Mercurial > repos > fubar > differential_count_models

changeset 97:395197c30bf7 draft

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Uploaded
author fubar
date Sun, 02 Mar 2014 23:07:37 -0500
parents e7d02e6b253c
children 4b0d2cfb458f
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Mar 02 23:01:19 2014 -0500
+++ b/tool_dependencies.xml	Sun Mar 02 23:07:37 2014 -0500
@@ -20,9 +20,12 @@
                         <package name="r303" version="3.0.3" />
                     </repository>
                 </action>
-                <action type="make_directory">$INSTALL_DIR</action>     
-                <action type="shell_command">ls -l</action>
-                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $RUNME_PATH/runme.R </action>
+                <action type="make_directory">$INSTALL_DIR</action>  
+                <action type="move_file">
+                    <source>"&gt;$REPOSITORY_INSTALL_DIR/runme.R</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $INSTALL_DIR/runme.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs