# HG changeset patch
# User fubar
# Date 1392703948 18000
# Node ID a83f8effff05bbfb6bb06414f1a8766499d19550
# Parent f33aac17f15d563203b8013e865d2118c87252de
Uploaded
diff -r f33aac17f15d -r a83f8effff05 tool_dependencies.xml
--- a/tool_dependencies.xml Tue Feb 18 01:12:00 2014 -0500
+++ b/tool_dependencies.xml Tue Feb 18 01:12:28 2014 -0500
@@ -24,8 +24,8 @@
echo "biocLite(installme)" >> $INSTALL_DIR/runme.R
echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" >> $INSTALL_DIR/runme.R
echo "quit(save='no')" >> $INSTALL_DIR/runme.R
- echo "PATH=$PATH"
- export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R
+ echo "PATH=$PATH"
+ export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R
Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs