708221549233	-3.94922969635093	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ankrd10'>Ankrd10</a>
-9330179D12Rik	-1.85045093530144	1.28320177813767	-2.31096269706071	0.0363999711565358	0.0970382408635685	-3.9951686511153	40	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330179D12Rik'>9330179D12Rik</a>
-Snora62	1.7847261774294	-0.244188556172649	2.29775908931167	0.0373260968205211	0.0992752365319687	-3.96525604386916	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora62'>Snora62</a>
-BC024582	1.59980554588654	-0.452690836228738	2.2959268866433	0.0374563520512198	0.0993899946289343	-3.96118314063755	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BC024582'>BC024582</a>
-Gm10804	1.52979741848186	-0.355824155683085	2.29375082460336	0.0376116093012649	0.0994728784445405	-3.96360070348265	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10804'>Gm10804</a>
-Mir1195	1.10164801174588	3.09590694872149	2.29304709119496	0.0376619487187042	0.0994728784445405	-4.32472042528613	144	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1195'>Mir1195</a>
-Gorasp2	1.73210701934952	0.154556788162208	2.28600861467189	0.03816892734941	0.100579090313341	-3.99587343487878	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gorasp2'>Gorasp2</a>
-5730420D15Rik	1.62853621883357	-0.848931461409027	2.27860458389794	0.0387091654979492	0.101767644776867	-3.99077412899541	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5730420D15Rik'>5730420D15Rik</a>
-Mirlet7f-1	-0.614882576643158	5.68980618928649	-2.27248837673306	0.0391608536660756	0.102718469041361	-4.74250560785076	779	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7f-1'>Mirlet7f-1</a>
-0610009L18Rik	-1.61889807816313	0.265553460945444	-2.26526136567524	0.0397009617671157	0.103777261528111	-3.99536063610116	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610009L18Rik'>0610009L18Rik</a>
-Snhg3	1.25378785890833	2.38956644178022	2.26464378812804	0.0397474393896485	0.103777261528111	-4.23895965644335	94	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg3'>Snhg3</a>
-Mir297-2	1.46684984163613	1.40872493183085	2.26345073111919	0.0398373712088629	0.103777261528111	-4.09858373085422	47	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir297-2'>Mir297-2</a>
-Etfb	2.40847795385732	0.265851908477543	2.26169079632117	0.0399703828812269	0.103886576007927	-4.07904638296427	53	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Etfb'>Etfb</a>
-Mir708	-1.85451172422601	-0.280376883322022	-2.25778324055568	0.0402671991288784	0.104420168650114	-4.0216739515904	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir708'>Mir708</a>
-Rchy1	1.62884124887726	-0.438811922180145	2.25361813300649	0.0405858566094605	0.105007851227652	-4.03354975134699	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rchy1'>Rchy1</a>
-A730056A06Rik	-1.68694694851363	-1.13917247326995	-2.24683042206407	0.0411102355769964	0.105912931059682	-4.05854864097368	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A730056A06Rik'>A730056A06Rik</a>
-4933406I18Rik	1.77699338800155	-0.768738207773087	2.24668779416224	0.0411213220503411	0.105912931059682	-4.04580334564085	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933406I18Rik'>4933406I18Rik</a>
-Mir134	-1.97599424729025	0.963837048223167	-2.23531953342299	0.0420140490275288	0.107968535901825	-4.10273890592774	40	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir134'>Mir134</a>
-0610040F04Rik	1.48024531718237	-0.126261497218445	2.21863530367332	0.0433571530862421	0.111169689149219	-4.09406770500723	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610040F04Rik'>0610040F04Rik</a>
-Hyi	1.7208723887239	-0.798864220211061	2.21727225982332	0.0434686369972673	0.111205638596148	-4.09496822692958	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Hyi'>Hyi</a>
-Mir19b-2	1.46199574456486	-0.157703843092941	2.21491518136265	0.0436620562951831	0.111450573227749	-4.09725345928943	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir19b-2'>Mir19b-2</a>
-Dnajc5	1.72175747703832	0.127791187493102	2.20641034213855	0.0443666638363991	0.112996346958329	-4.1264696449174	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnajc5'>Dnajc5</a>
-A330023F24Rik	-0.702900153988052	8.59775002327938	-2.19591230206849	0.0452510530552774	0.114819027522333	-5.09936581845105	6103	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A330023F24Rik'>A330023F24Rik</a>
-Mir5117	-0.936491371721633	3.3130102793186	-2.19552988269139	0.0452835779010078	0.114819027522333	-4.54124266085371	153	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5117'>Mir5117</a>
-Mir376a	-1.47455098239027	-0.835052547360434	-2.1925218271152	0.0455401753877667	0.11521361445109	-4.13790833966528	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir376a'>Mir376a</a>
-C530005A16Rik	1.59621643209164	-0.0517042297735718	2.19129548146478	0.0456451756588884	0.115223773068123	-4.14802186280035	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C530005A16Rik'>C530005A16Rik</a>
-Mir29c	-0.711325240372844	8.57976498765981	-2.18303555556971	0.0463582979168776	0.116551708876032	-5.12055952980097	6038	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir29c'>Mir29c</a>
-Snora17	1.61038572109377	2.63473165643875	2.18283746936672	0.046375526581699	0.116551708876032	-4.41075432236771	155	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora17'>Snora17</a>
-Gm12992	1.67719387198237	-0.452690836228738	2.17669534214676	0.04691271219153	0.117642647495683	-4.16199311590905	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12992'>Gm12992</a>
-4933425B07Rik	1.566045114104	-0.880373807283523	2.1731277221669	0.0472273890461801	0.118135825145526	-4.16761720498767	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933425B07Rik'>4933425B07Rik</a>
-4932412D23Rik	-1.44767473084559	-1.24517208658932	-2.17095503836684	0.0474199894098607	0.118135825145526	-4.19574836919915	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4932412D23Rik'>4932412D23Rik</a>
-Smpx	-1.44767473084559	-1.24517208658932	-2.17095503836684	0.0474199894098607	0.118135825145526	-4.19574836919915	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Smpx'>Smpx</a>
-Gm16833	1.43772363562533	0.00422814234783093	2.16359562114833	0.0480778206167906	0.119513710945007	-4.18236836922897	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16833'>Gm16833</a>
-Mir3089	-1.46210970943343	-1.24517208658932	-2.15543507336627	0.0488171825310707	0.120734101973115	-4.22155997764311	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3089'>Mir3089</a>
-Snora7a	1.7230694099937	1.73375263955762	2.15504822558148	0.048852492789084	0.120734101973115	-4.31592015811305	80	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora7a'>Snora7a</a>
-2310015A10Rik	1.51712536676038	-0.90486383353043	2.15439473012054	0.0489121957425213	0.120734101973115	-4.19854386809234	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310015A10Rik'>2310015A10Rik</a>
-AW112010	1.99789847267928	0.0701015602482627	2.15352220222733	0.0489920150863736	0.120734101973115	-4.22796047652863	34	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AW112010'>AW112010</a>
-Pglyrp2	2.13000407982332	-0.625897547790957	2.1382953912996	0.050404600122275	0.123947518835163	-4.23118827095858	27	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pglyrp2'>Pglyrp2</a>
-R74862	1.46156334047426	0.026537555448611	2.13628776933242	0.0505936418662866	0.124144828751469	-4.22999882095606	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/R74862'>R74862</a>
-Snora28	1.12037820753744	2.12526039705926	2.12930512434667	0.0512562751008916	0.125500879592526	-4.42817337501701	71	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora28'>Snora28</a>
-Cd40	-1.37088395935442	-1.27661443246381	-2.12752810799839	0.0514261885899383	0.125647283043083	-4.27058401928142	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cd40'>Cd40</a>
-Mug-ps1	2.13180518001054	-0.635454055345691	2.12264061264248	0.0518962135703567	0.126524742914053	-4.25630236233275	31	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mug-ps1'>Mug-ps1</a>
-A630072M18Rik	1.38270587147115	0.396971820945472	2.11893446805287	0.0522552789377958	0.127117232913158	-4.26481829202589	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A630072M18Rik'>A630072M18Rik</a>
-9430083A17Rik	1.47463750425962	-0.925695067206612	2.11783696007545	0.0523620503673834	0.127117232913158	-4.25875097666518	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9430083A17Rik'>9430083A17Rik</a>
-Mir1934	-1.57424505068045	-0.635454055345691	-2.11625143263769	0.0525166556449856	0.127221877050804	-4.25830313630768	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1934'>Mir1934</a>
-Snhg4	-1.12748951163344	1.68874582221391	-2.10271220257256	0.0538541790241838	0.130185631920749	-4.40346908432753	47	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg4'>Snhg4</a>
-Mir669e	1.4372851263053	-0.148570910319225	2.09754754034625	0.0543726361448265	0.131161052518493	-4.29239386401532	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir669e'>Mir669e</a>
-9430008C03Rik	1.75693578729127	0.363840124261666	2.09398906309311	0.054732534541466	0.131750679138845	-4.32757583432609	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9430008C03Rik'>9430008C03Rik</a>
-C030037D09Rik	1.44249836924774	-0.941052160679803	2.08964460798292	0.0551749074500188	0.132204324416187	-4.30482301369224	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C030037D09Rik'>C030037D09Rik</a>
-Wdr73	1.44249836924774	-0.941052160679803	2.08964460798292	0.0551749074500188	0.132204324416187	-4.30482301369224	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wdr73'>Wdr73</a>
-A230108P19Rik	1.49352479961928	0.250614055858426	2.08783829894219	0.0553598038831607	0.132204324416187	-4.31611624705347	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A230108P19Rik'>A230108P19Rik</a>
-B230206H07Rik	1.44241701736279	-0.941052160679803	2.08759786205388	0.0553844584320223	0.132204324416187	-4.3081590960531	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B230206H07Rik'>B230206H07Rik</a>
-Snord55	0.601021636432394	6.97866331241363	2.08546096371218	0.0556040229210925	0.132208091094402	-5.17041448286456	2070	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord55'>Snord55</a>
-Ralgps2	1.88483656314977	0.227262055965901	2.08532736079326	0.0556177771475135	0.132208091094402	-4.34269584383277	30	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ralgps2'>Ralgps2</a>
-Mir33	0.994045785258037	2.79490734914157	2.08206634259786	0.055954469010935	0.132731910897041	-4.63235497043256	118	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir33'>Mir33</a>
-Mir26a-1	-0.807612985022876	4.30478785875254	-2.07928199044436	0.0562434329588863	0.13314057470143	-4.90515725875701	302	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir26a-1'>Mir26a-1</a>
-Gm16845	1.58909272532801	0.693110936601907	2.07661019420121	0.0565220086427535	0.133523005924186	-4.35651524620671	30	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16845'>Gm16845</a>
-Gm15417	1.5342975077552	0.98095079124996	2.07236996254055	0.0569667294167582	0.134295533604382	-4.38415298913751	35	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm15417'>Gm15417</a>
-Tmem161b	1.62214843774913	-0.848931461409027	2.06567840236373	0.0576751098770028	0.135602143587659	-4.3444683065412	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tmem161b'>Tmem161b</a>
-0610039K10Rik	1.59784774087558	0.19965680974427	2.0648940719261	0.0577586693984243	0.135602143587659	-4.35652602439924	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610039K10Rik'>0610039K10Rik</a>
-E230016K23Rik	-1.72852657300674	-1.13917247326995	-2.05875394572702	0.0584166748798269	0.136730583937275	-4.37016708474507	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E230016K23Rik'>E230016K23Rik</a>
-2900056M20Rik	-1.65506739394547	-0.558690449548107	-2.05452050389929	0.0588743595154887	0.136730583937275	-4.36084200194152	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2900056M20Rik'>2900056M20Rik</a>
-Mir671	0.562605162336286	5.98852427457086	2.05429817680062	0.0588984865622872	0.136730583937275	-5.14108074312137	973	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir671'>Mir671</a>
-4931408D14Rik	1.96514847475323	-0.696132408741971	2.05392305419837	0.0589392156613288	0.136730583937275	-4.36610698383729	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4931408D14Rik'>4931408D14Rik</a>
-Gm16998	1.69004828050554	0.625421285257375	2.05268667282661	0.0590736396779562	0.136730583937275	-4.40968404758219	28	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16998'>Gm16998</a>
-Gm16880	1.44362454501385	-0.941052160679803	2.05264516314336	0.0590781576521265	0.136730583937275	-4.36487132437809	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16880'>Gm16880</a>
-Gm20605	1.44362454501385	-0.941052160679803	2.05264516314336	0.0590781576521265	0.136730583937275	-4.36487132437809	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm20605'>Gm20605</a>
-Angel2	2.00212254672889	-0.0888847843510248	2.04370859875966	0.0600582524306836	0.13871754255751	-4.40649208108809	28	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Angel2'>Angel2</a>
-Mir3082	-0.840503124788145	2.98078155227528	-2.04091866162716	0.0603672767363008	0.139149621729534	-4.74512204880153	112	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3082'>Mir3082</a>
-4930556M19Rik	1.91670992783053	-0.130687164234845	2.03879415031149	0.0606035740806922	0.139412657310624	-4.40877400780406	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930556M19Rik'>4930556M19Rik</a>
-Rian	-1.1485219400328	2.35394460295566	-2.03597388605946	0.0609185674267399	0.139771726308962	-4.63934157315238	88	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rian'>Rian</a>
-Mir410	-0.901221750135118	3.70006848443484	-2.03462058748079	0.0610702490918199	0.139771726308962	-4.88099717429878	208	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir410'>Mir410</a>
-3110039I08Rik	-1.63610179345525	-1.18449373319304	-2.03411361106907	0.0611271616373111	0.139771726308962	-4.41449053166305	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/3110039I08Rik'>3110039I08Rik</a>
-Jpx	1.4439778868564	-0.386376496641391	2.0256963387538	0.0620792090771524	0.141664755114062	-4.40640628270017	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Jpx'>Jpx</a>
-Ranbp3	1.65127100064997	0.13253716876798	2.01854426538914	0.0628988113300898	0.143248590274716	-4.43559297253071	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ranbp3'>Ranbp3</a>
-Ano4	-1.60469225892927	-0.386376496641391	-2.01415852435434	0.0634062900341383	0.144116687109466	-4.41831749461231	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ano4'>Ano4</a>
-Raver1-fdx1l	1.84484701704264	0.152704788521028	2.00550228504778	0.0644189220532073	0.146127216824472	-4.45962561575273	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Raver1-fdx1l'>Raver1-fdx1l</a>
-Mir1191	1.82343613876431	0.355147507605031	2.00159544245338	0.064880780262737	0.14678508924003	-4.47205950977787	34	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1191'>Mir1191</a>
-Snord42a	-1.13379631100394	4.75607203025783	-2.00076940150347	0.0649788196577846	0.14678508924003	-5.09261777286222	438	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord42a'>Snord42a</a>
-Elmo1	-1.44814767972568	-0.848931461409027	-1.99979301527205	0.0650948774368582	0.14678508924003	-4.45311869203765	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Elmo1'>Elmo1</a>
-B430010I23Rik	1.34949047728334	-0.986373420602892	1.99444973304055	0.0657333644405924	0.147932482892931	-4.45809589212282	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B430010I23Rik'>B430010I23Rik</a>
-Zfp809	1.61960355427207	-0.452690836228738	1.9814089454698	0.0673157207393185	0.151195349140871	-4.47945908882588	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp809'>Zfp809</a>
-2310050B05Rik	-1.59274071576353	-0.590132795422603	-1.97545789269397	0.0680492897692784	0.152490055886233	-4.48612649748884	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310050B05Rik'>2310050B05Rik</a>
-Gm19705	-1.53197912631465	-1.24517208658932	-1.97349298532553	0.0682930925134662	0.152490055886233	-4.5170833713595	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm19705'>Gm19705</a>
-Mir701	-1.53197912631465	-1.24517208658932	-1.97349298532553	0.0682930925134662	0.152490055886233	-4.5170833713595	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir701'>Mir701</a>
-F630028O10Rik	-0.622888913014848	5.94290954470824	-1.96287969360653	0.0696237734116029	0.154761005415237	-5.29318401111469	928	<a href='http://www.genecards.org/index.php?path=/Search/keyword/F630028O10Rik'>F630028O10Rik</a>
-Mir223	-0.622888913014848	5.94290954470824	-1.96287969360653	0.0696237734116029	0.154761005415237	-5.29318401111469	928	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir223'>Mir223</a>
-Snord71	0.746584913495821	4.40398042673262	1.96214265492746	0.0697170523956459	0.154761005415237	-5.10586352740556	341	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord71'>Snord71</a>
-Mir3087	-1.55280633805545	-0.590132795422603	-1.94082835991025	0.0724641808981051	0.160546855154831	-4.54065638515475	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3087'>Mir3087</a>
-Gm12718	1.35418552228114	-0.986373420602892	1.93287179314716	0.073514592902694	0.162558431205376	-4.55523156925391	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12718'>Gm12718</a>
-AF357359	-1.68799855890395	1.29585702757533	-1.92491777610303	0.0745784347261457	0.163934632876851	-4.62972173041495	55	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AF357359'>AF357359</a>
-Gm10125	-1.45199246964296	-0.848931461409028	-1.92479193749794	0.0745953769075101	0.163934632876851	-4.57142675996109	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10125'>Gm10125</a>
-Tmem179b	1.72738705406917	-0.803788399998572	1.92472040076264	0.0746050097519669	0.163934632876851	-4.56937203477109	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tmem179b'>Tmem179b</a>
-5430405H02Rik	1.78645846006788	-0.165684653346019	1.92319520065518	0.0748106549472968	0.163934632876851	-4.58774074751784	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5430405H02Rik'>5430405H02Rik</a>
-Snora20	1.38262094231094	0.0963488416186067	1.92286428347317	0.0748553406913579	0.163934632876851	-4.56861037921303	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora20'>Snora20</a>
-4930519F09Rik	-1.5565120089996	-1.23129317254072	-1.9216903287951	0.0750140617025739	0.163967518012714	-4.59735520927714	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930519F09Rik'>4930519F09Rik</a>
-Snord15a	1.10276132756029	1.79014108710226	1.91104926615851	0.0764666941361036	0.166823131948937	-4.72655247154268	57	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord15a'>Snord15a</a>
-Dmr	1.68073345913718	-0.8263599307038	1.89430363868892	0.0788041640078884	0.171285514017207	-4.61631543051433	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dmr'>Dmr</a>
-A930005H10Rik	1.49847756821754	-0.371019403168199	1.89424576390839	0.0788123530754021	0.171285514017207	-4.61401782584198	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A930005H10Rik'>A930005H10Rik</a>
-C920021L13Rik	1.45659708523928	0.785774819657178	1.89280562125827	0.0790163750358231	0.171402440904704	-4.64971051817534	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C920021L13Rik'>C920021L13Rik</a>
-4931403E22Rik	1.70378545689415	-0.814059467696176	1.88880372983809	0.079585814935806	0.172310085088719	-4.62498282958674	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4931403E22Rik'>4931403E22Rik</a>
-Mir1964	-0.871113074799274	2.86663339631991	-1.88648279477582	0.0799177575555235	0.172701063202372	-4.9744960348716	105	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1964'>Mir1964</a>
-2410004N09Rik	2.12780696213311	-0.132941404588628	1.87600039224749	0.0814325355366182	0.175611886412351	-4.66535335652261	50	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2410004N09Rik'>2410004N09Rik</a>
-4930545L23Rik	1.35692949813202	-0.986373420602892	1.87504023129734	0.0815725677463155	0.175611886412351	-4.6448850582387	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930545L23Rik'>4930545L23Rik</a>
-C330022C24Rik	1.66684006383984	-0.832108206363072	1.87245175628895	0.0819511559395892	0.176094668412564	-4.64990032998496	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C330022C24Rik'>C330022C24Rik</a>
-Gm7854	1.41521331892746	0.409161384184755	1.87132675965834	0.0821161885893659	0.176117615000877	-4.66097795086114	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm7854'>Gm7854</a>
-Zfp410	1.71265563446791	-0.233577443974335	1.86771686993171	0.0826477630092813	0.176925136198105	-4.66576692182148	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp410'>Zfp410</a>
-Srsf3	1.22390265356443	1.85404652627685	1.85691167526583	0.0842573902310767	0.180033112834567	-4.81976844441289	57	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Srsf3'>Srsf3</a>
-Mir466n	1.94888590100719	1.13742198871721	1.85224203398279	0.084961673426306	0.181198634354047	-4.7515811957887	64	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir466n'>Mir466n</a>
-Ldha	1.23623349077625	1.31382141784026	1.85067176230469	0.0851996867355077	0.181367243591818	-4.75855841349533	43	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ldha'>Ldha</a>
-Jmjd4	1.44086756566094	-0.101771470971538	1.84911253075739	0.0854366173626727	0.181532924414915	-4.69022441726304	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Jmjd4'>Jmjd4</a>
-Snord90	1.29002743641748	2.8519744150179	1.84711128368238	0.0857415782389845	0.181842269090486	-5.00704775229682	171	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord90'>Snord90</a>
-Apol7d	1.22452963991045	-1.04705177399917	1.84402849240442	0.0862132574777033	0.182165419966777	-4.69431475678792	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Apol7d'>Apol7d</a>
-Gm13944	1.22452963991045	-1.04705177399917	1.84402849240442	0.0862132574777033	0.182165419966777	-4.69431475678792	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm13944'>Gm13944</a>
-Snora68	0.821345299486193	3.6276738274756	1.84196855216361	0.0865297291862233	0.182496157119188	-5.16790668162727	213	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora68'>Snora68</a>
-Mir3470a	1.39115943125415	1.51311326753652	1.83385231031511	0.0877867742768492	0.184805736992408	-4.80714219046788	61	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3470a'>Mir3470a</a>
-1700042O10Rik	1.25969390520503	-1.03317285995058	1.82371980602793	0.0893789810710051	0.186983832297381	-4.72463210359103	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700042O10Rik'>1700042O10Rik</a>
-Cox18	1.25969390520503	-1.03317285995058	1.82371980602793	0.0893789810710051	0.186983832297381	-4.72463210359103	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cox18'>Cox18</a>
-2010310C07Rik	1.30127564765566	-0.600743907620917	1.82236178655336	0.0895943251318701	0.186983832297381	-4.72220804437159	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2010310C07Rik'>2010310C07Rik</a>
-9530080O11Rik	1.2333343214217	-1.04705177399917	1.82206906601016	0.0896408030382712	0.186983832297381	-4.72761567183742	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9530080O11Rik'>9530080O11Rik</a>
-Gm10658	1.2333343214217	-1.04705177399917	1.82206906601016	0.0896408030382712	0.186983832297381	-4.72761567183742	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10658'>Gm10658</a>
-AV039307	1.68466781700848	-0.822165860739921	1.8179655824626	0.0902946176139629	0.188003939229072	-4.7329903325485	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AV039307'>AV039307</a>
-Mir653	1.31080939375484	-0.0354571313841903	1.81352557566678	0.0910068355861608	0.18914171111805	-4.73339615516883	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir653'>Mir653</a>
-Snord15b	0.765111056122759	3.75912830759914	1.811253812561	0.0913731790974714	0.189557813364027	-5.24290697168161	219	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord15b'>Snord15b</a>
-A330032B11Rik	1.15351830091647	-0.544811535499514	1.805581783419	0.092293585640648	0.191024884842792	-4.74543310731249	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A330032B11Rik'>A330032B11Rik</a>
-Gpr137b-ps	-1.34164266279755	-0.941052160679803	-1.80483613693327	0.0924151940694311	0.191024884842792	-4.76257477080841	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gpr137b-ps'>Gpr137b-ps</a>
-Gm3230	1.32839510964763	-0.996984532801206	1.80296443093399	0.0927210811440096	0.191159424553245	-4.75462931995263	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm3230'>Gm3230</a>
-BC090627	-1.21125462055415	1.58389205620882	-1.80195893201754	0.0928857782098881	0.191159424553245	-4.85973163462932	47	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BC090627'>BC090627</a>
-Mir1981	0.697255970236885	4.21228670526814	1.80136677676051	0.0929828927493876	0.191159424553245	-5.33355766780014	295	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1981'>Mir1981</a>
-2700069I18Rik	1.2258276117016	-1.04705177399917	1.79737646930347	0.0936396672658505	0.192163417896287	-4.7647729602822	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2700069I18Rik'>2700069I18Rik</a>
-1700018L02Rik	1.60638305633868	-0.05968504002665	1.79496471819782	0.0940386190778224	0.192635663137873	-4.77706326738907	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700018L02Rik'>1700018L02Rik</a>
-Rnu12	1.34545573987153	3.12465170168855	1.79074555187797	0.0947401853209974	0.193675928813183	-5.15435248901701	212	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rnu12'>Rnu12</a>
-Aes	1.97580787988901	1.50102830623892	1.7898725456979	0.0948859283142588	0.193675928813183	-4.87690265891261	113	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Aes'>Aes</a>
-AW011738	1.35994322320792	-0.986373420602892	1.78331122652731	0.0959876815075987	0.195574901071732	-4.78377188602086	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AW011738'>AW011738</a>
-Mir1247	0.717962491463309	4.29587920045115	1.77899645447695	0.09671837092938	0.196712408610379	-5.37990996340849	300	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1247'>Mir1247</a>
-Snora26	1.32536884557828	-0.188256184051246	1.77664788038335	0.0971181605178584	0.197174058987325	-4.79082437782362	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora26'>Snora26</a>
-C130046K22Rik	-1.66206124112149	-0.401145415606174	-1.77343531333303	0.0976673947466025	0.197936940330148	-4.79605188690242	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C130046K22Rik'>C130046K22Rik</a>
-4930546K05Rik	1.23872623697392	-1.04705177399917	1.76682617714789	0.0988059745301037	0.199889391735547	-4.81031354370822	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930546K05Rik'>4930546K05Rik</a>
-Mir199a-1	1.28133340693594	0.249147894285663	1.75988001617421	0.100015250730246	0.201977701032231	-4.81578597695043	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir199a-1'>Mir199a-1</a>
-Mir434	-0.892989649406754	5.12926720938992	-1.7580843415124	0.100329984081606	0.202255321266984	-5.5313213323858	623	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir434'>Mir434</a>
-Snord53	0.741893342123238	4.09583299151738	1.75305135186545	0.101216797040749	0.203683184168421	-5.3852498459864	290	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord53'>Snord53</a>
-Mir466g	1.83795214574926	0.185777895695677	1.74292337320769	0.103022330922592	0.206606620810476	-4.86892478985408	38	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir466g'>Mir466g</a>
-D930015M05Rik	1.30968823250333	0.15849335658765	1.7428712395644	0.103031697845014	0.206606620810476	-4.83950381088453	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D930015M05Rik'>D930015M05Rik</a>
-Mir532	0.395164755537383	7.64371024412024	1.7408125217348	0.103402190719686	0.206985788791511	-5.7782897714965	3010	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir532'>Mir532</a>
-Mir103-2	0.773766228848679	2.45632927480254	1.73913662142218	0.103704656419595	0.207227693475933	-5.11879080206363	81	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir103-2'>Mir103-2</a>
-1810014B01Rik	1.26181707046536	-1.03317285995058	1.73762861899304	0.103977485505656	0.207409634548871	-4.85288674502469	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810014B01Rik'>1810014B01Rik</a>
-Snora69	1.22315416187213	0.909823171643444	1.73588809106924	0.104293168525467	0.207676274498356	-4.89225702628115	33	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora69'>Snora69</a>
-Zc3h14	1.41408821776149	0.00675479495901958	1.72847661834252	0.105646860853607	0.21000534535534	-4.86420908405344	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zc3h14'>Zc3h14</a>
-Nkx6-2	-1.27800503999609	-0.941052160679803	-1.7146791107628	0.108208119548433	0.214722546790891	-4.8960301602504	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nkx6-2'>Nkx6-2</a>
-Mir26b	0.351712467695003	11.5635032907349	1.7045779906641	0.110117579874109	0.21763806583767	-6.09597193580631	46666	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir26b'>Mir26b</a>
-Mir299	-0.955766682393671	1.55229988219809	-1.70455586992184	0.110121793629752	0.21763806583767	-5.00394219885035	43	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir299'>Mir299</a>
-Mir3068	-0.644710617273588	4.67886513002661	-1.70302081836154	0.110414548820487	0.21763806583767	-5.55943820497418	431	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3068'>Mir3068</a>
-4930512B01Rik	1.20898643105347	-0.682253494693378	1.70288569810342	0.110440350674856	0.21763806583767	-4.89782103905022	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930512B01Rik'>4930512B01Rik</a>
-Fam187b	1.23742378935899	-1.04705177399917	1.69414248393857	0.112121161065231	0.220569387543842	-4.9166784968792	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fam187b'>Fam187b</a>
-Scarna13	1.31946224597966	-0.590132795422603	1.68885863838395	0.113147737124684	0.221824000101829	-4.91936341824324	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna13'>Scarna13</a>
-Snhg10	1.31946224597966	-0.590132795422603	1.68885863838395	0.113147737124684	0.221824000101829	-4.91936341824324	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg10'>Snhg10</a>
-Gm10791	1.38935319993587	-0.966858520363231	1.68575319044044	0.113754902225617	0.222389287455916	-4.92671603809347	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10791'>Gm10791</a>
-H2-K2	1.16076121091899	-1.07849411987367	1.68539104137817	0.113825892966043	0.222389287455916	-4.93053846380363	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/H2-K2'>H2-K2</a>
-Mir676	-0.437089730569779	6.48681209189413	-1.6806647861103	0.114755912374217	0.223823070117918	-5.77991725097014	1363	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir676'>Mir676</a>
-Rcbtb2	1.34162849838235	0.642696874272247	1.67798906730309	0.115285364113241	0.22447201442527	-4.95274844960655	29	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rcbtb2'>Rcbtb2</a>
-5730422E09Rik	1.18020228563473	-0.696132408741971	1.67428783670958	0.116021244081938	0.224957555323422	-4.93882350178396	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5730422E09Rik'>5730422E09Rik</a>
-Ythdf3	1.18280803863615	1.44825173729247	1.6741256859047	0.116053576278149	0.224957555323422	-5.03651124662328	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ythdf3'>Ythdf3</a>
-C730027H18Rik	1.17258184372084	-1.07849411987367	1.67277419424211	0.116323363401244	0.224957555323422	-4.94864972108029	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C730027H18Rik'>C730027H18Rik</a>
-Gm8615	1.17258184372084	-1.07849411987367	1.67277419424211	0.116323363401244	0.224957555323422	-4.94864972108029	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm8615'>Gm8615</a>
-2900009J06Rik	1.34828416289482	-0.986373420602892	1.66877503516158	0.117124882491955	0.226124350124061	-4.9510598544989	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2900009J06Rik'>2900009J06Rik</a>
-Rnf44	2.04490507739992	1.01150037846895	1.66529647991714	0.117825963606828	0.227093622424646	-5.02208296723603	88	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rnf44'>Rnf44</a>
-A630010A05Rik	-1.25675269332335	0.631280460684989	-1.66260430434796	0.118371056366922	0.227453417799216	-4.9530858854327	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A630010A05Rik'>A630010A05Rik</a>
-Rad51d	1.39060859991726	2.02739737762503	1.66240581191988	0.118411332316156	0.227453417799216	-5.13161638361473	92	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rad51d'>Rad51d</a>
-Gm12359	1.48198839903639	0.110062763084683	1.65776269040705	0.119356866775459	0.228884344522352	-4.96622809648743	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12359'>Gm12359</a>
-4933417D19Rik	1.18269745295452	-1.07849411987367	1.65430499284386	0.120065250928896	0.229856461929313	-4.97500052644218	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933417D19Rik'>4933417D19Rik</a>
-Gm9895	1.21903665624816	-0.63693223477029	1.65194097135226	0.120551668835456	0.230401095713995	-4.97151843176298	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm9895'>Gm9895</a>
-1110020A21Rik	1.25194593270892	-0.49237610996076	1.63876864711163	0.123293382787791	0.235247073178712	-4.9892549623361	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1110020A21Rik'>1110020A21Rik</a>
-Alg11	1.32531249978621	-0.590132795422603	1.6361767652414	0.123839170710122	0.235510431606847	-4.99444823996257	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Alg11'>Alg11</a>
-Vaultrc5	-0.448072317249509	7.10631262637587	-1.63615281653852	0.123844223456712	0.235510431606847	-5.89478683307987	2022	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Vaultrc5'>Vaultrc5</a>
-Mir3060	-1.21202833172584	0.27171942499089	-1.6351645637142	0.124052882574934	0.235514707184691	-4.96812309442586	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3060'>Mir3060</a>
-Mir1955	1.13186286307835	-0.682253494693378	1.63345540817796	0.124414470052149	0.235669705476309	-4.9969826223679	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1955'>Mir1955</a>
-Gm14005	-1.44880310133897	0.48022170504698	-1.63282712337373	0.124547618231564	0.235669705476309	-4.99064879469161	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm14005'>Gm14005</a>
-C730036E19Rik	1.2943846006491	-1.01217978028632	1.63063554865266	0.125013028232036	0.236158717239657	-5.00596783361666	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C730036E19Rik'>C730036E19Rik</a>
-4930405P13Rik	1.34966504178449	-0.986373420602892	1.62725241064407	0.125734431753086	0.236979623633452	-5.00991537352707	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930405P13Rik'>4930405P13Rik</a>
-Dancr	1.3062030182448	1.18459288047694	1.62665135682264	0.125862972762377	0.236979623633452	-5.07677615617175	48	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dancr'>Dancr</a>
-Ankrd11	1.37844840409545	1.82869495288249	1.62469304300553	0.126282563660683	0.237377932680131	-5.15746897731049	86	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ankrd11'>Ankrd11</a>
-2610020C07Rik	1.50920105232855	-0.317940522228579	1.6135231103667	0.128698986652833	0.241522275938952	-5.03116671787619	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610020C07Rik'>2610020C07Rik</a>
-1600002D24Rik	-1.25321204977434	-0.756810762138252	-1.61125552509827	0.12919437339977	0.242053826024856	-5.03110633443407	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1600002D24Rik'>1600002D24Rik</a>
-BC031361	1.03166169729911	-1.13917247326995	1.608779945121	0.129737072495046	0.242672130683356	-5.043580985531	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BC031361'>BC031361</a>
-5730408K05Rik	1.05171391832391	-1.13917247326995	1.60382914837461	0.130828274941307	0.244312703286467	-5.05048396234822	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5730408K05Rik'>5730408K05Rik</a>
-4833422C13Rik	1.56072686239259	0.473647969476496	1.59330634063312	0.133173818859074	0.248286482546083	-5.0792948158275	34	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4833422C13Rik'>4833422C13Rik</a>
-Mir15b	-0.423479234767332	6.16430836474156	-1.59205186812547	0.133455834392276	0.248406373640436	-5.88344797905857	1064	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir15b'>Mir15b</a>
-Snord17	0.588180610794611	6.40434740068647	1.5909226382288	0.133710132153462	0.248415310064625	-5.90270306066359	1360	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord17'>Snord17</a>
-2700089E24Rik	1.9346637528719	0.708144926037837	1.59009813142159	0.13389606984202	0.248415310064625	-5.10719912908875	70	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2700089E24Rik'>2700089E24Rik</a>
-1300002E11Rik	1.66663408255978	-0.437333742755547	1.58582291431296	0.134863747546901	0.249804441478919	-5.0690582710292	28	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1300002E11Rik'>1300002E11Rik</a>
-4930474G06Rik	-1.090892671974	-1.03317285995058	-1.58193904835456	0.135748030192849	0.250441466610603	-5.09374604062072	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930474G06Rik'>4930474G06Rik</a>
-A430093F15Rik	-1.090892671974	-1.03317285995058	-1.58193904835456	0.135748030192849	0.250441466610603	-5.09374604062072	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A430093F15Rik'>A430093F15Rik</a>
-Rreb1	1.35338804346774	2.10846654001091	1.58142192959551	0.135866141833447	0.250441466610603	-5.26419259030567	113	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rreb1'>Rreb1</a>
-Mir485	-1.2897278302183	-0.360570136957963	-1.57792310950414	0.136667596032013	0.250873719680857	-5.05792690495308	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir485'>Mir485</a>
-Adam17	1.1761458064096	0.445349711334128	1.57783328945761	0.136688223694767	0.250873719680857	-5.07292679688905	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Adam17'>Adam17</a>
-Mir154	-1.41177845571614	0.000731195765182737	-1.57751972062112	0.136760257354508	0.250873719680857	-5.05355498603271	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir154'>Mir154</a>
-1700034P13Rik	1.03573302470771	-1.13917247326995	1.5706655582452	0.138342934232158	0.251258367802273	-5.09634899411597	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700034P13Rik'>1700034P13Rik</a>
-Fam120aos	1.03573302470771	-1.13917247326995	1.5706655582452	0.138342934232158	0.251258367802273	-5.09634899411597	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fam120aos'>Fam120aos</a>
-1700102H20Rik	-1.01261850877746	-1.42941348513087	-1.56975595848976	0.138554138577694	0.251258367802273	-5.13526440107113	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700102H20Rik'>1700102H20Rik</a>
-9230112J17Rik	-1.01261850877746	-1.42941348513087	-1.56975595848976	0.138554138577694	0.251258367802273	-5.13526440107113	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9230112J17Rik'>9230112J17Rik</a>
-Mir3100	-1.01261850877746	-1.42941348513087	-1.56975595848976	0.138554138577694	0.251258367802273	-5.13526440107113	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3100'>Mir3100</a>
-Mir294	1.03626141233244	-1.13917247326995	1.56969188750367	0.138569025899642	0.251258367802273	-5.09768561064634	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir294'>Mir294</a>
-Snora70	1.03626141233244	-1.13917247326995	1.56969188750367	0.138569025899642	0.251258367802273	-5.09768561064634	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora70'>Snora70</a>
-Mir129-1	1.05464886354904	-1.13917247326995	1.56899253420323	0.138731614123954	0.251258367802273	-5.09864530153619	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir129-1'>Mir129-1</a>
-Gm10516	1.05631363335724	-1.13917247326995	1.56670193467872	0.139265281483992	0.251825176185792	-5.1017865162441	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10516'>Gm10516</a>
-4930451G09Rik	1.06510899754063	-1.13917247326995	1.56184533087519	0.140402574895956	0.252848126899102	-5.10843610513404	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930451G09Rik'>4930451G09Rik</a>
-4933421O10Rik	1.06510899754063	-1.13917247326995	1.56184533087519	0.140402574895956	0.252848126899102	-5.10843610513404	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933421O10Rik'>4933421O10Rik</a>
-St5	1.16930236967868	0.570831252021079	1.5614487016406	0.140495804078905	0.252848126899102	-5.1040121162741	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/St5'>St5</a>
-Snhg6	0.414987169877994	6.88812749706196	1.55780210312341	0.141355425161323	0.25372730599006	-5.98952812049796	1762	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg6'>Snhg6</a>
-Senp2	1.23316924476294	-1.04230579272429	1.55749058186328	0.141429068018999	0.25372730599006	-5.10845162064594	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Senp2'>Senp2</a>
-Mir3069	1.1967490330554	-0.650811148818883	1.55602233545589	0.141776597800618	0.25395148836814	-5.10475733476948	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3069'>Mir3069</a>
-Snord87	0.414265796353463	6.8857147404585	1.55208332473347	0.142712543117168	0.255227291060641	-5.99741848701943	1759	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord87'>Snord87</a>
-4932702P03Rik	1.50538536018542	-0.190947829244951	1.54735549642484	0.143842852742846	0.256846158027523	-5.12545513466049	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4932702P03Rik'>4932702P03Rik</a>
-Mir341	-1.11910417431075	-0.268449437687187	-1.54504024071338	0.144399143660684	0.257436598307563	-5.09444510471904	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir341'>Mir341</a>
-Fam19a2	-1.08108870526458	-1.03317285995058	-1.54274205574173	0.144953138847169	0.258021109866802	-5.14743110946704	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fam19a2'>Fam19a2</a>
-Mir2137	-1.25397648150412	-0.986373420602892	-1.53902949676667	0.145851890715621	0.259216522284305	-5.1478345461744	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir2137'>Mir2137</a>
-D130009I18Rik	1.27231702999427	-0.381630515366513	1.53514141676594	0.146798196085364	0.260339335086546	-5.13021329550442	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D130009I18Rik'>D130009I18Rik</a>
-Elp3	-1.44496494213962	1.49755589579473	-1.53456064882656	0.146939992809584	0.260339335086546	-5.2298474338907	55	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Elp3'>Elp3</a>
-Six3os1	-1.3837215389721	-1.31472125515486	-1.53340154891498	0.147223338498394	0.260436944537469	-5.17353312572401	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Six3os1'>Six3os1</a>
-Rmst	-1.34494122456533	-0.508623208350141	-1.52875491880875	0.148363873123417	0.262048265067831	-5.13210633012727	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rmst'>Rmst</a>
-4930564K09Rik	1.15715309457904	-1.07849411987367	1.51860435848876	0.150881394880579	0.266082954495736	-5.16248906856691	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930564K09Rik'>4930564K09Rik</a>
-Gm16793	1.16848451363027	-1.0728581336826	1.51349594367936	0.152161963356188	0.267725701552132	-5.16901059939246	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16793'>Gm16793</a>
-Mir200c	1.09203191538954	1.0686845390219	1.51301819802264	0.152282191329828	0.267725701552132	-5.21562223006706	43	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir200c'>Mir200c</a>
-Mir500	-0.959184822315059	1.55556768404836	-1.50996567016574	0.153052273761653	0.268308865049533	-5.27805724838699	47	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir500'>Mir500</a>
-Brd2	1.15193277255657	1.46278337085446	1.5098394012633	0.153084199077341	0.268308865049533	-5.26772609337448	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Brd2'>Brd2</a>
-1700061I17Rik	-0.993032112528657	-1.07849411987367	-1.5078450002038	0.153589200235581	0.268618908035033	-5.19885089576796	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700061I17Rik'>1700061I17Rik</a>
-2010009K17Rik	1.39848757206625	0.0129207590044654	1.50658142705804	0.153909874663779	0.268618908035033	-5.1753515727655	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2010009K17Rik'>2010009K17Rik</a>
-4930549G23Rik	1.15784945023494	-1.07849411987367	1.50450440196419	0.154438215311991	0.268618908035033	-5.18132752967772	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930549G23Rik'>4930549G23Rik</a>
-Arfrp1	1.15784945023494	-1.07849411987367	1.50450440196419	0.154438215311991	0.268618908035033	-5.18132752967772	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Arfrp1'>Arfrp1</a>
-Gm16675	1.15784945023494	-1.07849411987367	1.50450440196419	0.154438215311991	0.268618908035033	-5.18132752967772	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16675'>Gm16675</a>
-9230116N13Rik	1.06454128715679	-1.13917247326995	1.50290619358259	0.154845796366435	0.268917889884478	-5.18797830371707	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9230116N13Rik'>9230116N13Rik</a>
-4930515G01Rik	0.992431794232819	-0.788253108012747	1.49297552868103	0.157398682710309	0.272936013635962	-5.18861224143696	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930515G01Rik'>4930515G01Rik</a>
-Mir381	-0.585788303821621	4.02795786800028	-1.48635287193065	0.159120749771416	0.275503452942618	-5.77368217940814	263	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir381'>Mir381</a>
-Mir377	-1.26023741335144	-0.742931848089659	-1.46946309676428	0.163584151533594	0.282783957164269	-5.22241603606054	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir377'>Mir377</a>
-Slc25a43	-1.17913476508088	-1.42941348513087	-1.46857624117987	0.163821380968959	0.282783957164269	-5.27142485692471	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Slc25a43'>Slc25a43</a>
-Gm15850	-1.19142307125329	-1.42941348513087	-1.46628124024459	0.164436616186004	0.283417188924819	-5.27443785148495	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm15850'>Gm15850</a>
-4930577N17Rik	0.996261471651621	-0.788253108012747	1.46486383853075	0.164817550391935	0.283645286571943	-5.22556084614497	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930577N17Rik'>4930577N17Rik</a>
-Gm1976	1.17098543636347	-1.0728581336826	1.46338871742997	0.165214778610828	0.283900696377943	-5.23522027677804	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm1976'>Gm1976</a>
-Gnas	1.20481163504504	3.01946961304055	1.44714466040454	0.169642076912222	0.291070089859918	-5.63385665345255	198	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gnas'>Gnas</a>
-Trpc4	-1.12214295081842	-0.63693223477029	-1.44324497998824	0.170719487323175	0.292478881435048	-5.24590464097049	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Trpc4'>Trpc4</a>
-Mir1839	0.440343224508104	6.65996421341352	1.43932422020417	0.171808441988587	0.293903196865034	-6.13404680514468	1655	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1839'>Mir1839</a>
-Gm16861	1.02101890973297	0.0237430425874912	1.4372048018983	0.172399485659686	0.294472774158237	-5.24662386648199	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16861'>Gm16861</a>
-Rnu73b	0.921794509533217	1.40212948737186	1.43527079633787	0.17294029293129	0.294954968960541	-5.35714724474774	44	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rnu73b'>Rnu73b</a>
-9330162012Rik	1.1439446656217	-0.676617508502311	1.43366062517497	0.173391617780733	0.295283337145994	-5.26641582277432	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330162012Rik'>9330162012Rik</a>
-1700008J07Rik	1.13211025049156	-0.682253494693378	1.43155460784931	0.173983398326015	0.295849564068529	-5.26903519525208	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700008J07Rik'>1700008J07Rik</a>
-Snora23	1.20628823206499	-0.684171990235058	1.42281586307131	0.176456826615396	0.299171979403534	-5.28019781733805	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora23'>Snora23</a>
-4930506C21Rik	0.970252362879898	-0.392012482832458	1.42250461225319	0.176545456709643	0.299171979403534	-5.27331937270512	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930506C21Rik'>4930506C21Rik</a>
-Mir142	0.410046157034538	10.2906694825108	1.4218785186046	0.17672385111129	0.299171979403534	-6.41435699163406	19662	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir142'>Mir142</a>
-Snora21	0.959353356143857	0.507946560272087	1.41623429110422	0.178338802850048	0.301115991489993	-5.28552716691184	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora21'>Snora21</a>
-Snord65	-1.23356235450304	4.06885013060286	-1.41596621878151	0.178415806740733	0.301115991489993	-5.85809835998808	320	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord65'>Snord65</a>
-Mir501	0.955024236284725	4.54147542300529	1.41510313454645	0.178663914319654	0.301115991489993	-5.93664817702189	395	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir501'>Mir501</a>
-2410006H16Rik	0.361629145305105	7.57050758085267	1.41328401324661	0.179187781889619	0.301553479551704	-6.23986339628376	2927	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2410006H16Rik'>2410006H16Rik</a>
-4930455H04Rik	1.13172981083616	-0.682253494693378	1.40835127249367	0.180614676369773	0.303507136580134	-5.29864005434158	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930455H04Rik'>4930455H04Rik</a>
-D330041H03Rik	1.39156614960393	-0.558690449548107	1.40593276317899	0.181317688516695	0.304240415584632	-5.30345383247936	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D330041H03Rik'>D330041H03Rik</a>
-Icmt	1.20612960113274	-0.684171990235058	1.40322513481035	0.18210741065202	0.305116821665132	-5.30510284062866	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Icmt'>Icmt</a>
-2900076A07Rik	0.423795449217499	6.67156273621472	1.3964570180697	0.184093807847588	0.307992719580788	-6.19163088513208	1663	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2900076A07Rik'>2900076A07Rik</a>
-Luc7l	1.4356244163844	0.36209982723262	1.39261137548867	0.185230378351142	0.309440500290854	-5.32601427080344	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Luc7l'>Luc7l</a>
-Pnpla2	1.02936952347131	0.947589949833786	1.38809066529025	0.186573812314756	0.31122912258938	-5.36176823700877	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pnpla2'>Pnpla2</a>
-Rnu11	1.07261723735483	3.54085705017394	1.37958006862461	0.1891245750451	0.315023562228408	-5.8124177161749	297	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rnu11'>Rnu11</a>
-Scarna3a	0.358634347087909	6.84417523287242	1.37423633297104	0.190740692166723	0.317252375746693	-6.23449885762334	1742	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna3a'>Scarna3a</a>
-Mir879	-0.865443524827827	0.513582546463155	-1.37321027685045	0.191052290488549	0.31730809817676	-5.32105187421976	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir879'>Mir879</a>
-4930417O13Rik	1.18361492567874	-0.461823769002454	1.37210884759797	0.191387240468858	0.317402385719429	-5.34431284007925	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930417O13Rik'>4930417O13Rik</a>
-Mir1843b	0.356514470405414	6.84310339090516	1.36899584712098	0.192336508638543	0.318513724755555	-6.24116798547559	1740	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1843b'>Mir1843b</a>
-4930592A05Rik	1.03052531511564	-1.13917247326995	1.36610709134638	0.193220824547368	0.319052041691096	-5.36399273876038	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930592A05Rik'>4930592A05Rik</a>
-Gm20300	1.03052531511564	-1.13917247326995	1.36610709134638	0.193220824547368	0.319052041691096	-5.36399273876038	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm20300'>Gm20300</a>
-Psmd2	1.47834506664869	0.852672302453096	1.36471212861521	0.193649039068748	0.319087273512383	-5.39396285673084	58	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Psmd2'>Psmd2</a>
-Mir339	0.40343749694094	5.26814352346546	1.36421616220313	0.193801472869484	0.319087273512383	-6.10182981490915	599	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir339'>Mir339</a>
-2810055G20Rik	-0.97189420184314	0.494067646223494	-1.36078572848097	0.194858481133459	0.320365312641608	-5.33994058231233	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2810055G20Rik'>2810055G20Rik</a>
-Mir196b	-1.13510810552843	-0.405891396881051	-1.35478140249157	0.196719850556781	0.322960215086743	-5.34712927474264	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir196b'>Mir196b</a>
-Gm6981	1.0403319439215	-0.727574754616467	1.3501513241177	0.198165030794737	0.324865373759763	-5.3710798023265	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm6981'>Gm6981</a>
-Mir296	-1.05016591608505	-0.376655389359266	-1.3390650655849	0.201660348607318	0.330121173258177	-5.36030020128242	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir296'>Mir296</a>
-Snord64	-0.5066981906967	3.71324562206005	-1.33655464337627	0.202458725817311	0.330953303950647	-5.91647756097912	197	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord64'>Snord64</a>
-Snord35b	1.09275289003475	-0.00490479042588459	1.32292989560528	0.206836338140382	0.337625553387949	-5.39467067778802	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord35b'>Snord35b</a>
-2810454H06Rik	-1.03206410146289	0.244172768278416	-1.32151347019798	0.207295773208692	0.337892110330168	-5.37505541531076	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2810454H06Rik'>2810454H06Rik</a>
-Gm10532	0.930350784049422	-1.18449373319304	1.30182675888512	0.213766681711239	0.347446985516415	-5.4461738806082	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10532'>Gm10532</a>
-Gm16907	0.930350784049422	-1.18449373319304	1.30182675888512	0.213766681711239	0.347446985516415	-5.4461738806082	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16907'>Gm16907</a>
-Snord82	0.521973959385618	3.65015969513716	1.2980839555761	0.215015018125258	0.34897885587613	-5.94664789550243	191	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord82'>Snord82</a>
-Snhg5	-0.967225523765167	0.0824699275700137	-1.29541157390313	0.2159098951753	0.349918908831395	-5.40370928399367	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg5'>Snhg5</a>
-Mir363	1.15445492135561	-0.478497195912167	1.29452460128447	0.216207564177154	0.349918908831395	-5.43848438880553	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir363'>Mir363</a>
-Gm19710	0.93508992538424	-1.18449373319304	1.28764646778302	0.218526999893145	0.352672286956263	-5.46306405992466	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm19710'>Gm19710</a>
-Slc35c2	0.93508992538424	-1.18449373319304	1.28764646778302	0.218526999893145	0.352672286956263	-5.46306405992466	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Slc35c2'>Slc35c2</a>
-Snord57	0.262437228600292	9.4077044747777	1.2842500554542	0.219679620562366	0.35403170488935	-6.53234377843161	10268	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord57'>Snord57</a>
-Scarna9	0.753642588298107	2.12767296655412	1.27094440177951	0.224241711620433	0.36087417906758	-5.69229097174786	67	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna9'>Scarna9</a>
-9330178D15Rik	-1.05713219200343	-1.07849411987367	-1.27002691260158	0.224559037706864	0.360875862004974	-5.49789518736927	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330178D15Rik'>9330178D15Rik</a>
-Mir130b	-0.530010375624871	3.21349184345499	-1.26785063937428	0.225313153729231	0.36157849283411	-5.9082089021571	135	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir130b'>Mir130b</a>
-Sh2d3c	-0.946567512897814	0.0824699275700137	-1.25923701193745	0.228317603257779	0.365885372636413	-5.44614755916012	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sh2d3c'>Sh2d3c</a>
-Snord49a	0.381301583110176	6.11567405056436	1.25241371523562	0.230719961977962	0.369216657246641	-6.32557176857517	1114	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord49a'>Snord49a</a>
-Dtnb	1.34663394444782	-0.393930978374138	1.24318551402563	0.234000665323399	0.373942239683471	-5.50079398296816	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dtnb'>Dtnb</a>
-4933404O12Rik	0.960987626070486	-1.18449373319304	1.2390904903603	0.235468171833537	0.375761096590301	-5.51979500865598	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933404O12Rik'>4933404O12Rik</a>
-9330133O14Rik	0.902410788307409	-1.19510484539135	1.23568661810827	0.236693481520096	0.377188913986634	-5.52481098009737	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330133O14Rik'>9330133O14Rik</a>
-Mir1970	0.981623687672708	-1.16497883295338	1.23358760674581	0.237451560697612	0.377869220022281	-5.52422742180909	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1970'>Mir1970</a>
-4933433G15Rik	-0.845091810799975	-1.13917247326995	-1.21970156103377	0.242514607267494	0.384823868748979	-5.56216873762972	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933433G15Rik'>4933433G15Rik</a>
-Mir487b	-0.845091810799975	-1.13917247326995	-1.21970156103377	0.242514607267494	0.384823868748979	-5.56216873762972	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir487b'>Mir487b</a>
-4930413G21Rik	0.989353987464206	-0.386376496641391	1.21883417397784	0.242833641980074	0.384823868748979	-5.51908435781945	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930413G21Rik'>4930413G21Rik</a>
-Snord83b	0.418249712013688	3.86840948135021	1.21625843057086	0.24378295710375	0.385792446678751	-6.08239291387437	221	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord83b'>Snord83b</a>
-Mir744	0.375928995244175	7.06487761533261	1.21046077244345	0.245930308976254	0.388148264070044	-6.45312420350352	2175	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir744'>Mir744</a>
-Gm11602	1.0569663896266	1.47452012926735	1.21040249722871	0.245951967504506	0.388148264070044	-5.64187054631556	61	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm11602'>Gm11602</a>
-Clk1	1.34983134183554	0.892119610003834	1.20797593928329	0.246855136854761	0.388972207417494	-5.58134407870492	54	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Clk1'>Clk1</a>
-Rn45s	0.683447675537728	14.2197149824842	1.20716947910787	0.247155872373079	0.388972207417494	-6.94183060696878	360404	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rn45s'>Rn45s</a>
-Orc6	0.828069658072878	-0.835052547360434	1.19938377098925	0.250073865655696	0.393012592445325	-5.54966196863703	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Orc6'>Orc6</a>
-Gm10336	-0.862983197557129	-1.13917247326995	-1.19601713252826	0.251343875564565	0.393012592445325	-5.58891156888004	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10336'>Gm10336</a>
-Gm16897	-0.862983197557129	-1.13917247326995	-1.19601713252826	0.251343875564565	0.393012592445325	-5.58891156888004	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16897'>Gm16897</a>
-Abhd11	0.914456828775136	-0.664690062867476	1.19552627276665	0.251529460444447	0.393012592445325	-5.550699097181	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Abhd11'>Abhd11</a>
-D030028A08Rik	0.921530541409756	-1.19510484539135	1.19301988845778	0.25247872941492	0.393012592445325	-5.57311877933865	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D030028A08Rik'>D030028A08Rik</a>
-Dennd2d	0.921530541409756	-1.19510484539135	1.19301988845778	0.25247872941492	0.393012592445325	-5.57311877933865	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dennd2d'>Dennd2d</a>
-Gm14403	0.921530541409756	-1.19510484539135	1.19301988845778	0.25247872941492	0.393012592445325	-5.57311877933865	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm14403'>Gm14403</a>
-Gm3219	0.921530541409756	-1.19510484539135	1.19301988845778	0.25247872941492	0.393012592445325	-5.57311877933865	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm3219'>Gm3219</a>
-Wbscr25	-0.93987296072539	-1.13917247326995	-1.18824159745951	0.254296125357236	0.395302287510363	-5.59759867475912	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wbscr25'>Wbscr25</a>
-Gabpb1	0.916773949402714	-0.788253108012747	1.18369591465584	0.256034399575008	0.397462925054535	-5.56549504794546	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gabpb1'>Gabpb1</a>
-Mir211	0.825074748111626	-0.880373807283523	1.17378618405685	0.259855584968479	0.40284676963184	-5.57990075138058	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir211'>Mir211</a>
-Nt5c2	1.05516837907923	0.326231814341724	1.17272736320358	0.260266441095664	0.402936240556516	-5.56509032003189	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nt5c2'>Nt5c2</a>
-1500015L24Rik	0.808616217238156	-1.24517208658932	1.16726413306531	0.262394269069057	0.404583595956478	-5.60687790222948	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1500015L24Rik'>1500015L24Rik</a>
-Cyp2d37-ps	0.808616217238156	-1.24517208658932	1.16726413306531	0.262394269069057	0.404583595956478	-5.60687790222948	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cyp2d37-ps'>Cyp2d37-ps</a>
-Trpt1	0.808616217238156	-1.24517208658932	1.16726413306531	0.262394269069057	0.404583595956478	-5.60687790222948	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Trpt1'>Trpt1</a>
-BC029722	0.823443920149512	-1.23129317254072	1.16607728334613	0.262858281841981	0.404752091203375	-5.60671637501778	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BC029722'>BC029722</a>
-1810062O18Rik	0.922758966567288	-0.788253108012747	1.16111625399114	0.264804653612883	0.407199608857547	-5.5903045818008	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810062O18Rik'>1810062O18Rik</a>
-Snord89	0.738345291933225	1.20312081396993	1.15974138941317	0.265346001348298	0.407482890361249	-5.65593005904902	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord89'>Snord89</a>
-Polg2	0.884660693310263	-1.24517208658932	1.1577939018345	0.266114262880999	0.407565602613717	-5.61723207863543	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Polg2'>Polg2</a>
-Sgsm1	0.884660693310263	-1.24517208658932	1.1577939018345	0.266114262880999	0.407565602613717	-5.61723207863543	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sgsm1'>Sgsm1</a>
-Mir3058	-0.978203405704609	-0.498012096151827	-1.14953116886071	0.269392696348615	0.411904246746464	-5.58396014066336	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3058'>Mir3058</a>
-Mirlet7c-2	-0.313141269327901	5.8169620327074	-1.14883798280248	0.269669125608772	0.411904246746464	-6.42193298909956	861	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7c-2'>Mirlet7c-2</a>
-Mir376b	-0.99103045209925	1.03829066633399	-1.14279150067575	0.272089498256322	0.414737087115015	-5.63858333409662	42	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir376b'>Mir376b</a>
-Mir30a	-0.151237258601805	15.2301476884988	-1.14239018110005	0.272250725897586	0.414737087115015	-7.0852176231084	565907	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir30a'>Mir30a</a>
-Zfp414	0.85018887029495	-1.23129317254072	1.14035831952976	0.273068126226575	0.415093483425908	-5.63464742242361	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp414'>Zfp414</a>
-2610001J05Rik	-0.86697193885018	-0.544811535499514	-1.14000047811695	0.273212275243521	0.415093483425908	-5.59553124660726	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610001J05Rik'>2610001J05Rik</a>
-Gm5089	1.19134922509429	0.268662794525323	1.1381213178655	0.273970202991538	0.415691491507108	-5.60872857801353	34	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5089'>Gm5089</a>
-Ankzf1	1.12914177457743	-0.218382196489221	1.13664393067542	0.274567199850722	0.416044057144321	-5.60992873862588	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ankzf1'>Ankzf1</a>
-Rpl22	1.09218207381924	0.761804412553155	1.13340898087306	0.275877847845008	0.417475629165987	-5.63984950101587	40	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rpl22'>Rpl22</a>
-Gm9999	0.881407773684291	-1.23129317254072	1.13199470748295	0.276452328431551	0.417576407133251	-5.64361970581462	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm9999'>Gm9999</a>
-Mir1965	-0.872346376244262	-0.941052160679803	-1.1314437021438	0.276676392456387	0.417576407133251	-5.64344814416069	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1965'>Mir1965</a>
-1700113A16Rik	0.751208638851327	-0.101771470971538	1.12825054116647	0.277977580239225	0.418986022527021	-5.60264200827995	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700113A16Rik'>1700113A16Rik</a>
-Parp6	1.01660160898912	0.172934248903557	1.10488791379887	0.287638347248928	0.432975401333808	-5.63192280524991	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Parp6'>Parp6</a>
-Gm10649	-0.892846942526544	-0.742931848089659	-1.09635581501043	0.291228443757408	0.437316695864095	-5.65951959369185	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10649'>Gm10649</a>
-Mir5128	0.980265466022246	-0.0477575943918147	1.0962126985773	0.291288947288968	0.437316695864095	-5.64043620544502	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5128'>Mir5128</a>
-AA465934	-0.998174655804847	-0.455382481422444	-1.09422848561995	0.292128753507906	0.438001192841683	-5.6384531760545	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AA465934'>AA465934</a>
-Mirg	-0.474362072277141	6.82767679984071	-1.08788511862449	0.294825638847012	0.44112747945308	-6.57223781945416	1940	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirg'>Mirg</a>
-Krit1	-0.738246664477569	-0.835052547360435	-1.08750674463041	0.294987087487029	0.44112747945308	-5.67818166859644	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Krit1'>Krit1</a>
-Zfp326	0.916204728436975	0.141670101541695	1.08461400360127	0.296223563256996	0.441769310816773	-5.64946191365176	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp326'>Zfp326</a>
-9430060I03Rik	0.893039869828009	-0.484133182103234	1.08424508768217	0.296381529077199	0.441769310816773	-5.66824954289941	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9430060I03Rik'>9430060I03Rik</a>
-Mphosph9	0.825946492812557	-0.835052547360434	1.08364147818961	0.296640122891534	0.441769310816773	-5.67407248575821	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mphosph9'>Mphosph9</a>
-Mir465	0.753847528822331	-1.27661443246381	1.08288371043005	0.296964996841775	0.441769310816773	-5.70008050633046	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir465'>Mir465</a>
-Mir7-1	-0.462285314925654	2.79727444411883	-1.07768367150356	0.299201499765338	0.444023980943917	-6.04570260584071	96	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir7-1'>Mir7-1</a>
-4930502E09Rik	0.820061649339301	-1.27661443246381	1.07755051682844	0.299258931942044	0.444023980943917	-5.70556790028921	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930502E09Rik'>4930502E09Rik</a>
-Tug1	0.943551372770822	1.74501709615624	1.07570169377573	0.300057207710029	0.444071701003612	-5.82821799993449	78	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tug1'>Tug1</a>
-4930414N06Rik	0.732304356782422	-1.27661443246381	1.07567328957759	0.300069484201389	0.444071701003612	-5.70749397255429	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930414N06Rik'>4930414N06Rik</a>
-Pvt1	0.777499165180762	-0.452690836228738	1.07397292650801	0.300805069325891	0.444583658161712	-5.67426367019689	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pvt1'>Pvt1</a>
-Mir880	0.798518477299392	-1.27661443246381	1.06858448026948	0.303144932062895	0.446380139558595	-5.7147416680859	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir880'>Mir880</a>
-9330151L19Rik	0.797000406484024	-1.27661443246381	1.06847129963835	0.303194222750142	0.446380139558595	-5.71485705720905	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330151L19Rik'>9330151L19Rik</a>
-Lins	0.797000406484024	-1.27661443246381	1.06847129963835	0.303194222750142	0.446380139558595	-5.71485705720905	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Lins'>Lins</a>
-A730020M07Rik	0.759617567138328	-1.27661443246381	1.06479234302223	0.304799642362463	0.447013357243663	-5.7186021728347	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A730020M07Rik'>A730020M07Rik</a>
-F630206G17Rik	0.759617567138328	-1.27661443246381	1.06479234302223	0.304799642362463	0.447013357243663	-5.7186021728347	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/F630206G17Rik'>F630206G17Rik</a>
-Gm21944	0.759617567138328	-1.27661443246381	1.06479234302223	0.304799642362463	0.447013357243663	-5.7186021728347	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm21944'>Gm21944</a>
-Snord8	0.659763836479369	1.10794348423359	1.06250387902545	0.305801430794694	0.447906845361676	-5.74488769750243	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord8'>Snord8</a>
-Afg3l1	0.944955196582147	0.447268206875807	1.06058601378491	0.306642849914595	0.448563450964811	-5.68339660157891	27	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Afg3l1'>Afg3l1</a>
-Vps39	0.961960880735596	-0.76568157730752	1.05915803437452	0.307270446487918	0.448905991603988	-5.69739803344418	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Vps39'>Vps39</a>
-Mrpl48	0.838840541796115	-0.239213430165402	1.05463054356545	0.309266509401883	0.451244357068476	-5.68718625388737	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mrpl48'>Mrpl48</a>
-Wls	-0.798306174379161	-0.590132795422603	-1.04838398068904	0.312036040279375	0.454149609721631	-5.69285981724256	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wls'>Wls</a>
-Mir101c	0.678674341657184	-0.941052160679803	1.04834423627082	0.312053719563329	0.454149609721631	-5.71644979537614	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir101c'>Mir101c</a>
-4930565N06Rik	-0.760881657711942	-0.452690836228738	-1.04536813721085	0.313379640481894	0.455414522982691	-5.68467326756101	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930565N06Rik'>4930565N06Rik</a>
-Gm19782	-0.824138055093141	-1.04705177399917	-1.04419216716558	0.313904694022045	0.455414522982691	-5.74437221530442	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm19782'>Gm19782</a>
-E130317F20Rik	0.769245257418443	-0.498012096151827	1.04291674364268	0.3144748770515	0.455414522982691	-5.7049158335577	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E130317F20Rik'>E130317F20Rik</a>
-Mir672	-0.747248291924879	-1.04705177399917	-1.04198352749126	0.314892552981749	0.455414522982691	-5.74657924729597	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir672'>Mir672</a>
-Mir20a	-0.370723568916546	5.31004708857036	-1.04192548554098	0.314918543938074	0.455414522982691	-6.48442003496676	643	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir20a'>Mir20a</a>
-0610043K17Rik	0.984989107300095	0.566661427402775	1.03734276139365	0.316975604930417	0.457287012691463	-5.71838241477771	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/0610043K17Rik'>0610043K17Rik</a>
-2610307P16Rik	-0.91429583632135	-0.954931074728396	-1.03725537976782	0.317014922908806	0.457287012691463	-5.74201320442599	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610307P16Rik'>2610307P16Rik</a>
-B630019K06Rik	0.719990612273558	-0.756810762138252	1.03218755693734	0.319301294119003	0.46000350579518	-5.72479023365126	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B630019K06Rik'>B630019K06Rik</a>
-Gm14872	0.835812662260224	-0.835052547360434	1.03077941192774	0.319938704270154	0.460340556837637	-5.72736949007166	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm14872'>Gm14872</a>
-Cops5	0.955225694844395	-0.407547774818283	1.02575302603018	0.322221466881596	0.463041175959573	-5.72322668671274	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cops5'>Cops5</a>
-Gm19461	0.915494510219759	-0.788253108012747	1.02058918961822	0.324578899608511	0.465842169123662	-5.73572336698256	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm19461'>Gm19461</a>
-Mir702	-0.826707259520221	-0.299891783561682	-1.01839078954777	0.325586298913891	0.465882836241176	-5.70404861077289	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir702'>Mir702</a>
-E130307A14Rik	-0.788814584438982	-0.590132795422603	-1.01803072764692	0.325751509050542	0.465882836241176	-5.72282760292051	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E130307A14Rik'>E130307A14Rik</a>
-Mir677	-0.46535805282509	2.7048223776038	-1.01785498662811	0.325832167677878	0.465882836241176	-6.08983176917819	94	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir677'>Mir677</a>
-2900008C10Rik	-0.828374176793865	-0.558690449548107	-1.01087466362321	0.329047523081663	0.469891394037769	-5.72790706263801	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2900008C10Rik'>2900008C10Rik</a>
-Scarna10	0.743056669215782	0.528777793948269	1.00234095871278	0.333009304922059	0.474954521145087	-5.74101823672795	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna10'>Scarna10</a>
-Snord7	-0.835470371413723	-0.676617508502311	-1.00141282716469	0.333442241670381	0.474978274339456	-5.74740702860384	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord7'>Snord7</a>
-Oaz1-ps	0.674104425949451	1.49609964982675	0.999155033797244	0.334497093796054	0.475886763118825	-5.86801256135581	41	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Oaz1-ps'>Oaz1-ps</a>
-Kcnq1ot1	0.910278085334024	-0.218382196489221	0.997758138243239	0.335150923261523	0.476223167423908	-5.74375068180754	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Kcnq1ot1'>Kcnq1ot1</a>
-4921513I03Rik	-0.898652409766853	-0.954931074728396	-0.996357559472656	0.335807392489445	0.476352069705573	-5.7819683962692	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4921513I03Rik'>4921513I03Rik</a>
-Snord111	0.487167361404432	2.40322325564047	0.995476712980872	0.336220726321058	0.476352069705573	-6.04721452535901	82	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord111'>Snord111</a>
-Mir326	-0.382358415670825	3.27011368251419	-0.994342337417545	0.336753562180123	0.476352069705573	-6.21830968460093	144	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir326'>Mir326</a>
-A330035P11Rik	0.965364268939122	-0.768738207773087	0.993167927399008	0.337305836954342	0.476352069705573	-5.76224148604484	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A330035P11Rik'>A330035P11Rik</a>
-Wiz	0.750657520168244	0.574260899859435	0.993118546042969	0.337329073025507	0.476352069705573	-5.7530631806465	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Wiz'>Wiz</a>
-4930573O16Rik	0.724242940462577	-0.880373807283523	0.988574355151803	0.33947219472701	0.478785876617451	-5.77014512800664	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930573O16Rik'>4930573O16Rik</a>
-C030016D13Rik	0.736627595056793	-0.880373807283523	0.98365906844454	0.341801211615667	0.48147553389318	-5.7748146431183	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C030016D13Rik'>C030016D13Rik</a>
-Mir106b	-0.272040824179646	6.30534021503053	-0.978912859532382	0.344060849311784	0.483787015120022	-6.6415010931846	1230	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir106b'>Mir106b</a>
-Mir93	0.231991919214371	8.92958242253252	0.978432473677121	0.344290145729586	0.483787015120022	-6.83817344932306	7480	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir93'>Mir93</a>
-A130049A11Rik	0.749480333675935	-0.90486383353043	0.973825967230468	0.346494399579791	0.485688095725481	-5.78593949448688	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A130049A11Rik'>A130049A11Rik</a>
-Ppp4r1l-ps	0.749480333675935	-0.90486383353043	0.973825967230468	0.346494399579791	0.485688095725481	-5.78593949448688	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ppp4r1l-ps'>Ppp4r1l-ps</a>
-Snora44	0.286033309288083	5.62130667581717	0.971157099851877	0.3477760255746	0.48688643580444	-6.58548506620032	724	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora44'>Snora44</a>
-Kat5	0.866499552085197	-0.402623595030772	0.964975242015777	0.35075746085532	0.490458655436177	-5.78144072211864	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Kat5'>Kat5</a>
-Osbpl1a	1.09737003164025	0.516465901027703	0.963410623524111	0.351514898897857	0.490916156233114	-5.78884397041858	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Osbpl1a'>Osbpl1a</a>
-Mir1982	0.739352688973082	0.294469154208751	0.962125981745475	0.35213765737009	0.491184678556568	-5.76656609837178	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1982'>Mir1982</a>
-Asb7	0.703526575105393	-0.925695067206612	0.958123449514082	0.354082936025685	0.492563942310599	-5.80224617247519	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Asb7'>Asb7</a>
-Hdac10	0.974865932277475	-1.17447243960754	0.957964659851365	0.354160264679881	0.492563942310599	-5.81150986834852	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Hdac10'>Hdac10</a>
-Brat1	0.726590679354257	-0.880373807283523	0.957428291454004	0.354421557087644	0.492563942310599	-5.79939146334398	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Brat1'>Brat1</a>
-Mir491	-0.684898615634921	-0.835052547360435	-0.953861551192324	0.35616253103266	0.494381323489374	-5.80900377777519	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir491'>Mir491</a>
-Pum2	0.976211707535353	0.893848485511468	0.941843079399731	0.362072854082899	0.501974637312986	-5.83976051882873	52	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pum2'>Pum2</a>
-Flcn	0.819178463384112	0.21104107159461	0.936286718836365	0.364828219319466	0.505180823111056	-5.78834781376735	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Flcn'>Flcn</a>
-2310010J17Rik	-0.781496807473563	-0.752064780863374	-0.934867786030351	0.365534182055843	0.505544850576626	-5.81765744708763	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310010J17Rik'>2310010J17Rik</a>
-Yipf2	0.803138506076097	-0.880373807283523	0.933170155190723	0.366380047226091	0.506101251676719	-5.82160275803741	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Yipf2'>Yipf2</a>
-Pex11b	0.745690782417397	-0.742931848089659	0.932131479018354	0.366898247195751	0.506204232225335	-5.81894124952379	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pex11b'>Pex11b</a>
-Mir301b	-0.741931823310326	0.0963488416186067	-0.928572452406972	0.368677700638315	0.507450144605635	-5.78347200652652	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir301b'>Mir301b</a>
-Mir3066	-0.837579077861343	-0.558690449548107	-0.927767726846745	0.369080873917973	0.507450144605635	-5.80554388805339	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3066'>Mir3066</a>
-1110054M08Rik	0.762586926696282	-0.108062930415306	0.927658715560211	0.369135512728026	0.507450144605635	-5.79933690871854	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1110054M08Rik'>1110054M08Rik</a>
-2810008D09Rik	0.62387744108405	2.75194116634391	0.919384284757436	0.373299112497706	0.512041876787549	-6.18722980685037	137	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2810008D09Rik'>2810008D09Rik</a>
-Gm5512	0.771365549912191	-0.452690836228738	0.919237589387622	0.373373217780228	0.512041876787549	-5.82241315825623	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5512'>Gm5512</a>
-Rbbp8	0.886305125756175	-0.0477575943918147	0.917555243290929	0.374223801048332	0.512592265301497	-5.81282466752688	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rbbp8'>Rbbp8</a>
-Gm11974	0.778082873591224	-0.447944854953861	0.909892000761802	0.37811508552564	0.517301334034479	-5.83079148689953	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm11974'>Gm11974</a>
-Mir369	-0.74269677210509	0.589456147344549	-0.905344093956725	0.380437470711399	0.519596997836352	-5.82156063054654	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir369'>Mir369</a>
-Mir26a-2	0.485967334173185	2.96081541822386	0.904823661302764	0.380703847669755	0.519596997836352	-6.23863459210439	131	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir26a-2'>Mir26a-2</a>
-Minos1	0.704827095217255	0.326231814341724	0.900400917247283	0.382972698552506	0.522069114753178	-5.81919593446542	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Minos1'>Minos1</a>
-Deaf1	0.779036313891313	-0.299891783561682	0.896459320434846	0.385002448889921	0.524209778261814	-5.83491078724319	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Deaf1'>Deaf1</a>
-Gm19466	-0.749840672361975	-1.04705177399917	-0.887587437647754	0.389597708777317	0.529834309552942	-5.89076869788414	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm19466'>Gm19466</a>
-Gm2518	0.63646451042641	-0.558690449548107	0.883457449799982	0.391749438497377	0.532126320625604	-5.85297878336349	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm2518'>Gm2518</a>
-Mir505	0.574628179268003	0.386589853479527	0.877080062325064	0.395087742631044	0.535616337424576	-5.8408806452811	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir505'>Mir505</a>
-Gm13483	-0.650881842270608	-1.13917247326995	-0.876756483145742	0.395257630246707	0.535616337424576	-5.90961874985058	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm13483'>Gm13483</a>
-A930016O22Rik	-0.909159760956733	-0.165684653346019	-0.874712631220314	0.39633183750076	0.535965610314034	-5.83382312143566	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A930016O22Rik'>A930016O22Rik</a>
-4930526L06Rik	-0.646483610508766	-1.13917247326995	-0.874478831554822	0.39645484233571	0.535965610314034	-5.91157337325639	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930526L06Rik'>4930526L06Rik</a>
-1500011K16Rik	0.687958770706193	-0.941052160679803	0.866684426419982	0.400570191138535	0.540789721466861	-5.88463986982684	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1500011K16Rik'>1500011K16Rik</a>
-Adamts10	0.766269359657236	-0.742931848089659	0.865927841035999	0.400971169466226	0.540789721466861	-5.87691249385262	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Adamts10'>Adamts10</a>
-Mir206	-0.641735198874169	-1.04705177399917	-0.859684053228752	0.404290476936943	0.544080673710294	-5.91464885848361	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir206'>Mir206</a>
-Mirlet7a-1	0.288440707007994	4.74252865689731	0.859544351286645	0.404364952941568	0.544080673710294	-6.58293245452761	419	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7a-1'>Mirlet7a-1</a>
-Mir382	-0.527248187537959	0.0495494022709194	-0.854532688517629	0.407042720034116	0.547038567207216	-5.84404452207965	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir382'>Mir382</a>
-Snord73a	0.572583034995795	1.81609219396321	0.851752202751694	0.408533400862583	0.548396012216715	-6.06031448455445	64	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord73a'>Snord73a</a>
-AI450353	-0.739501717206301	-0.628239618113655	-0.84525729275282	0.412029489929552	0.551965918621367	-5.88226286676174	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AI450353'>AI450353</a>
-Rnf126	0.61640700457571	-0.941052160679803	0.844020033078334	0.412697708943189	0.551965918621367	-5.90363669815116	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rnf126'>Rnf126</a>
-4930452A19Rik	-0.567623714118899	-1.13917247326995	-0.842981854548559	0.41325895737657	0.551965918621367	-5.93813552591444	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930452A19Rik'>4930452A19Rik</a>
-Mir20b	-0.567623714118899	-1.13917247326995	-0.842981854548559	0.41325895737657	0.551965918621367	-5.93813552591444	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir20b'>Mir20b</a>
-Gm20757	-0.731130631705067	-1.04705177399917	-0.842329981431555	0.41361162175396	0.551965918621367	-5.92915547644012	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm20757'>Gm20757</a>
-4931431C16Rik	-0.591970897908513	-0.484133182103234	-0.841074383427949	0.414291458744729	0.552203761888197	-5.87182267817147	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4931431C16Rik'>4931431C16Rik</a>
-Mir541	-0.389131733074012	6.47782397759286	-0.840213916014968	0.414757777334079	0.552203761888197	-6.78224992188811	1553	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir541'>Mir541</a>
-Klc2	0.629802083792426	-0.941052160679803	0.838734263576251	0.415560458996938	0.552479168421516	-5.9080019839148	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Klc2'>Klc2</a>
-Snapc4	0.677537959473713	-0.941052160679803	0.838048077598245	0.41593304616484	0.552479168421516	-5.90856686178304	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snapc4'>Snapc4</a>
-2210408F21Rik	0.673125158878238	3.63276510319773	0.835452055835978	0.417344619062095	0.553709546918431	-6.41859057863293	234	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2210408F21Rik'>2210408F21Rik</a>
-Gm10865	0.652530700740246	-0.558690449548107	0.834529610770428	0.417846946728652	0.553732132656668	-5.8940864123663	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10865'>Gm10865</a>
-Lmf1	-0.698964865722747	-0.133213816846033	-0.831214508127132	0.419655480523413	0.555440326826189	-5.86465518441044	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Lmf1'>Lmf1</a>
-B230208H11Rik	-0.324105163507426	4.07425728624104	-0.830383638654244	0.42010955482121	0.555440326826189	-6.51194043474033	250	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B230208H11Rik'>B230208H11Rik</a>
-Zfp207	0.813007063755825	-0.0836318824890616	0.828134659773233	0.421340237870797	0.556422698391875	-5.88719575711569	19	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp207'>Zfp207</a>
-Mir1945	0.597491165734377	-0.941052160679803	0.826047545337222	0.422484441705835	0.557288725995789	-5.91837835814761	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1945'>Mir1945</a>
-Snora41	0.348564473053555	4.54185649419262	0.819592789265972	0.426035844548422	0.560279811338197	-6.58753509611365	394	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora41'>Snora41</a>
-Oxsr1	0.724767749665156	0.244978069667359	0.819331396413772	0.426180068646681	0.560279811338197	-5.88476749078111	24	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Oxsr1'>Oxsr1</a>
-D630024D03Rik	0.728476694326676	-1.31472125515486	0.818971143090679	0.426378890981613	0.560279811338197	-5.94729714256845	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D630024D03Rik'>D630024D03Rik</a>
-4933400L20Rik	0.515324865407562	-1.03317285995058	0.818083247017312	0.426869173233144	0.560279811338197	-5.9337772796173	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4933400L20Rik'>4933400L20Rik</a>
-Xist	0.723357937638788	-1.31472125515486	0.816666748076131	0.427652095638525	0.560279811338197	-5.94915534796961	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Xist'>Xist</a>
-Dlg1	0.603909137429248	1.27329048309733	0.815752808761627	0.428157736836546	0.560279811338197	-5.99440605481118	45	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dlg1'>Dlg1</a>
-March2	0.877263658846623	0.62903919856468	0.815695775265458	0.428189303669507	0.560279811338197	-5.91500249911908	36	<a href='http://www.genecards.org/index.php?path=/Search/keyword/March2'>March2</a>
-C230037L18Rik	0.602090880767705	-0.941052160679803	0.813307514125875	0.429512503460807	0.561367430067332	-5.92865426872929	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C230037L18Rik'>C230037L18Rik</a>
-Gm13375	0.630370755592059	-0.941052160679803	0.811990507037629	0.430243308062424	0.561679192790876	-5.9297082862367	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm13375'>Gm13375</a>
-Gt(ROSA)26Sor	-0.733479640637234	0.703375227668527	-0.811102967738619	0.430736253048963	0.561680073975848	-5.91552151445348	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gt(ROSA)26Sor'>Gt(ROSA)26Sor</a>
-Mir16-1	0.23749541505541	5.06012981661098	0.809632974888138	0.431553495333911	0.562103354082183	-6.66710805508667	499	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir16-1'>Mir16-1</a>
-4930523C07Rik	0.594215392165458	-0.544811535499514	0.807761652304698	0.432595297587676	0.562150931706581	-5.915729457308	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930523C07Rik'>4930523C07Rik</a>
-Mir374	0.289766495627774	4.44733832008286	0.806913394226144	0.433068070964141	0.562150931706581	-6.58616786299793	323	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir374'>Mir374</a>
-Mir374c	0.289766495627774	4.44733832008286	0.806913394226144	0.433068070964141	0.562150931706581	-6.58616786299793	323	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir374c'>Mir374c</a>
-Mir32	0.284410784956249	4.15923774757354	0.802255193307119	0.435670204852205	0.564332305440744	-6.54373122401893	274	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir32'>Mir32</a>
-4930481A15Rik	0.749607671194882	-0.676617508502311	0.802134533319532	0.435737739783782	0.564332305440744	-5.92746695739246	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930481A15Rik'>4930481A15Rik</a>
-Mir409	-0.359607138432163	2.88484526509054	-0.797779273016708	0.438179914112214	0.566851793653103	-6.32177877712439	114	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir409'>Mir409</a>
-Cdh23	0.599378997186575	-0.00965077170076204	0.794288413364285	0.440143672025998	0.568747372346165	-5.90268758787859	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cdh23'>Cdh23</a>
-Mir187	-0.410978066923546	2.47994750376	-0.791106453483068	0.441938529712543	0.570420658825805	-6.25179118381728	82	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir187'>Mir187</a>
-1700012D01Rik	0.583673007317414	-0.544811535499514	0.784412244834506	0.445729690119356	0.574663928165181	-5.93404385599654	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700012D01Rik'>1700012D01Rik</a>
-Tubgcp4	0.664451553261744	-0.360570136957963	0.781428132053519	0.447426298647817	0.576200233360225	-5.92858125197625	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tubgcp4'>Tubgcp4</a>
-D930016D06Rik	0.626414726591185	-0.925695067206612	0.770815021447429	0.453493261191949	0.58335491659528	-5.9606398937825	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D930016D06Rik'>D930016D06Rik</a>
-Cep57	0.681384751801818	-0.90486383353043	0.766753154462571	0.455828781677903	0.585698918800099	-5.96205602441123	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cep57'>Cep57</a>
-A930006I01Rik	-0.665296203586878	-0.0564502110484493	-0.764249316031887	0.457272188017012	0.586892650761991	-5.91664059502587	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A930006I01Rik'>A930006I01Rik</a>
-Spns1	0.563832082258649	-0.600743907620917	0.76139003304349	0.458923976722084	0.588350851056065	-5.9518091247888	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Spns1'>Spns1</a>
-Fut8	-0.594335457577261	-0.0202618838990762	-0.760096444549607	0.459672490960781	0.588649059692762	-5.91849005226079	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fut8'>Fut8</a>
-Gm19522	-0.603683840589023	-0.590132795422603	-0.755842901826103	0.462139073141416	0.590653973169546	-5.94897829684297	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm19522'>Gm19522</a>
-Mir874	0.295514313563059	4.89511091554138	0.755611590283585	0.462273442629627	0.590653973169546	-6.68933197812847	439	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir874'>Mir874</a>
-5031425E22Rik	0.426232500568612	1.59819729877775	0.753049543565295	0.463763358388416	0.591894845549421	-6.09850103143821	41	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5031425E22Rik'>5031425E22Rik</a>
-2610203C22Rik	0.717338709985131	-0.478497195912167	0.74698345640789	0.46730279346032	0.595745795908632	-5.96274275496501	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610203C22Rik'>2610203C22Rik</a>
-BC039771	0.591670069535226	-0.941052160679803	0.731476967640175	0.476425656973266	0.606698297551894	-5.99117242861284	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BC039771'>BC039771</a>
-B230217O12Rik	0.561095991633646	-0.600743907620917	0.728108334120667	0.478421736774268	0.608560982897926	-5.97636714997683	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B230217O12Rik'>B230217O12Rik</a>
-Pradc1	0.638558125216705	-0.941052160679803	0.720376726518506	0.48302220728867	0.613728662044959	-5.99918286949762	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pradc1'>Pradc1</a>
-4930471I20Rik	0.628368284837395	-0.567561264717375	0.716644411151915	0.48525251902964	0.615389020070981	-5.98432330499153	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930471I20Rik'>4930471I20Rik</a>
-Ubl4	0.588354263449582	-0.00490479042588451	0.716246202469665	0.485490840342292	0.615389020070981	-5.96107461669334	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ubl4'>Ubl4</a>
-Snora31	-0.36143449798853	4.31585910590137	-0.715484366086799	0.485946982545095	0.615389020070981	-6.63976294261444	320	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora31'>Snora31</a>
-Pisd-ps3	0.56333714379083	-0.0202618838990763	0.710204908076067	0.48911506227464	0.618714286092421	-5.96478675414579	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pisd-ps3'>Pisd-ps3</a>
-Dleu2	0.219184098946397	8.12273369604978	0.708956946599182	0.489865734256984	0.618977633208437	-7.01267950795979	4399	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dleu2'>Dleu2</a>
-Ube2w	0.500646796546902	-0.0410931175752576	0.69543523444875	0.498043237514861	0.628614307527053	-5.97437115016694	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ube2w'>Ube2w</a>
-2310040G24Rik	0.521668371480116	-0.848931461409027	0.693309917822119	0.499335854000457	0.629232647004551	-6.01645462006701	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310040G24Rik'>2310040G24Rik</a>
-Gm16973	0.520003601671916	-0.848931461409027	0.692816735376406	0.49963608955839	0.629232647004551	-6.01679548706659	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16973'>Gm16973</a>
-9430091E24Rik	0.632405272014803	1.08345345798668	0.690351426110223	0.501138492660048	0.630428908627469	-6.05646241852674	42	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9430091E24Rik'>9430091E24Rik</a>
-4930599N23Rik	0.731549498463023	-0.297616209139484	0.687698634645228	0.502758111464513	0.631137207128483	-5.99772425069657	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930599N23Rik'>4930599N23Rik</a>
-Uqcc	0.60456771084976	0.00230964680615132	0.687617297753382	0.502807818825408	0.631137207128483	-5.98129860883947	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Uqcc'>Uqcc</a>
-AF357425	-0.469274766892277	0.0356704882223264	-0.683451535972865	0.505357486136066	0.633640540309067	-5.97309261164346	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AF357425'>AF357425</a>
-Lrrc57	0.524349090633768	-1.03317285995058	0.680981371472743	0.506872917877587	0.634389061854647	-6.03572221948629	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Lrrc57'>Lrrc57</a>
-Mir16-2	-0.292148003746823	3.19006469968901	-0.680666215921933	0.507066454348325	0.634389061854647	-6.46705009548147	133	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir16-2'>Mir16-2</a>
-1700052K11Rik	-0.500246978727084	-0.360570136957963	-0.677562993700312	0.508974434943859	0.636078674995556	-5.98437458158914	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700052K11Rik'>1700052K11Rik</a>
-Snord98	0.255484149978109	5.08114085097502	0.673871566865267	0.511249489447753	0.638222830918913	-6.77177075901992	553	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord98'>Snord98</a>
-Pfkfb2	-0.545354000608178	0.424518477657946	-0.670346587478651	0.513427448101524	0.63926739732123	-5.99345507595512	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pfkfb2'>Pfkfb2</a>
-9130221H12Rik	0.493130187244428	-1.03317285995058	0.669887014710966	0.51371179596365	0.63926739732123	-6.04321414453495	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9130221H12Rik'>9130221H12Rik</a>
-Btbd19	-0.547332034034489	-1.13917247326995	-0.669797729280709	0.513767049380866	0.63926739732123	-6.0682117317532	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Btbd19'>Btbd19</a>
-4930509E16Rik	0.570473767057425	-0.600743907620917	0.65989169715578	0.519918547067217	0.646216843359145	-6.02351322613687	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930509E16Rik'>4930509E16Rik</a>
-Srsf9	-0.620398138974306	-0.299891783561682	-0.656391645137278	0.522102062684203	0.647794698934503	-5.99659806286004	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Srsf9'>Srsf9</a>
-4930547E14Rik	-0.479717332437278	-1.13917247326995	-0.656037147154269	0.522323508343333	0.647794698934503	-6.07735963771559	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930547E14Rik'>4930547E14Rik</a>
-Snord92	0.328191137503612	2.71880718071066	0.648008809237884	0.527352904688381	0.653322111020024	-6.3973107671481	106	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord92'>Snord92</a>
-4930526I15Rik	-0.491752882645034	-0.742931848089659	-0.643842626515511	0.529973595048547	0.655856694089363	-6.04251967943561	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930526I15Rik'>4930526I15Rik</a>
-Rmi1	0.481912707053239	-0.63693223477029	0.642382362081087	0.53089389225232	0.656283782296747	-6.03629833075496	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rmi1'>Rmi1</a>
-E2f6	0.599323909462423	-0.393930978374138	0.639357845639497	0.532802879018816	0.656869353859217	-6.02831197673234	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E2f6'>E2f6</a>
-1190002F15Rik	0.49888080484846	-1.42941348513087	0.637507437962788	0.533972699009268	0.656869353859217	-6.09252279377585	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1190002F15Rik'>1190002F15Rik</a>
-Tsix	0.49888080484846	-1.42941348513087	0.637507437962788	0.533972699009268	0.656869353859217	-6.09252279377585	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tsix'>Tsix</a>
-1700034H15Rik	0.543082796194865	-0.788253108012747	0.636899871034629	0.534357113785704	0.656869353859217	-6.04917319027871	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700034H15Rik'>1700034H15Rik</a>
-Adarb1	-0.552066785536743	-0.202135098099839	-0.636790015626986	0.534426637134148	0.656869353859217	-6.00439550621409	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Adarb1'>Adarb1</a>
-Gm2061	0.463825041047814	-1.39322515798149	0.636165822738289	0.534821761380555	0.656869353859217	-6.08891943947055	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm2061'>Gm2061</a>
-G730013B05Rik	-0.555071724179367	-0.202135098099839	-0.634045128592704	0.536165415013138	0.657811546806441	-6.00613726849612	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/G730013B05Rik'>G730013B05Rik</a>
-Etohd2	0.50091939381951	-0.986373420602892	0.626287461136556	0.54109661778882	0.66314848646299	-6.06649536389095	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Etohd2'>Etohd2</a>
-Fendrr	0.467194943660743	-1.03317285995058	0.625054288937282	0.541882799556935	0.663399435938265	-6.07231128308936	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fendrr'>Fendrr</a>
-Mir15a	0.206050012741693	7.92756591993174	0.624069296235348	0.542511213731924	0.663456907682878	-7.05700019883519	3883	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir15a'>Mir15a</a>
-Mir29b-1	-0.568163238783593	-0.484133182103234	-0.613223964954576	0.549456958502096	0.670669357445426	-6.03590249794921	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir29b-1'>Mir29b-1</a>
-Magix	0.459516554314059	-1.07849411987367	0.613025611681336	0.549584442779556	0.670669357445426	-6.08477332483564	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Magix'>Magix</a>
-Ngrn	0.440449993515304	-1.03317285995058	0.608380804083763	0.552574338249185	0.672951153459094	-6.08264752161091	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ngrn'>Ngrn</a>
-Snord22	-0.33412784264152	2.12142786320235	-0.608047224549733	0.552789405985685	0.672951153459094	-6.31148705986951	69	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord22'>Snord22</a>
-1700012D14Rik	0.504465784559469	-0.182193869339848	0.606840054346948	0.553568081556802	0.672951153459094	-6.03643358657414	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700012D14Rik'>1700012D14Rik</a>
-Malat1	0.457988929028296	4.6947660854097	0.606459872307611	0.553813438298062	0.672951153459094	-6.7660970542376	560	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Malat1'>Malat1</a>
-Atp10d	0.608234437022461	-0.360570136957963	0.603954383897974	0.555431872187505	0.674199751240365	-6.05088643641914	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Atp10d'>Atp10d</a>
-Tk2	0.435766247183332	-0.299891783561682	0.584981614285355	0.567770032800142	0.688443791099854	-6.05317939429249	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Tk2'>Tk2</a>
-Sec23b	0.487360009845026	-0.996984532801206	0.581431884228508	0.570094526650815	0.69052850839552	-6.09488450593516	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sec23b'>Sec23b</a>
-Yaf2	0.531934801396187	-0.78261712182168	0.57958011589666	0.571309127139827	0.691265868575337	-6.08386174660212	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Yaf2'>Yaf2</a>
-4930562F07Rik	0.531934801396188	-0.78261712182168	0.573556610573136	0.575269449205912	0.694633374984294	-6.08736043819879	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930562F07Rik'>4930562F07Rik</a>
-Mir25	0.119476823021838	10.3640735387842	0.57349527419075	0.575309850447115	0.694633374984294	-7.25394152331292	19593	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir25'>Mir25</a>
-H2-T10	0.402558884087807	-1.07849411987367	0.57231748519401	0.576085928522387	0.694835142118439	-6.10908404449287	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/H2-T10'>H2-T10</a>
-Ndufs6	0.465406117300006	-0.646065167544005	0.565228910470871	0.580768330016121	0.69791113489181	-6.08343544608261	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ndufs6'>Ndufs6</a>
-4931403G20Rik	0.396304995264058	-1.42941348513087	0.564863424364777	0.581010289039597	0.69791113489181	-6.13656822202315	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4931403G20Rik'>4931403G20Rik</a>
-Gm4265	0.396304995264058	-1.42941348513087	0.564863424364777	0.581010289039597	0.69791113489181	-6.13656822202315	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm4265'>Gm4265</a>
-Dnm1l	0.596675525388084	-0.10266422962704	0.564648152710883	0.581152827607449	0.69791113489181	-6.06110568505703	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnm1l'>Dnm1l</a>
-1600020E01Rik	-0.428368836775209	-1.24517208658932	-0.562576463668063	0.582525489062561	0.69791113489181	-6.14310756515597	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1600020E01Rik'>1600020E01Rik</a>
-B230319C09Rik	-0.413970740406424	-1.03317285995058	-0.56081648487133	0.583692934466204	0.69791113489181	-6.12332847161404	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/B230319C09Rik'>B230319C09Rik</a>
-C230091D08Rik	0.570836755523839	-0.373872894349982	0.560787405184822	0.583712234019791	0.69791113489181	-6.07595261398833	17	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C230091D08Rik'>C230091D08Rik</a>
-Gm12216	0.527434247362	-0.218382196489221	0.560377655595617	0.583984210925728	0.69791113489181	-6.06856161202066	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12216'>Gm12216</a>
-Myeov2	0.3752456737319	-1.07849411987367	0.560141154452764	0.584141221579034	0.69791113489181	-6.11604668250071	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Myeov2'>Myeov2</a>
-2610035D17Rik	-0.409572508644584	-1.03317285995058	-0.557270792901514	0.586048560018765	0.699024554798309	-6.12533252351616	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610035D17Rik'>2610035D17Rik</a>
-Gm10433	-0.411910596355978	-1.03317285995058	-0.556895131904771	0.586298421509187	0.699024554798309	-6.12554413845499	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10433'>Gm10433</a>
-Sfpq	0.534329997707399	0.889926201599616	0.555891096710229	0.586966499094674	0.69909057981944	-6.11137785471773	42	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Sfpq'>Sfpq</a>
-1700011J10Rik	0.529021416706896	0.170420802222486	0.543067267793	0.595533596473573	0.708554570986806	-6.06705821666725	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700011J10Rik'>1700011J10Rik</a>
-1700086O06Rik	0.427757523649846	0.607281696774899	0.539835103869891	0.597702825758803	0.709892527729479	-6.0911847020693	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700086O06Rik'>1700086O06Rik</a>
-Rbm7	0.453647315238698	-0.171582757141534	0.539018521642786	0.598251494919921	0.709892527729479	-6.07445491272463	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rbm7'>Rbm7</a>
-2410137F16Rik	0.346588847488861	-0.941052160679803	0.538612144779345	0.598524637752637	0.709892527729479	-6.12117886037737	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2410137F16Rik'>2410137F16Rik</a>
-Snord1b	0.327856599452274	1.28882447100627	0.522934546604764	0.609109798041057	0.721697071199217	-6.18918715059754	37	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord1b'>Snord1b</a>
-Scarna8	0.41857211258756	-0.498012096151827	0.514323740288517	0.614962686208841	0.727875959506523	-6.10050180568233	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna8'>Scarna8</a>
-8430429K09Rik	0.414916540751085	-0.788253108012747	0.512906371671284	0.615928717589278	0.728263903387944	-6.12271326702371	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/8430429K09Rik'>8430429K09Rik</a>
-Fbxo34	0.40198566998122	0.1102277556672	0.509352622996849	0.618354078512004	0.730374744909107	-6.08031249836236	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fbxo34'>Fbxo34</a>
-Gm12238	0.450619994317534	0.827986746000388	0.506098398216102	0.620579073491806	0.73224480129695	-6.13049162033361	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12238'>Gm12238</a>
-Abhd10	-0.374596139874294	-0.63693223477029	-0.499427866618794	0.625151920071888	0.736262362403135	-6.11479367410621	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Abhd10'>Abhd10</a>
-Gm6793	0.389273388584781	-1.03317285995058	0.498559841769692	0.625748160602701	0.736262362403135	-6.14405724031514	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm6793'>Gm6793</a>
-Gm6225	0.46855445481597	-0.833574367935836	0.498310037608462	0.625919799764278	0.736262362403135	-6.13203165562082	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm6225'>Gm6225</a>
-Gm15545	-0.330712612254716	-1.03317285995058	-0.495988985275263	0.627515656816932	0.736611523333955	-6.15804139536778	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm15545'>Gm15545</a>
-Gm11747	0.335098793325209	-0.0096507717007621	0.495972744971373	0.627526829783269	0.736611523333955	-6.08743592777084	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm11747'>Gm11747</a>
-Mir423	-0.173689502560178	8.7519993946383	-0.492479800459781	0.629932094687387	0.736611523333955	-7.19207867477127	6997	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir423'>Mir423</a>
-Snora43	-0.378883433040629	-0.788253108012747	-0.492233452418481	0.63010189641288	0.736611523333955	-6.13378146663089	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora43'>Snora43</a>
-2610027K06Rik	0.418297137532964	-0.478497195912167	0.491895430681986	0.630334921865253	0.736611523333955	-6.11191956714245	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610027K06Rik'>2610027K06Rik</a>
-Mir147	-0.328652468204269	-1.03317285995058	-0.491676373837183	0.630485957074276	0.736611523333955	-6.16020521199643	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir147'>Mir147</a>
-Gm5095	-0.324568459168512	-1.03317285995058	-0.490626195985013	0.631210270949685	0.736611523333955	-6.16072936854254	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm5095'>Gm5095</a>
-Gm9776	0.388741227193178	-0.941052160679803	0.490378296979785	0.631381305714819	0.736611523333955	-6.1463267385683	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm9776'>Gm9776</a>
-Snord110	0.129319486094622	7.41597550306118	0.48578283224498	0.634555843906532	0.739197500965227	-7.09884262072819	2471	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord110'>Snord110</a>
-Mir30c-2	0.137775378234264	6.42581414345931	0.485294592286323	0.634893559111238	0.739197500965227	-7.01980953500918	1345	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir30c-2'>Mir30c-2</a>
-4930555B11Rik	0.2949397151298	1.99987508225673	0.483042377674677	0.636452504372091	0.740257194177937	-6.35317786250865	61	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930555B11Rik'>4930555B11Rik</a>
-Mir667	-0.391305201966948	-0.848931461409027	-0.475887236012698	0.641417003923651	0.745271691931656	-6.14780781181069	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir667'>Mir667</a>
-A930015D03Rik	0.376646313021944	0.514898879899676	0.473277554456916	0.643232148337921	0.745696184804009	-6.11541875955504	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A930015D03Rik'>A930015D03Rik</a>
-Mir148b	-0.096502203766917	9.5098882524752	-0.472634911746632	0.643679496834764	0.745696184804009	-7.2530384831483	10703	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir148b'>Mir148b</a>
-Mir5114	-0.355477405873343	-0.848931461409028	-0.472543728748277	0.643742981623093	0.745696184804009	-6.14941854830243	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5114'>Mir5114</a>
-Gm11696	0.385891117774572	-1.07849411987367	0.464554766915719	0.649316322766449	0.751389375533994	-6.1657021159416	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm11696'>Gm11696</a>
-Mir3473	-0.35240146171116	-0.63693223477029	-0.461057879770776	0.651762750418594	0.752701819182497	-6.13347427347714	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3473'>Mir3473</a>
-6330549D23Rik	-0.331449829799571	-0.254570523638594	-0.461047742280118	0.651769848687385	0.752701819182497	-6.10197272310564	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/6330549D23Rik'>6330549D23Rik</a>
-2810001G20Rik	-0.295155201235964	-1.24517208658932	-0.455859206316244	0.655407440132046	0.756137400597235	-6.19832965924427	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2810001G20Rik'>2810001G20Rik</a>
-Plscr3	-0.307745114670155	-1.03317285995058	-0.449268914134516	0.660040873119404	0.760713773968929	-6.18050852643307	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Plscr3'>Plscr3</a>
-Mir130a	0.0948947867813811	9.53816266066212	0.446663133142086	0.661876928287154	0.762060116221638	-7.26729031205233	11048	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir130a'>Mir130a</a>
-Scarna2	0.402232211609843	0.691735624844723	0.442282244736368	0.664968822143442	0.764848211759745	-6.14647900407425	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Scarna2'>Scarna2</a>
-A430071A18Rik	-0.354071454044044	-1.24517208658932	-0.433473215739963	0.671205080288204	0.770467803429417	-6.20849188803248	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A430071A18Rik'>A430071A18Rik</a>
-Cd22	-0.354071454044044	-1.24517208658932	-0.433473215739963	0.671205080288204	0.770467803429417	-6.20849188803248	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cd22'>Cd22</a>
-Neat1	0.312359287225155	1.92594411218741	0.430272777772821	0.673477061033794	0.772298820743276	-6.36297140623657	65	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Neat1'>Neat1</a>
-Rhno1	-0.354071454044043	-1.24517208658932	-0.428356577421971	0.674838950443228	0.773083576762774	-6.21074475219862	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rhno1'>Rhno1</a>
-4930426L09Rik	0.280363052731611	-1.13917247326995	0.425550041422787	0.676835754994839	0.774593376578848	-6.19000059303377	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930426L09Rik'>4930426L09Rik</a>
-Mdp1	-0.32178107969573	-0.848931461409027	-0.424206744137332	0.677792382558126	0.774910930359541	-6.17147301088386	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mdp1'>Mdp1</a>
-Mir5100	0.286079733326491	0.406104753719187	0.421137469236957	0.679980324136049	0.776133988892759	-6.12996948354496	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5100'>Mir5100</a>
-5430417L22Rik	0.279090327370704	-1.13917247326995	0.420797856848568	0.680222602009429	0.776133988892759	-6.19205319731848	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5430417L22Rik'>5430417L22Rik</a>
-4930568G15Rik	0.325447035573598	-1.07849411987367	0.415950309958232	0.683684799051212	0.779205515291919	-6.18750841807313	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930568G15Rik'>4930568G15Rik</a>
-Adck5	0.296209487894226	-0.742931848089659	0.415117444464695	0.684280391167838	0.779205515291919	-6.1642627433001	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Adck5'>Adck5</a>
-A230020J21Rik	-0.305089019444194	-0.452690836228738	-0.412631263938286	0.686059583143688	0.780372490447987	-6.13714270799574	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A230020J21Rik'>A230020J21Rik</a>
-3110056K07Rik	0.321778367105555	-0.544811535499514	0.411774615698607	0.686673076608045	0.780372490447987	-6.15031511044177	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/3110056K07Rik'>3110056K07Rik</a>
-Mtf2	-0.351812353895571	-0.349382868103075	-0.407554645656379	0.689698567236507	0.783030910663537	-6.13041218971925	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mtf2'>Mtf2</a>
-BB123696	0.260421273935177	-1.13917247326995	0.404926598716839	0.691585522829203	0.784392725196939	-6.19874553892436	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BB123696'>BB123696</a>
-Irf3	0.298133825217692	-1.07849411987367	0.396206543932785	0.697861753754696	0.790725184740922	-6.19569620036444	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Irf3'>Irf3</a>
-Mir18	-0.210024487848092	2.16031654478057	-0.393337083693313	0.699932088731125	0.792284239327593	-6.42958083480241	62	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir18'>Mir18</a>
-Khdrbs1	0.267969897244776	-0.742931848089659	0.386850701364717	0.704621159953094	0.796801529738831	-6.17582087837821	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Khdrbs1'>Khdrbs1</a>
-E030003E18Rik	0.292822130692984	-0.727574754616467	0.377280776298752	0.711562098861472	0.803190169478922	-6.17832119950389	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E030003E18Rik'>E030003E18Rik</a>
-9530052E02Rik	0.240241697353475	0.0356704882223265	0.376911575171499	0.71183041230099	0.803190169478922	-6.13775517192755	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9530052E02Rik'>9530052E02Rik</a>
-F420014N23Rik	0.382817630756644	-0.117306762957363	0.375641100841847	0.712754019798555	0.803190169478922	-6.1456273280473	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/F420014N23Rik'>F420014N23Rik</a>
-Mir5129	-0.298231732945833	-0.452690836228738	-0.375183978987274	0.713086451956309	0.803190169478922	-6.15215700511858	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5129'>Mir5129</a>
-Mir219-1	0.176264413953521	2.53670005639744	0.373534816743211	0.714286272130486	0.803748162229669	-6.50734777259605	90	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir219-1'>Mir219-1</a>
-Mir872	0.111217220149994	5.81048191699923	0.367908518024425	0.718385472265704	0.807166686595139	-7.01869601020665	859	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir872'>Mir872</a>
-Snhg9	-0.314719071095367	0.412167068430586	-0.365994199209784	0.719782263529738	0.807166686595139	-6.14978861932683	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snhg9'>Snhg9</a>
-Snora78	-0.314719071095367	0.412167068430586	-0.365994199209784	0.719782263529738	0.807166686595139	-6.14978861932683	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora78'>Snora78</a>
-Orc4	0.297794064812266	-0.544811535499514	0.36548500236509	0.720153976296101	0.807166686595139	-6.16865012392074	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Orc4'>Orc4</a>
-Dnajc24	0.266599549793499	-0.558690449548107	0.354534559090483	0.728165394656301	0.815345157313876	-6.17320373339602	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dnajc24'>Dnajc24</a>
-6720483E21Rik	0.289583824911831	-0.147092730894626	0.350649982201204	0.731015369891102	0.817733859848772	-6.15445263472245	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/6720483E21Rik'>6720483E21Rik</a>
-2310001K24Rik	-0.24591482502991	-1.03317285995058	-0.345230837127148	0.734998083052978	0.821383753930899	-6.22275270624135	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2310001K24Rik'>2310001K24Rik</a>
-Alg9	0.309421795900789	-0.676617508502311	0.343236944974775	0.736465460344019	0.822218287918323	-6.18698179945559	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Alg9'>Alg9</a>
-Snora81	-0.326932802874368	0.0115007762338971	-0.341850898914962	0.737486130537647	0.822552956933974	-6.14759719106399	22	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora81'>Snora81</a>
-BB283400	-0.279424707462514	-1.03317285995058	-0.340367255810976	0.738579239356336	0.822967687603104	-6.22446215814992	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/BB283400'>BB283400</a>
-Mir466d	0.248413625738754	-1.13917247326995	0.320824573653718	0.753031659736241	0.838252803667367	-6.2299984743374	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir466d'>Mir466d</a>
-Mir10a	0.0951038511256634	14.8586469353474	0.311728572155646	0.759791705201772	0.844953543504115	-7.67496459069947	435679	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir10a'>Mir10a</a>
-Gm4890	-0.220857818504799	-1.24517208658932	-0.310290622719027	0.760862255053954	0.845320187942124	-6.25544681917468	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm4890'>Gm4890</a>
-6720401G13Rik	0.289187406074058	-1.11660094256472	0.307349482960207	0.763053506555847	0.84693001068115	-6.23186816538886	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/6720401G13Rik'>6720401G13Rik</a>
-5430402O13Rik	-0.217791204402388	-1.24517208658932	-0.304855090219651	0.764913568480844	0.847346001588973	-6.25716634200865	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5430402O13Rik'>5430402O13Rik</a>
-Gm6297	-0.217791204402388	-1.24517208658932	-0.304855090219651	0.764913568480844	0.847346001588973	-6.25716634200865	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm6297'>Gm6297</a>
-Mir877	-0.206666454163989	1.57934953392826	-0.297694706970739	0.77026137051895	0.852442506073833	-6.34009404640788	45	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir877'>Mir877</a>
-Nol8	0.264698853020979	-0.386376496641391	0.293585635346632	0.7733357709552	0.855015614980507	-6.18259191534761	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nol8'>Nol8</a>
-Snord58b	0.282727046691085	4.4176355838932	0.288358932677936	0.777252081328622	0.858513673568207	-6.87726871780058	394	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord58b'>Snord58b</a>
-Gm10785	-0.210547737676215	-1.07849411987367	-0.283356828799375	0.781005991911092	0.861118429107723	-6.24760352460985	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10785'>Gm10785</a>
-1110019D14Rik	-0.222492569746086	-0.941052160679803	-0.283205434775104	0.781119696868092	0.861118429107723	-6.23175173996211	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1110019D14Rik'>1110019D14Rik</a>
-2010320M18Rik	0.206496077148502	-0.299891783561682	0.277852680238545	0.785143217405954	0.864718543494396	-6.18149015495467	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2010320M18Rik'>2010320M18Rik</a>
-Ccdc11	0.204900539151867	-1.13917247326995	0.274068094032085	0.787991843292579	0.866356392494407	-6.24428661528185	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ccdc11'>Ccdc11</a>
-Zfp821	-0.202147777847892	-1.24517208658932	-0.273859508838947	0.788148935503238	0.866356392494407	-6.26639816102087	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zfp821'>Zfp821</a>
-Rtel1	0.201978478856495	-1.13917247326995	0.269324663439279	0.791566624557495	0.869275763830705	-6.24561211960019	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rtel1'>Rtel1</a>
-Cyp4f41-ps	0.196688936671879	-1.04705177399917	0.266646009723831	0.793587488192855	0.870657042334661	-6.24445495366917	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cyp4f41-ps'>Cyp4f41-ps</a>
-Gm10033	0.211295954535854	-0.798864220211061	0.265102653487238	0.794752545801563	0.870977274346489	-6.2215520620046	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10033'>Gm10033</a>
-Gm15713	-0.213339795720713	-0.788253108012747	-0.264237229142785	0.795406064740615	0.870977274346489	-6.22144581162811	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm15713'>Gm15713</a>
-9930014A18Rik	0.202831120802033	-0.590132795422603	0.261795875496793	0.797250491951153	0.872159934147906	-6.20377372854167	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9930014A18Rik'>9930014A18Rik</a>
-4930429F24Rik	-0.235017737171845	-0.590132795422603	-0.260029712720504	0.798585600641395	0.872783688057311	-6.20264241644327	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930429F24Rik'>4930429F24Rik</a>
-Slc12a4	0.197276741970114	-0.590132795422603	0.255487613570678	0.802022135394515	0.875700723909226	-6.2054471610575	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Slc12a4'>Slc12a4</a>
-Dos	0.183309425420969	-1.13917247326995	0.253065969585285	0.803856084462768	0.876864046244759	-6.24998160826913	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dos'>Dos</a>
-Gm3086	0.181314808962686	-1.13917247326995	0.250796184607887	0.805576116449452	0.877901001784933	-6.25057017845262	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm3086'>Gm3086</a>
-Svip	-0.191457734911026	-1.13917247326995	-0.248964250053628	0.806965109263563	0.878457915019561	-6.26035672094373	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Svip'>Svip</a>
-4930467D21Rik	0.181314808962687	-1.13917247326995	0.248091662395482	0.807626952546468	0.878457915019561	-6.25126461835207	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930467D21Rik'>4930467D21Rik</a>
-Peg13	-0.205451957492413	-0.392012482832458	-0.240462116640139	0.813420288672865	0.88391671369118	-6.19004292428062	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Peg13'>Peg13</a>
-Pafah1b1	0.213436895760378	1.10038900250084	0.237624832608292	0.815577632686837	0.885417772498269	-6.26459265250452	40	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Pafah1b1'>Pafah1b1</a>
-Snord88a	-0.0731689826617632	5.35276818255428	-0.231022702481669	0.820603573853006	0.890027260234107	-7.01600278328706	589	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord88a'>Snord88a</a>
-Mir451	-0.0611495321193691	10.5875987299641	-0.22852689183222	0.822505679316192	0.891243096011182	-7.41440171692514	23834	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir451'>Mir451</a>
-Gm7367	-0.156676018697354	-0.941052160679803	-0.22725891434218	0.823472473631732	0.891444110449532	-6.24643601325685	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm7367'>Gm7367</a>
-4921511C10Rik	0.182682113759512	-0.788253108012747	0.224188388947209	0.825814884315388	0.893132495738253	-6.23070631729261	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4921511C10Rik'>4921511C10Rik</a>
-Rmrp	0.0655095097323271	7.670330005123	0.217766244863006	0.830719680954736	0.897584295976066	-7.21766694613943	3178	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rmrp'>Rmrp</a>
-Ufd1l	0.195771351763775	-1.16497883295338	0.216430843996505	0.831740495954836	0.897584295976066	-6.26197687991093	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ufd1l'>Ufd1l</a>
-Snord70	0.10221174934082	2.60861620211668	0.21571068481477	0.832291135094371	0.897584295976066	-6.57150704500313	92	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord70'>Snord70</a>
-Mrpl15	0.14880859252168	0.33979041413184	0.210945385298102	0.835937006061044	0.900604863671905	-6.19219624410467	16	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mrpl15'>Mrpl15</a>
-Prmt1	0.168995528929063	-0.61462282166951	0.209987168816182	0.836670600781962	0.900604863671905	-6.21815488399073	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Prmt1'>Prmt1</a>
-Dio3os	-0.170981896180084	-0.360570136957963	-0.203892664909895	0.841340111913074	0.904777632132722	-6.19710106994991	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Dio3os'>Dio3os</a>
-Mir5122	0.137338174750326	0.909823171643444	0.202469317623695	0.842431557085991	0.905098311332501	-6.24373086611934	25	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5122'>Mir5122</a>
-AF357426	0.146994795882059	-0.925695067206612	0.198977007139408	0.845110934201941	0.907122837181952	-6.25084617139261	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/AF357426'>AF357426</a>
-Mir1940	-0.125092164153929	-0.148570910319225	-0.197867539305057	0.845962560042597	0.907183534782522	-6.18834145281798	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1940'>Mir1940</a>
-Zmynd8	-0.133555302246356	1.10038900250084	-0.196079492196291	0.847335481986915	0.907736573107103	-6.27212529839997	30	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zmynd8'>Zmynd8</a>
-Rit1	0.164276960637274	-0.742931848089659	0.19512393531283	0.848069401342832	0.907736573107103	-6.2329898157428	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rit1'>Rit1</a>
-A330093E20Rik	-0.166436728635281	-0.529454442026323	-0.193988877004694	0.848941377328815	0.907818286346933	-6.21302114126874	9	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A330093E20Rik'>A330093E20Rik</a>
-Zc3h7a	-0.166703851628381	4.97783950558816	-0.189789214512805	0.852169421422477	0.910416956781879	-6.97955880875527	754	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Zc3h7a'>Zc3h7a</a>
-Ftx	0.0504324766144679	6.86722045285186	0.186700290456373	0.854545461173525	0.911489026597255	-7.16164366317441	1746	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ftx'>Ftx</a>
-C730002L08Rik	-0.131614117041705	-0.941052160679803	-0.186271197576372	0.854875641216881	0.911489026597255	-6.25516561907766	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C730002L08Rik'>C730002L08Rik</a>
-4930583K01Rik	-0.148007765096514	-0.742931848089659	-0.185369656315026	0.855569454413374	0.911489026597255	-6.2348331965382	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930583K01Rik'>4930583K01Rik</a>
-Snord61	0.0907359318616479	3.7128223821274	0.180846592738436	0.859052196853419	0.914286401155283	-6.78522682866309	233	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snord61'>Snord61</a>
-Fam214b	0.16820554523756	-0.193892170242314	0.179683525243946	0.859948249575887	0.914286401155283	-6.2001202438586	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fam214b'>Fam214b</a>
-Nnt	-0.179572835568388	2.32886502522719	-0.178838866016564	0.860599119054141	0.914286401155283	-6.52700074446877	121	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nnt'>Nnt</a>
-Rbmx	0.0865169681824078	3.76765216278315	0.174526413007477	0.863923795040316	0.916964697805581	-6.796283925268	240	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rbmx'>Rbmx</a>
-4930473A02Rik	0.109648341099376	-1.04705177399917	0.164042278471314	0.872017542480434	0.924695182128416	-6.267217819505	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930473A02Rik'>4930473A02Rik</a>
-1110002L01Rik	-0.117583232855061	-1.27661443246381	-0.15904757936708	0.875878740745282	0.926998609682585	-6.28744474569536	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1110002L01Rik'>1110002L01Rik</a>
-Snora34	0.113255539654068	0.926496598553157	0.158111032892598	0.87660311478273	0.926998609682585	-6.25496403965504	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora34'>Snora34</a>
-Mir1306	-0.0980764865609146	0.590346152260739	-0.157138454831744	0.877355478875916	0.926998609682585	-6.21667496967709	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1306'>Mir1306</a>
-Fance	-0.140169830118825	-1.13917247326995	-0.156010049757285	0.878228541143718	0.926998609682585	-6.27977120680639	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fance'>Fance</a>
-Snora47	0.0984116028006845	0.141670101541695	0.15597977243771	0.878251969383764	0.926998609682585	-6.19661177976075	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora47'>Snora47</a>
-9330020H09Rik	-0.118716898832216	-0.880373807283523	-0.15161129600864	0.881633474249955	0.928922046091183	-6.25469072285892	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9330020H09Rik'>9330020H09Rik</a>
-Ppargc1a	0.131863677613015	0.0735991124007457	0.151522129473541	0.881702520523007	0.928922046091183	-6.1971928092207	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ppargc1a'>Ppargc1a</a>
-Ccdc77	0.125473874965672	-0.788253108012747	0.147530169260755	0.884794715485482	0.931319898864331	-6.24537213273817	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ccdc77'>Ccdc77</a>
-Gm16291	-0.137648313668149	-0.0655831438221648	-0.145738917274025	0.886182865432267	0.93192133590619	-6.19632184114116	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16291'>Gm16291</a>
-4930527F14Rik	-0.115142188483818	-1.13917247326995	-0.142774358438664	0.888481131158281	0.932061058543482	-6.28181384714649	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930527F14Rik'>4930527F14Rik</a>
-Cnot2	0.138596259908812	-0.0491775771623832	0.142715474719377	0.888526791198434	0.932061058543482	-6.19956411508142	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Cnot2'>Cnot2</a>
-Gm16039	0.0860006893041729	0.989643407906595	0.141187247205111	0.889711963452007	0.932061058543482	-6.26618211598301	27	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm16039'>Gm16039</a>
-1700007J10Rik	-0.113205756535242	-0.788253108012747	-0.140564172695348	0.890195249337243	0.932061058543482	-6.24719705198026	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700007J10Rik'>1700007J10Rik</a>
-Nup88	-0.124975737193874	-0.239213430165402	-0.139113735537381	0.891320451556099	0.932061058543482	-6.20078805666017	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Nup88'>Nup88</a>
-Mir1946b	-0.11008548363065	0.157027195014887	-0.13736714896008	0.892675718878866	0.932061058543482	-6.19984394272254	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1946b'>Mir1946b</a>
-Mirlet7g	0.0395844887395015	11.1837033910963	0.136145707336603	0.893623705801407	0.932061058543482	-7.47148737731621	38152	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7g'>Mirlet7g</a>
-Gm10548	-0.0899680772947313	-0.34669122290937	-0.136099070118153	0.89365990529298	0.932061058543482	-6.20842396396051	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm10548'>Gm10548</a>
-1810034E14Rik	-0.075352723109679	2.06893973454929	-0.136089081740893	0.893667658235381	0.932061058543482	-6.48017984570887	64	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1810034E14Rik'>1810034E14Rik</a>
-4931440J10Rik	0.0849667984841879	0.325911500083247	0.126806897573872	0.900877218801809	0.938600049942131	-6.20615379472686	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4931440J10Rik'>4931440J10Rik</a>
-D330022K07Rik	-0.101032157727657	1.65698316208093	-0.125899476060991	0.901582519488672	0.938600049942131	-6.39470229837695	56	<a href='http://www.genecards.org/index.php?path=/Search/keyword/D330022K07Rik'>D330022K07Rik</a>
-C330013E15Rik	-0.103267266578104	-0.742931848089659	-0.124450397809002	0.90270900568535	0.938916112567898	-6.24455208288828	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/C330013E15Rik'>C330013E15Rik</a>
-5930430L01Rik	0.136225847581219	-0.214062543734675	0.119769549531324	0.906349281099135	0.941260828400483	-6.20916672317144	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/5930430L01Rik'>5930430L01Rik</a>
-Mir496	0.0950067476259783	-0.0703291250970423	0.119430311967314	0.90661319054525	0.941260828400483	-6.20237905877004	13	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir496'>Mir496</a>
-Mir669a-1	-0.0874831731028778	0.143148280966294	-0.118249227240961	0.907532102973484	0.941358299538859	-6.20192887859536	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir669a-1'>Mir669a-1</a>
-Thap6	-0.0878168955885893	-0.558690449548107	-0.115414375847903	0.909738243408161	0.942789587401192	-6.2280381796423	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Thap6'>Thap6</a>
-Chpt1	-0.127661446694368	0.920094239341047	-0.11067734520755	0.913426413354199	0.945752756476534	-6.25776602096988	61	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Chpt1'>Chpt1</a>
-Mir101a	0.0244432527205966	10.3082648606422	0.106757481268119	0.916479919716901	0.948054023931989	-7.4177003681481	19692	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir101a'>Mir101a</a>
-E130102H24Rik	0.0240283211557467	10.3090843068977	0.10496799166705	0.917874358796149	0.94863645234276	-7.4179565369203	19702	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E130102H24Rik'>E130102H24Rik</a>
-Mir425	0.033427373456698	6.66465089052376	0.101272505699857	0.920754905156141	0.950345151621533	-7.15835044873542	1583	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir425'>Mir425</a>
-Mir362	-0.0544522631314578	3.35231486548691	-0.100710009948844	0.921193459854001	0.950345151621533	-6.73276860148804	169	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir362'>Mir362</a>
-Mir17	0.0294271489414047	5.12380283689553	0.0952058023213346	0.925486243109504	0.953911294840058	-7.01165582330098	534	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir17'>Mir17</a>
-E230016M11Rik	-0.0696354231248524	-0.941052160679803	-0.0918911504840257	0.928072541539687	0.955713691242584	-6.26870805660384	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E230016M11Rik'>E230016M11Rik</a>
-Chkb	0.0776691859878007	0.62903919856468	0.0899505655256887	0.929587100348321	0.956253428651282	-6.22872128912026	28	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Chkb'>Chkb</a>
-Arhgap1	0.0966234721391633	-0.198705450261483	0.0890720608925429	0.930272835935954	0.956253428651282	-6.21090676133964	18	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Arhgap1'>Arhgap1</a>
-2610002J02Rik	-0.0573974454417385	-0.742931848089659	-0.0830721604333289	0.93495769271309	0.959921241425124	-6.24897822876549	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2610002J02Rik'>2610002J02Rik</a>
-4921531C22Rik	-0.0635851168193281	-0.941052160679803	-0.0822890634566592	0.93556934061789	0.959921241425124	-6.26957168238787	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4921531C22Rik'>4921531C22Rik</a>
-Srsf7	0.0705092857951172	-0.798864220211061	0.0812705943953252	0.936364891942299	0.959921241425124	-6.25432076732456	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Srsf7'>Srsf7</a>
-1700020I14Rik	0.0749473297339094	0.656660491848086	0.0792648453094152	0.937931837290533	0.960664476075851	-6.23371457269478	32	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1700020I14Rik'>1700020I14Rik</a>
-2210015D19Rik	0.0647102732837292	-1.23129317254072	0.0766096103443329	0.940006587546541	0.961787864403415	-6.29126291736405	5	<a href='http://www.genecards.org/index.php?path=/Search/keyword/2210015D19Rik'>2210015D19Rik</a>
-4732416N19Rik	0.0594207089292347	-0.239213430165402	0.0757037539631176	0.940714510669773	0.961787864403415	-6.21193843190686	11	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4732416N19Rik'>4732416N19Rik</a>
-Mir4660	0.0657262988065859	0.507946560272087	0.0713313665087823	0.944132233479521	0.964417975291077	-6.22141853049579	26	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir4660'>Mir4660</a>
-Mir5113	0.0484940420860439	-0.452690836228738	0.0682297423584027	0.946557346616918	0.966030351064315	-6.22526905240972	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir5113'>Mir5113</a>
-E530011L22Rik	-0.0404713843408522	-1.27661443246381	-0.0613724386888617	0.951920883212834	0.970284520587158	-6.29857782441741	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/E530011L22Rik'>E530011L22Rik</a>
-Gm15441	0.0426104096369733	1.51577639605449	0.0604630248332405	0.952632381396158	0.970284520587158	-6.37051029075163	43	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm15441'>Gm15441</a>
-Fam172a	0.0503754462959195	0.409161384184755	0.0596392630819191	0.953276904100091	0.970284520587158	-6.21618388102567	23	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Fam172a'>Fam172a</a>
-Rbm18	-0.0538668143348915	-0.299891783561682	-0.0557642901053547	0.956309184092742	0.972503368137093	-6.21475268708383	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rbm18'>Rbm18</a>
-Gm12191	-0.0354587706805078	-0.880373807283523	-0.0497068478436261	0.961050697355324	0.975480839012736	-6.26527518040501	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Gm12191'>Gm12191</a>
-Rprl3	0.0408471478447264	-0.798864220211061	0.0488367850296659	0.961731876147215	0.975480839012736	-6.25649782741468	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Rprl3'>Rprl3</a>
-H19	-0.0415019911233814	-0.880373807283523	-0.0480992443304892	0.962309326654761	0.975480839012736	-6.26535636348749	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/H19'>H19</a>
-Ppifos	-0.045813233148843	-0.325698143245111	-0.047655434486338	0.962656813959983	0.975480839012736	-6.21600758126971	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ppifos'>Ppifos</a>
-Mirlet7a-2	-0.0146726577509692	3.37472927372453	-0.0386745178686727	0.969690141624003	0.981735981892624	-6.74139737131634	158	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mirlet7a-2'>Mirlet7a-2</a>
-9530082P21Rik	-0.027891459987058	-1.27661443246381	-0.0346374807689275	0.972852600944678	0.983192929741255	-6.29990631175915	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/9530082P21Rik'>9530082P21Rik</a>
-Mir1196	-0.027891459987058	-1.27661443246381	-0.0346374807689275	0.972852600944678	0.983192929741255	-6.29990631175915	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1196'>Mir1196</a>
-Kcnk2	-0.0253403588431765	-0.835052547360434	-0.031369255395874	0.975413152136616	0.984908324414052	-6.26109829686273	7	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Kcnk2'>Kcnk2</a>
-A930011G23Rik	-0.0241809579465951	-0.00965077170076215	-0.0291709235913898	0.977135635463562	0.985775207837245	-6.2074206456237	12	<a href='http://www.genecards.org/index.php?path=/Search/keyword/A930011G23Rik'>A930011G23Rik</a>
-Mir3103	0.0180714470554271	-1.13917247326995	0.0259355368025229	0.979670906552206	0.987459809519494	-6.2920042186438	4	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir3103'>Mir3103</a>
-Snora75	-0.0172327656019052	-0.590132795422603	-0.021476287065286	0.983165572405378	0.989793060148976	-6.23767380603265	10	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Snora75'>Snora75</a>
-4930414L22Rik	-0.0152743869054217	-0.484133182103234	-0.0207679670021376	0.983720710086713	0.989793060148976	-6.22874423282067	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/4930414L22Rik'>4930414L22Rik</a>
-Mipep	0.0164012673799433	-0.280376883322022	0.0179445082376201	0.985933647271923	0.991145631310365	-6.21618933242714	14	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mipep'>Mipep</a>
-Ippk	-0.0101933209515463	0.0857377294202925	-0.0128542290662295	0.989923536727642	0.99288598158411	-6.20831119150974	15	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Ippk'>Ippk</a>
-Mir598	-0.00787301950188535	1.52736379718861	-0.0127956250729132	0.989969473858512	0.99288598158411	-6.3747989571524	44	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir598'>Mir598</a>
-1500017E21Rik	0.0125149432592357	0.202348454937975	0.0124053255048405	0.990275413709656	0.99288598158411	-6.21004071500431	20	<a href='http://www.genecards.org/index.php?path=/Search/keyword/1500017E21Rik'>1500017E21Rik</a>
-Map1lc3a	0.00968300434227123	0.00717248334519302	0.0097742078067436	0.992337878036726	0.994080350166729	-6.20806203375241	21	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Map1lc3a'>Map1lc3a</a>
-Trappc13	-0.00465914834988075	-0.880373807283523	-0.00622703745231414	0.995118499154886	0.995991410119056	-6.26653097741332	6	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Trappc13'>Trappc13</a>
-Mir1966	-0.00246570556544304	-0.590132795422603	-0.00337044327478241	0.997357828291427	0.997357828291427	-6.23790561933129	8	<a href='http://www.genecards.org/index.php?path=/Search/keyword/Mir1966'>Mir1966</a>

--- a/test-data/gentestdata.sh	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-#!/bin/bash
-# generate test data for rgGSEA
-# ross lazarus June 2013 
-# adjust gseajar_path !
-GSEAJAR_PATH=/home/rlazarus/galaxy-central/tool_dependency_dir/gsea_jar/2.0.12/fubar/rg_gsea_test/8e291f464aa0/jars/gsea2-2.0.12.jar
-python ../rgGSEA.py --input_tab "gsea_test_DGE.xls"  --adjpvalcol "5" --signcol "2" --idcol "1" --outhtml "gseatestout.html" --input_name "gsea_test" --setMax "500" --setMin "15" --nPerm "10" --plotTop "20" --gsea_jar "$GSEAJAR_PATH" --output_dir "gseatestout" --mode "Max_probe" 
---title "GSEA test" --builtin_gmt "gseatestdata.gmt"
-
-

--- a/test-data/test_bams2mx.xls	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3243 +0,0 @@
-Contigname	11706Liv_CAAAAG_L003_R1_001_trimmed.fastq_bwa.sam.bam	11706He_AGTTCC_L001_R1_001_trimmed.fastq_bwa.sam.bam	11699He_GGCTAC_L001_R1_001_trimmed.fastq_bwa.sam.bam	11698He_TAGCTT_L001_R1_001_trimmed.fastq_bwa.sam.bam	11700Liv_ATTCCT_L003_R1_001_trimmed.fastq_bwa.sam.bam	11698Liv_ACTGAT_L003_R1_001_trimmed.fastq_bwa.sam.bam	11699Liv_ATGAGC_L003_R1_001_trimmed.fastq_bwa.sam.bam	11700He_CTTGTA_L001_R1_001_trimmed.fastq_bwa.sam.bam
-0610005C13Rik	40	0	2	0	6	70	6	2
-0610007N19Rik	10	17	11	42	2	6	6	10
-0610008F07Rik	16	0	0	0	8	5	4	1
-0610009B14Rik	0	0	0	1	0	0	0	0
-0610009L18Rik	3	2	2	11	0	1	1	1
-0610012G03Rik	6	0	0	0	4	5	2	0
-0610031O16Rik	33	0	0	0	10	25	10	0
-0610038B21Rik	0	0	0	2	0	0	0	0
-0610038L08Rik	0	0	0	0	0	3	0	0
-0610039K10Rik	9	0	0	1	3	1	4	3
-0610040B10Rik	0	0	0	0	0	0	2	0
-0610040F04Rik	2	1	0	1	2	5	2	0
-0610043K17Rik	9	2	0	4	4	12	0	1
-1110002L01Rik	3	1	0	0	0	0	0	0
-1110006O24Rik	0	0	0	1	0	0	0	0
-1110015O18Rik	0	0	0	0	0	0	0	0
-1110017D15Rik	0	0	0	0	0	2	0	0
-1110019D14Rik	1	1	1	0	0	0	2	0
-1110020A21Rik	2	0	0	2	0	2	6	0
-1110028F11Rik	0	0	0	0	0	0	0	0
-1110028F18Rik	0	0	0	0	0	0	0	0
-1110035M17Rik	0	0	0	0	0	0	0	1
-1110036E04Rik	0	0	0	0	0	0	0	0
-1110038B12Rik	9406	1346	1212	1600	7604	6486	8084	1328
-1110046J04Rik	0	0	0	0	0	0	0	1
-1110054M08Rik	6	1	0	1	0	6	1	1
-1190002F15Rik	0	0	0	0	0	4	0	0
-1300002E11Rik	10	1	0	0	0	17	0	0
-1300015D01Rik	0	0	0	0	1	2	0	0
-1500002O10Rik	0	0	0	0	0	0	0	0
-1500004A13Rik	0	0	0	0	0	0	0	0
-1500009C09Rik	0	0	0	0	0	0	0	0
-1500011B03Rik	0	0	0	0	1	0	0	0
-1500011K16Rik	0	0	0	1	0	4	2	0
-1500012K07Rik	0	0	0	0	0	0	0	0
-1500015A07Rik	0	0	0	0	0	0	0	0
-1500015L24Rik	2	0	0	0	0	2	0	0
-1500016L03Rik	0	0	0	0	0	0	0	0
-1500017E21Rik	4	1	3	0	0	7	1	4
-1600002D24Rik	0	0	1	2	0	2	0	2
-1600010M07Rik	0	0	0	0	0	0	0	0
-1600019K03Rik	0	0	0	0	0	0	0	0
-1600020E01Rik	2	0	0	0	0	0	0	2
-1600023N17Rik	0	0	0	0	0	0	1	0
-1600025M17Rik	0	0	0	0	0	0	0	0
-1600029I14Rik	1	0	0	0	0	0	0	0
-1600029O15Rik	0	0	0	0	0	0	0	0
-1700001D01Rik	0	0	0	0	0	0	0	1
-1700001G11Rik	0	0	0	0	0	0	0	0
-1700001G17Rik	1	0	0	0	0	0	0	1
-1700001J11Rik	0	0	0	0	0	0	0	0
-1700001K23Rik	0	0	0	0	0	0	0	0
-1700001L05Rik	6	0	0	0	0	6	4	0
-1700001O22Rik	0	0	0	0	0	0	0	0
-1700003C15Rik	0	0	0	0	0	0	0	0
-1700003D09Rik	1	0	0	0	0	1	0	0
-1700003F17Rik	1	2	1	4	0	2	0	6
-1700003G13Rik	0	0	0	0	0	0	0	0
-1700003G18Rik	2	0	0	1	0	0	0	0
-1700003H04Rik	0	0	0	0	0	0	0	0
-1700003L19Rik	0	5	4	12	0	0	0	2
-1700003M07Rik	0	0	0	0	0	0	0	0
-1700003P14Rik	0	0	0	0	0	0	0	0
-1700006F04Rik	0	0	0	0	0	0	0	0
-1700006H21Rik	0	0	0	0	0	0	0	0
-1700007F19Rik	0	0	0	0	0	0	0	0
-1700007J10Rik	0	0	0	2	1	3	0	1
-1700007L15Rik	0	0	0	0	0	0	1	0
-1700007P06Rik	0	0	0	0	0	0	0	0
-1700008J07Rik	4	0	0	0	1	0	3	1
-1700008K24Rik	0	0	0	0	0	0	0	0
-1700009C05Rik	0	0	0	1	0	0	0	0
-1700009J07Rik	0	0	0	0	0	0	0	0
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-1700011J10Rik	1	2	0	2	9	0	7	1
-1700011M02Rik	0	0	0	0	0	0	0	0
-1700012B15Rik	7	0	0	0	2	8	1	1
-1700012D01Rik	1	1	1	0	1	2	1	0
-1700012D14Rik	5	0	0	5	2	2	0	1
-1700012I11Rik	0	2	0	0	0	0	0	0
-1700013G23Rik	0	0	0	0	0	0	0	0
-1700016G22Rik	0	0	0	0	0	0	0	0
-1700016L04Rik	0	0	0	0	0	0	0	0
-1700016L21Rik	0	0	0	0	0	0	0	0
-1700016P04Rik	0	0	0	0	0	0	0	0
-1700017G19Rik	0	0	0	0	0	0	0	0
-1700017J07Rik	0	0	0	0	0	0	0	0
-1700018A04Rik	0	0	0	0	2	1	0	0
-1700018B24Rik	0	0	0	0	0	0	0	0
-1700018G05Rik	0	0	0	0	0	0	0	0
-1700018L02Rik	8	1	0	0	4	6	0	1
-1700019B21Rik	0	0	0	0	0	0	0	0
-1700019E08Rik	0	0	0	0	0	0	0	0
-1700019G24Rik	0	0	0	0	0	0	0	0
-1700020G17Rik	0	1	1	1	0	0	0	0
-1700020I14Rik	6	4	0	6	0	12	2	2
-1700020M21Rik	0	0	0	0	0	0	0	0
-1700020N01Rik	0	0	0	0	0	0	0	0
-1700020N18Rik	0	0	0	0	0	0	0	0
-1700021N21Rik	0	0	0	0	0	0	0	0
-1700022A21Rik	0	0	0	0	0	0	0	0
-1700022A22Rik	0	0	0	0	0	0	0	0
-1700022E09Rik	0	0	0	0	0	0	0	0
-1700022H16Rik	0	0	0	0	0	0	0	0
-1700023C21Rik	0	0	0	0	0	0	0	0
-1700023F02Rik	0	0	0	0	0	0	0	0
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-1700024F13Rik	0	0	0	0	0	0	0	0
-1700024P03Rik	0	0	0	0	0	0	1	0
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-1700026F02Rik	0	0	0	0	0	0	0	0
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-1700027F09Rik	0	0	0	0	0	0	0	0
-1700027H10Rik	0	0	0	0	0	0	0	0
-1700027I24Rik	0	0	0	0	0	0	0	0
-1700027J07Rik	1	0	1	0	0	0	0	0
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-1700028D13Rik	0	0	0	0	0	0	0	0
-1700028E10Rik	3	0	0	2	3	1	2	0
-1700028I16Rik	0	0	0	0	0	0	0	0
-1700028J19Rik	0	0	0	0	0	0	0	0
-1700028M03Rik	0	0	0	0	0	0	0	0
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-Nutf2-ps1	0	0	0	1	0	1	0	0
-Oas1b	0	0	1	0	0	2	0	0
-Oaz1-ps	5	2	6	2	11	7	4	4
-Olfr1077-ps1	0	0	0	0	0	0	0	0
-Olfr1300-ps1	0	0	0	0	0	0	0	0
-Olfr1372-ps1	0	0	0	0	0	0	0	0
-Olfr29-ps1	0	0	0	0	0	0	0	0
-Olfr421-ps1	0	0	0	0	0	0	0	0
-Olfr75-ps1	0	0	0	0	0	0	0	0
-Olfr856-ps1	0	0	0	1	0	1	0	0
-Olfr947-ps1	0	0	0	0	0	0	0	0
-Oprl1	0	0	0	0	0	0	0	0
-Orc4	1	2	0	1	1	4	0	0
-Orc6	1	1	0	0	1	1	1	0
-Osbpl1a	9	0	2	1	1	36	0	3
-Otub2	0	0	0	0	0	2	1	0
-Otx2os1	1	0	1	0	0	0	0	0
-Oxsr1	9	1	1	1	0	10	1	1
-Pafah1b1	8	3	3	2	0	16	4	4
-Parp6	8	0	2	4	0	8	2	0
-Patz1	0	0	0	2	0	0	0	0
-Pax6os1	0	0	0	0	0	0	0	0
-Pcdh11x	2	0	0	0	0	0	0	0
-Pdxk-ps	0	0	0	0	0	0	0	0
-Pea15b	0	0	0	0	0	0	0	0
-Peg13	3	0	1	1	0	4	0	2
-Peg3as	0	0	0	0	0	0	0	0
-Pex11b	4	0	0	2	0	4	0	0
-Pex16	12	0	0	1	2	7	8	0
-Pfkfb2	3	1	3	3	0	8	1	2
-Pglyrp2	12	0	0	0	0	15	0	0
-Phc1	0	0	0	0	0	1	0	0
-Phf21b	0	0	1	0	0	0	0	0
-Phxr4	0	0	0	0	0	0	0	0
-Phyhd1	5	0	0	0	1	12	2	0
-Pinc	0	1	0	1	0	0	0	1
-Pisd-ps1	0	0	0	0	0	0	0	0
-Pisd-ps2	0	0	0	1	0	0	0	0
-Pisd-ps3	4	1	1	2	0	5	2	0
-Pitpnm1	1	0	0	0	0	0	0	0
-Pknox1	6	0	0	0	2	7	1	0
-Pla2g2a	0	0	0	0	0	0	0	0
-Plcxd1	1	0	0	1	0	0	0	0
-Pldi	0	0	0	0	0	0	0	0
-Plk4	0	0	0	0	0	1	0	0
-Plscr3	1	0	1	1	1	0	0	0
-Pnpla2	10	4	1	1	1	8	5	2
-Polg2	0	0	0	0	2	2	0	0
-Ppargc1a	3	1	2	3	0	8	1	0
-Ppifos	3	0	0	2	0	6	0	4
-Ppp1r12b	0	0	2	0	0	1	0	0
-Ppp1r2-ps3	0	0	0	0	0	0	0	0
-Ppp1r2-ps7	0	0	0	0	0	0	0	0
-Ppp1r2-ps9	0	0	0	0	0	0	0	0
-Ppp2r2b	0	0	1	0	0	0	0	1
-Ppp2r3d	2	0	0	0	0	0	0	0
-Ppp4r1l-ps	2	0	0	1	0	5	0	0
-Pradc1	0	0	1	0	2	4	0	0
-Pram1	0	0	0	0	0	1	0	0
-Prl8a6	0	0	0	0	0	0	0	0
-Prmt1	5	1	0	2	0	2	0	0
-Prmt6	2	0	0	0	1	0	0	0
-Proc	28	0	0	0	2	50	3	0
-Prr18	0	0	0	0	0	0	0	0
-Prr3	0	0	0	0	0	0	0	0
-Psg-ps1	0	0	0	0	0	0	0	0
-Psmd2	19	2	0	3	0	29	3	2
-Pum2	16	1	4	2	0	26	2	1
-Pvt1	2	1	0	0	1	2	1	1
-R74862	5	0	0	1	2	3	2	2
-Rabggtb	5253	774	579	1602	3493	3501	3690	643
-Rad51d	28	8	4	12	8	28	4	0
-Ralgps2	15	1	2	0	1	10	1	0
-Ranbp3	10	0	2	0	2	5	1	1
-Rasgrp4	0	0	1	0	0	0	0	0
-Raver1-fdx1l	12	0	0	2	0	15	2	1
-Rbbp8	4	2	0	0	2	8	0	2
-Rbm18	1	2	4	0	0	3	2	0
-Rbm7	2	2	0	3	0	5	2	0
-Rbmx	48	17	9	75	33	33	12	13
-Rcbtb2	9	0	2	1	1	10	3	3
-Rchy1	4	0	1	0	1	4	1	0
-Rdh18-ps	0	0	0	0	0	2	0	0
-Rgag4	0	0	0	0	0	0	0	0
-Rhno1	0	0	2	0	0	2	0	0
-Rian	17	12	5	29	6	7	2	10
-Rit1	4	1	1	0	0	2	0	0
-Rmi1	1	1	0	1	0	4	1	0
-Rmrp	601	278	192	679	452	220	484	272
-Rmst	1	1	5	0	0	1	0	2
-Rn4.5s	0	0	0	0	0	0	0	0
-Rn45s	126292	30052	33600	12266	20627	87267	20102	30198
-Rnf126	2	1	0	0	1	1	0	0
-Rnf44	32	2	2	2	0	46	4	0
-Rnu11	104	8	12	30	11	116	8	8
-Rnu12	93	8	8	11	5	66	13	8
-Rnu6	0	0	0	0	0	0	0	0
-Rnu7	0	0	0	0	0	0	0	0
-Rnu73b	18	2	3	3	2	8	5	3
-Rpl22	14	2	0	4	0	14	4	2
-Rplp2-ps1	0	0	0	0	0	1	0	1
-Rpph1	125	10	15	40	48	103	74	15
-Rprl1	0	0	0	0	0	0	0	0
-Rprl2	0	0	0	0	0	0	0	0
-Rprl3	5	1	1	0	0	0	1	0
-Rps15a-ps4	0	0	0	0	0	0	0	0
-Rps15a-ps6	0	0	0	0	0	0	0	0
-Rps19-ps3	0	0	0	0	0	0	0	0
-Rps27	1	0	0	0	0	0	2	0
-Rps4y2	0	0	0	0	1	1	0	0
-Rreb1	46	3	4	9	3	42	4	2
-Rtel1	1	0	1	0	0	2	0	0
-Rubie	0	0	0	0	0	0	0	0
-Runx2	0	3	2	5	3	0	1	4
-Samd7	0	0	0	1	0	0	0	0
-Sapcd1	0	1	0	0	0	0	0	0
-Scarna10	7	0	2	5	3	4	1	1
-Scarna13	4	1	0	0	0	2	3	0
-Scarna17	2377	331	306	398	1752	1971	1752	337
-Scarna2	9	2	0	8	0	6	5	2
-Scarna3a	272	148	109	300	196	337	243	137
-Scarna3b	525	146	134	452	386	589	431	121
-Scarna6	589	90	88	224	500	317	495	95
-Scarna8	0	0	1	2	2	1	3	0
-Scarna9	21	10	5	3	7	8	8	5
-Scgb2b23-ps	0	0	0	0	0	0	0	0
-Schip1	0	6	6	1	0	1	0	3
-Scnn1b	0	20	5	11	0	0	0	9
-Sec14l1	0	1	0	2	0	0	0	1
-Sec16b	22	0	0	1	0	31	3	0
-Sec23b	1	1	0	0	0	5	0	0
-Sema6c	0	0	0	0	3	0	0	0
-Senp2	3	0	0	0	0	5	0	0
-Serp2	0	0	2	0	0	0	0	1
-Serpina3h	0	0	0	0	0	0	0	0
-Serpina4-ps1	145	0	0	0	19	117	14	0
-Sfpq	11	3	3	2	0	20	2	1
-Sgsm1	0	0	0	0	2	2	0	0
-Sh2d3c	2	2	3	1	0	2	1	2
-Six3os1	0	0	0	0	0	0	0	8
-Slc12a4	3	0	2	1	1	1	0	0
-Slc22a13b-ps	0	0	0	0	0	1	0	0
-Slc25a43	0	4	0	0	0	0	0	0
-Slc25a44	22	2	1	3	3	33	11	2
-Slc2a4rg-ps	0	0	0	0	0	0	2	0
-Slc35c2	2	0	0	0	0	3	0	0
-Slfn10-ps	0	0	0	0	0	0	0	0
-Slx1b	0	0	0	0	0	3	0	0
-Smarca5-ps	0	0	0	0	0	0	0	0
-Smim4	1	0	1	0	0	0	0	1
-Smok4a	0	0	0	0	0	0	0	0
-Smpx	0	0	0	2	0	0	0	2
-Snapc4	1	0	0	1	0	7	0	0
-Snhg1	8185	2277	1889	5095	5790	6478	5840	2283
-Snhg10	4	1	0	0	0	2	3	0
-Snhg12	1273	233	180	1043	811	922	743	198
-Snhg3	28	9	2	10	6	18	18	3
-Snhg4	7	4	6	11	3	3	3	10
-Snhg5	1	3	1	2	2	0	2	2
-Snhg6	390	145	138	191	236	256	215	191
-Snhg7	34	4	3	15	15	82	13	7
-Snhg8	42	7	5	14	36	19	33	8
-Snhg9	5	2	0	5	0	4	2	4
-Snora15	0	0	0	0	0	0	0	0
-Snora16a	121	12	16	75	44	113	70	13
-Snora17	32	3	3	12	9	82	8	6
-Snora19	0	0	0	0	0	0	0	0
-Snora20	4	1	0	3	1	7	2	0
-Snora21	3	2	0	3	4	4	3	1
-Snora23	8	0	0	1	0	5	0	0
-Snora24	42	7	5	14	33	19	32	8
-Snora26	6	0	1	0	2	1	2	1
-Snora28	25	3	5	5	7	13	8	5
-Snora2b	1	0	0	1	0	0	0	0
-Snora3	14	0	2	5	20	13	9	6
-Snora30	0	0	0	0	0	0	0	1
-Snora31	57	38	38	36	10	81	25	35
-Snora33	2	0	0	0	0	0	0	0
-Snora34	3	2	3	2	5	7	1	3
-Snora35	0	0	0	0	0	0	0	0
-Snora36b	76	79	63	156	53	38	70	98
-Snora41	90	32	20	85	38	25	85	19
-Snora43	1	1	0	3	2	0	0	0
-Snora44	159	76	73	81	82	107	88	58
-Snora47	4	1	1	2	1	2	1	1
-Snora52	24	4	4	13	16	23	13	8
-Snora5c	0	0	0	0	0	0	0	0
-Snora61	50	10	5	23	21	24	20	11
-Snora62	5	0	0	2	0	4	6	0
-Snora64	18	0	0	5	7	15	1	1
-Snora65	24	3	6	2	11	17	14	6
-Snora68	37	10	5	48	23	38	38	14
-Snora69	6	1	0	7	4	10	3	2
-Snora70	1	0	0	0	0	1	2	0
-Snora74a	7	2	5	11	0	2	2	7
-Snora75	4	0	0	3	0	2	0	1
-Snora78	5	2	0	5	0	4	2	4
-Snora7a	30	1	4	7	2	26	9	1
-Snora81	11	0	1	5	0	3	0	2
-Snord100	197	69	56	160	134	160	155	75
-Snord104	9351	886	720	2493	5610	7452	6017	929
-Snord11	150	8	14	47	59	53	54	14
-Snord110	443	266	226	297	338	266	373	262
-Snord111	23	6	4	13	14	10	6	6
-Snord116	0	0	0	0	0	0	0	0
-Snord116l1	0	0	0	0	0	0	0	0
-Snord116l2	0	0	0	0	0	0	0	0
-Snord118	0	0	0	0	0	0	0	0
-Snord12	534	115	104	602	380	354	356	121
-Snord123	10	16	11	42	2	6	6	9
-Snord14a	0	0	0	0	0	0	0	0
-Snord14c	0	0	0	0	0	0	0	0
-Snord14d	0	0	0	0	0	0	0	0
-Snord15a	20	4	3	5	10	9	4	2
-Snord15b	63	26	16	24	24	25	34	7
-Snord16a	136	5	5	29	24	130	30	9
-Snord17	326	116	78	148	228	85	269	110
-Snord19	366	148	118	333	314	465	338	121
-Snord1a	62	7	9	27	54	32	31	8
-Snord1b	14	3	4	4	2	5	3	2
-Snord1c	0	0	0	0	0	0	0	0
-Snord2	914	320	248	479	582	504	625	282
-Snord22	15	9	2	19	6	6	5	7
-Snord23	28	2	0	7	4	36	6	0
-Snord32a	505	164	116	501	394	378	418	170
-Snord33	649	189	195	310	598	709	602	190
-Snord34	34	4	3	13	21	15	19	1
-Snord35a	25	8	6	7	23	39	18	5
-Snord35b	5	3	1	0	1	2	3	0
-Snord37	134	39	32	89	113	74	80	44
-Snord38a	54	9	11	37	42	34	53	15
-Snord42a	61	93	100	30	31	20	35	68
-Snord42b	227	70	66	88	229	137	195	83
-Snord43	666	121	120	542	444	504	438	140
-Snord45b	620	98	72	138	458	244	499	70
-Snord45c	323	57	49	190	212	322	212	62
-Snord47	120	5	8	29	31	49	25	10
-Snord49a	232	84	51	256	151	120	145	75
-Snord49b	393	62	57	216	245	123	294	95
-Snord4a	324	50	39	155	196	165	191	31
-Snord52	4584	654	591	753	3716	3171	3941	649
-Snord53	65	21	11	57	50	23	51	12
-Snord55	462	124	101	450	309	255	250	119
-Snord57	1737	785	744	2031	1351	1445	1388	787
-Snord58b	46	85	81	3	44	29	49	57
-Snord61	46	16	8	75	31	32	12	13
-Snord64	24	22	19	48	13	19	35	17
-Snord65	29	74	90	8	17	19	15	68
-Snord66	884	267	281	340	693	807	696	244
-Snord67	39	4	1	17	18	13	11	5
-Snord68	1644	460	353	1060	1295	805	1310	376
-Snord69	440	157	105	401	341	407	333	117
-Snord7	6	1	0	1	0	0	0	2
-Snord70	23	6	11	16	10	6	14	6
-Snord71	93	20	20	38	51	26	64	29
-Snord72	159	21	24	57	102	123	101	16
-Snord73a	29	3	3	7	6	9	2	5
-Snord8	10	1	3	4	4	6	2	2
-Snord82	47	17	14	19	19	40	18	17
-Snord83b	48	22	12	35	22	34	32	16
-Snord85	3804	911	737	1422	3047	1133	3156	882
-Snord87	390	145	138	190	235	255	215	191
-Snord88a	96	69	73	77	62	101	59	52
-Snord88c	74	29	22	35	41	65	52	23
-Snord89	13	2	2	3	2	8	3	3
-Snord90	43	2	3	46	14	48	10	5
-Snord91a	363	40	29	81	256	358	285	25
-Snord92	23	9	5	17	8	29	7	8
-Snord93	45	54	50	161	29	34	29	33
-Snord95	708	217	195	326	483	675	444	210
-Snord96a	145	16	22	56	71	106	59	12
-Snord98	74	44	24	150	77	96	56	32
-Snord99	931	126	80	847	655	668	555	108
-Sox2ot	0	1	0	1	0	0	0	0
-Speer1-ps1	0	0	0	0	0	0	0	0
-Speer5-ps1	0	0	0	0	0	0	0	0
-Speer6-ps1	0	0	0	0	0	0	0	0
-Speer7-ps1	0	0	0	0	0	0	0	0
-Speer8-ps1	0	0	0	0	0	0	0	0
-Speer9-ps1	1	0	0	0	0	0	0	0
-Spn-ps	0	0	0	0	0	0	0	0
-Spns1	5	0	0	1	1	1	0	1
-Sprr2g	0	0	0	0	0	0	0	0
-Sprr2j-ps	0	0	0	0	0	0	0	0
-Sqrdl	35	1	0	1	4	58	3	0
-Sra1	7	0	0	0	2	4	6	0
-Srsf3	7	2	8	2	11	9	14	4
-Srsf7	1	1	0	0	0	5	0	1
-Srsf9	1	2	0	1	0	7	0	3
-St18	0	0	0	0	0	0	0	0
-St5	7	3	0	1	2	7	2	2
-St7l	8	1	1	1	3	12	4	2
-Stap2	10	0	2	2	1	6	4	0
-Stmn1-rs1	0	0	0	0	0	0	0	0
-Stoml1	0	0	0	0	0	0	0	0
-Stxbp3b	0	0	0	0	0	0	0	0
-Surf1	3	0	0	2	3	7	5	0
-Suv39h2	0	0	0	0	0	0	0	0
-Svip	1	0	2	0	0	1	0	0
-Syce2	6	0	0	0	0	19	1	0
-Sycp1-ps1	0	0	0	0	0	0	0	0
-Szrd1	40	4	0	2	16	40	4	2
-Taf1b	1	1	1	0	0	0	0	0
-Taf1d	357	53	56	156	174	341	230	54
-Tardbp	18	0	1	3	7	20	3	0
-Tbrg3	1	1	0	0	0	0	0	0
-Tcp10a	0	0	0	0	0	0	0	0
-Terc	22	1	0	0	18	10	15	0
-Thap6	2	0	2	2	1	1	0	0
-Tk2	1	2	0	2	1	1	3	0
-Tmem161b	0	0	0	0	2	2	4	0
-Tmem179b	8	0	0	0	0	8	0	0
-Tmem181b-ps	0	0	0	0	0	0	0	0
-Tmem181c-ps	0	0	0	0	0	0	0	0
-Tmem194b	0	0	1	0	1	0	0	0
-Tmem205	35	2	0	1	4	57	6	1
-Tmem41a	7	0	0	0	0	5	2	0
-Tmem51as1	1	0	0	0	0	2	0	0
-Tmem80	0	0	0	1	1	0	0	0
-Tor2a	2	0	0	0	0	11	3	0
-Tpsab1	0	0	0	0	0	0	0	0
-Trappc13	1	0	0	1	0	0	3	1
-Trim30e-ps1	0	0	0	0	0	0	0	0
-Trim52	0	0	0	0	0	0	0	0
-Trmt61b	11	0	0	0	2	5	0	0
-Trpc4	1	4	1	1	0	0	1	0
-Trpt1	2	0	0	0	0	2	0	0
-Trub2	0	0	0	0	0	0	0	0
-Tsix	0	0	0	0	0	4	0	0
-Tslp	0	0	0	1	0	0	0	0
-Tspy-ps	0	0	0	0	0	0	0	0
-Tsr2	0	0	1	0	0	2	0	0
-Tubb2a-ps2	0	0	0	0	0	0	0	0
-Tubgcp4	2	2	0	1	0	7	1	0
-Tug1	18	3	0	16	2	27	6	6
-Tyms	0	0	0	0	0	0	1	1
-Tyms-ps	0	0	0	0	0	0	0	0
-Tysnd1	2	0	0	0	1	7	3	0
-Tyw5	1	1	0	0	0	0	0	1
-U05342	20	0	1	3	3	24	3	0
-U90926	0	0	0	0	0	0	0	0
-Ube2w	3	1	2	1	1	3	1	0
-Ubl4	3	1	0	1	0	5	3	2
-Ubxn11	0	0	0	0	0	0	0	0
-Uchl1as	0	0	0	0	0	0	0	1
-Ufd1l	0	0	1	0	0	6	0	0
-Uqcc	5	0	2	1	0	8	1	1
-Vash2	0	0	0	0	0	0	0	0
-Vaultrc5	243	258	161	383	159	262	286	270
-Vax2os	0	0	0	0	0	0	0	0
-Vmn1r-ps79	0	0	0	0	0	0	0	0
-Vmn2r-ps11	0	0	0	1	0	0	0	0
-Vmn2r-ps129	0	0	0	0	0	0	0	0
-Vmn2r-ps159	0	0	0	0	0	0	0	0
-Vmn2r-ps54	0	0	1	0	0	0	0	0
-Vmn2r-ps60	0	0	0	0	0	0	0	0
-Vmn2r29	2	0	0	0	0	0	0	0
-Vps39	3	1	0	0	0	8	0	0
-Vsig8	194	50	35	100	99	74	109	50
-Wac	15	0	0	0	2	15	2	2
-Wbscr25	0	2	1	0	0	1	0	0
-Wdr13	2	2	1	3	0	1	0	3
-Wdr73	4	0	0	0	0	2	1	0
-Wiz	10	0	1	6	1	3	3	2
-Wls	1	1	0	3	2	0	0	1
-Wwp1	40	0	2	2	4	56	10	4
-Xist	0	0	0	0	0	8	0	0
-Yaf2	2	0	0	0	0	6	0	2
-Yars2	1	0	0	0	1	1	0	0
-Yipf2	1	0	0	1	0	10	0	0
-Ythdf3	16	4	1	4	3	19	3	2
-Zbtb24	1	0	0	1	0	0	0	0
-Zc3h14	11	1	0	0	1	2	2	2
-Zc3h7a	336	148	60	20	17	99	14	60
-Zf12	0	0	0	0	0	0	0	0
-Zfa-ps	0	0	0	0	0	0	0	0
-Zfhx2as	0	0	0	0	0	1	0	0
-Zfp133-ps	0	0	0	0	0	0	0	0
-Zfp207	5	0	2	0	0	9	1	2
-Zfp326	7	2	1	1	0	4	4	0
-Zfp389	0	0	0	0	0	0	0	0
-Zfp410	10	0	2	0	0	6	2	0
-Zfp414	1	0	0	0	0	4	0	0
-Zfp57	0	0	0	0	0	0	0	0
-Zfp572	0	0	0	0	0	0	0	0
-Zfp672	0	0	0	0	0	2	0	0
-Zfp783	0	0	0	0	0	0	0	0
-Zfp809	7	1	0	0	0	4	2	0
-Zfp821	0	0	0	2	2	0	0	0
-Zfp862	4	0	0	0	0	10	2	0
-Zim3	0	0	0	0	0	0	0	0
-Zmynd8	3	5	4	4	3	8	2	1
-Znf41-ps	0	0	0	0	0	0	0	0
-Zp4-ps	0	0	0	0	0	0	0	0
-Zscan4a	0	0	0	0	0	0	0	0
-Zxda	0	0	0	0	0	0	0	0

--- a/tool_dependencies.xml	Mon Mar 03 00:16:45 2014 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,40 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="ghostscript" version="9.07">
-        <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="graphicsmagick" version="1.3.18">
-        <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="r303" version="3.0.3">
-        <repository changeset_revision="4c934f6b342e" name="package_r303" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="biocbasics" version="2.14">
-        <install version="1.0"> 
-            <actions>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="4c934f6b342e" name="package_r303" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="r303" version="3.0.3" />
-                    </repository>
-                </action>
-                <action type="make_directory">$INSTALL_DIR</action>
-                <action type="shell_command">echo "bioclite=\"http://bioconductor.org/biocLite.R\"" &gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "source(bioclite)" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "installme=c(\"edgeR\",\"limma\",\"DESeq\",\"DESeq2\")" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "biocLite()" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "biocLite(installme)" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "install.packages(c(\"stringr\",\"gplots\"),dependencies=T,repos=\"http://cran.us.r-project.org\")" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "quit(save=\"no\")" &gt;&gt; $INSTALL_DIR/runme.R</action>                
-                <action type="shell_command">echo "PATH=$PATH 1&gt;&amp;2"</action>                
-                <action type="shell_command">echo "R_PATH=$R_PATH 1&gt;&amp;2"</action>                
-                <action type="shell_command">export PATH=$PATH &amp;&amp; $R_PATH/R CMD BATCH $INSTALL_DIR/runme.R </action>
-            </actions>
-        </install>
-        <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs
-        It's clunky but this is the most convenient way I could get anything installed into the package_r3
-        Note we use cran at fred hutch since no fastest mirror thingy
-        If atlas will not compile - eg: it thinks autoscaling is on or something,
-        you need (eg for ubuntu) libopenblas-base installed on all nodes after commenting or removing all atlas references
-       </readme>
-    </package>
-</tool_dependency>